Academisch Medisch Centrum Universiteit van Amsterdam

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2010

• Gwadry-Sridhar F, Olabarriaga SD, van Kampen A, Bauer M, Solomonides T. Hitting the ground running: Healthgrid deployment and adoption. STUD HEALTH TECHNOL INFORM 2010;159:40-51.   [ PubMed ]
• Klarenbeek PL, Tak PP, van Schaik BDC, Zwinderman AH, Jakobs ME, Zhang Z, van Kampen AHC, van Lier RAW, Baas F, de Vries N. Human T Cell Memory Consists Mainly Of Unexpanded Clones. IMMUNOL LETT 2010; [aheadofprint]   [ PubMed ]

2009

• van Hooff SR, Koster J, Hulsen T, van Schaik BDC, Roos M, van Batenburg MF, Versteeg R, van Kampen AHC. The Construction of Genome-Based Transcriptional Units. OMICS 2009;13(2):105-114.   [ PubMed ]

2008

• Biewenga P, Buist MR, Moerland PD, van Thernaat EVL, van Kampen AHC, ten Kate FJW, Baas F. Gene expression in early stage cervical cancer. GYNECOL ONCOL 2008;108(3):520-526.   [ PubMed ]
• Buimer M, Keijser R, Jebbink JM, Wehkamp D, van Kampen AHC, Boer K, van der Post JAM, Ris-Stalpers C. Seven placental transcripts characterize HELLP-syndrome. PLACENTA 2008;29(5):444-453.   [ PubMed ]
• Inda MA, van Batenburg MF, Roos M, Belloum AS, Vasunin D, Wibisono A, van Kampen AHC, Breit TM. SigWin-detector: a Grid-enabled workflow for discovering enriched windows of genomic features related to DNA sequences. BMC RES NOTES 2008;1(1):63.   [ PubMed ]
• Lagarde SM, Ver Loren van Themaat PE, Moerland PD, Gilhuijs-Pederson LA, ten Kate FJW, Reitsma PH, van Kampen AHC, Zwinderman AH, Baas F, van Lanschot JJB. Analysis of Gene Expression Identifies Differentially Expressed Genes and Pathways Associated with Lymphatic Dissemination in Patients with Adenocarcinoma of the Esophagus. ANN SURG ONCOL 2008;15(12):3459-3470.   [ PubMed ]
• Martens K, van Themaat EVL, van Batenburg MF, Heinaeniemi M, Huyghe S, van Hummelen P, Carlberg C, van Veldhoven PP, van Kampen A, Baes M. Coordinate induction of PPAR alpha and SREBP2 in multifunctional protein 2 deficient mice. BBA-MOL CELL BIOL L 2008;1781(11-12):694-702.
• Schaaf GJ, van Ruissen F, van Kampen A, Kool M, Ruijter JM. Statistical comparison of two or more SAGE libraries: one tag at a time. METHODS MOL BIOL 2008;387:151-168.   [ PubMed ]
• Schaaf GJ, van Ruissen F, van Kampen A, Kool M, Ruijter JM. Statistical comparison of two or more SAGE libraries: one tag at the time.. In: Nielsen KL, editor. Serial analysis of gene expression (SAGE). Methods and protocols.. Totowa NJ: Humana Press; 2008. p. 151-168.
• Sokolovic M, Sokolovic A, Wehkamp D, Ver Loren van Themaat E, de Waart DR, Gilhuijs-Pederson LA, Nikolsky Y, van Kampen AHC, Hakvoort TBM, Lamers WH. The transcriptomic signature of fasting murine liver. BMC GENOMICS 2008;9(1):528.   [ PubMed ]
• Willemsen AM, Jansen GA, Komen JC, van Hooff S, Waterham HR, Brites PMT, Wanders RJA, van Kampen AHC. Organization and integration of biomedical knowledge with concept maps for key peroxisomal pathways. BIOINFORMATICS 2008;24(16):I21-I27.   [ PubMed ]

2007

• Nyangoma SO, van Kampen AAHC, Reijmers TH, Govorukhina NI, van der Zee AGJ, Billingham LJ, Bischoff R, Jansen RC. Multiple testing issues in discriminating compound-related peaks and chromatograms from high frequency noise, spikes and solvent-based noise in LC-MS data sets. STAT APPL GENET MOL 2007;6:23.
• Sokolović M, Wehkamp D, Sokolović A, Vermeulen J, Gilhuijs-Pederson LA, van Haaften RIM, Nikolsky Y, Evelo CTA, van Kampen AHC, Hakvoort TBM, Lamers WH. Fasting induces a biphasic adaptive metabolic response in murine small intestine. BMC GENOMICS 2007;8(1):361.   [ PubMed ]

2006

• van Passel MWJ, Bart A, Luyf ACM, van Kampen AHC, van der Ende A. Compositional discordance between prokaryotic plasmids and host chromosomes. BMC GENOMICS 2006;7:26.   [ PubMed ]
• van Passel MWJ, Bart A, Luyf ACM, van Kampen AHC, van der Ende A. Identification of acquired DNA in Neisseria lactamica. FEMS MICROBIOL LETT 2006;262(1):77-84.   [ PubMed ]
• Vos JB, Datson NA, van Kampen AH, Luyf AC, Verhoosel RM, Zeeuwen PL, Olthuis D, Rabe KF, Schalkwijk J, Hiemstra PS. A molecular signature of epithelial host defense: comparative gene expression analysis of cultured bronchial epithelial cells and keratinocytes. BMC GENOMICS 2006;7:9.   [ PubMed ]
• Zelinkova Z, Derijks LJJ, Stokkers PCF, Vogels EWM, van Kampen AHC, Curvers WL, Cohn D, van Deventer SJH, Hommes DW. Inosine triphosphate pyrophosphatase and thiopurine s-methyltransferase genotypes relationship to azathioprine-induced myelosuppression. CLIN GASTROENTEROL H 2006;4(1):44-49.   [ PubMed ]

2005

• Braat H, Stokkers P, Hommes T, Cohn D, Vogels E, Pronk I, Spek A, van Kampen A, van Deventer S, Peppelenbosch M, Hommes D. Consequence of functional Nod2 and Tlr4 mutations on gene transcription in Crohn's disease patients. J MOL MED-JMM 2005;83(8):601-609.   [ PubMed ]
• Schaaf GJ, Ruijter JM, van Ruissen F, Zwijnenburg DA, Waaijer R, Valentijn LJ, Benit-Deekman J, van Kampen AHC, Baas F, Kool M. Full transcriptome analysis of rhabdomyosarcoma, normal, and fetal skeletal muscle: statistical comparison of multiple SAGE libraries. FASEB J 2005;19(3):404-406.   [ PubMed ]
• van Kampen AHC, Horrevoets AJG. The role of bioinformatics in genomic medicine. In: Pasterkamp G, de Kleijn DPV, editors. Cardiovascular research. New technologies, methods, and applications. Newe York: Springer Science+Business Media Inc; 2005. p. 103-121.
• van Passel MWJ, Bart A, Thygesen HH, Luyf ACM, van Kampen AHC, van der Ende A. An acquisition account of genomic islands based on genome signature comparisons. BMC GENOMICS 2005;6:163.   [ PubMed ]
• van Passel MWJ, Luyf ACM, van Kampen AHC, Bart A, van der Ende A. Deltarho-web, an online tool to assess composition similarity of individual nucleic acid sequences. BIOINFORMATICS 2005;21(13):3053-3055.   [ PubMed ]

2004

• van Passel MWJ, Bart A, Waaijer RJA, Luyf ACM, van Kampen AHC, van der Ende A. An in vitro strategy for the selective isolation of anomalous DNA from prokaryotic genomes. NUCLEIC ACIDS RES 2004;32(14):e114.   [ PubMed ]

2003

• de Jonge RR, Vreijling JP, Meintjes A, Kwa MSG, van Kampen AHC, van Schaik IN, Baas F. Transcriptional profile of the human peripheral nervous system by serial analysis of gene expression. GENOMICS 2003;82(2):97-108.   [ PubMed ]
• van Kampen AHC, Ruijter JM, van Schaik BDC, Caron HN, Versteeg R. Gene expression informatics and analysis. In: Barnes MR, Gray IC, editors. Bioinformatics for geneticists. Chichester: John Wiley & Sons; 2003. p. 319-344.
• Versteeg R, van Schaik BDC, van Batenburg MF, Roos M, Monajemi R, Caron H, Bussemaker HJ, van Kampen AHC. The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes. GENOME RES 2003;13(9):1998-2004.   [ PubMed ]

2002

• Luyf ACM, de Gast J, van Kampen AHC. Visualizing metabolic activity on a genome-wide scale. BIOINFORMATICS 2002;18(6):813-818.   [ PubMed ]
• Ruijter JM, van Kampen AHC, Baas F. Statistical evaluation of SAGE libraries: consequences for experimental design. PHYSIOL GENOMICS 2002;11(2):37-44.   [ PubMed ]

2001

• Caron H, van Schaik B, van der Mee M, Baas F, Riggins G, van Sluis P, Hermus MC, van Asperen R, Boon K, Voûte PA, Heisterkamp S, van Kampen A, Versteeg R. The human transcriptome map: clustering of highly expressed genes in chromosomal domains. SCIENCE 2001;291(5507):1289-1292.   [ PubMed ]
• Moreno JC, Pauws E, van Kampen AH, Jedlicková M, de Vijlder JJ, Ris-Stalpers C. Cloning of tissue-specific genes using serial analysis of gene expression and a novel computational substraction approach. GENOMICS 2001;75(1-3):70-76.   [ PubMed ]
• Pauws E, van Kampen AH, van de Graaf SA, de Vijlder JJ, Ris-Stalpers C. Heterogeneity in polyadenylation cleavage sites in mammalian mRNA sequences: implications for SAGE analysis. NUCLEIC ACIDS RES 2001;29(8):1690-1694.   [ PubMed ]
• Spieker N, van Sluis P, Beitsma M, Boon K, van Schaik BD, van Kampen AH, Caron H, Versteeg R. The MEIS1 oncogene is highly expressed in neuroblastoma and amplified in cell line IMR32. GENOMICS 2001;71(2):214-221.   [ PubMed ]

2000

• van Kampen AH, van Schaik BD, Pauws E, Michiels EM, Ruijter JM, Caron HN, Versteeg R, Heisterkamp SH, Leunissen JA, Baas F, van der Mee M. USAGE: a web-based approach towards the analysis of SAGE data. Serial Analysis of Gene Expression. BIOINFORMATICS 2000;16(10):899-905.   [ PubMed ]

1997

• van Kampen AH, Buydens LM. Reinvestigation of a genetic-based classifier system: the effectiveness of recombination. COMPUT CHEM 1997;21(3):153-160.   [ PubMed ]
• van Kampen AHC, Beckers MLM, Buydens LMC. A comparative study of the DG-OMEGA (DG Omega), DGII, and GAT method for the structure elucidation of a methylene-acetal linked thymine dinucleotide. COMPUT CHEM 1997;21(5):281-297.

1996

• van Kampen AH, Buydens LM, Lucasius CB, Blommers MJ. Optimisation of metric matrix embedding by genetic algorithms. J BIOMOL NMR 1996;7(3):214-224.   [ PubMed ]