Researchers

  • Principal Investigator
  • Male

Prof. dr. B. Berkhout

Position: Professor
Main activities: Research
Specialisation: Virology
foto B. Berkhout is one of the AMC Principal Investigators
Focus of research:
  • Mechanism of HIV-1 gene expression and latency
  • Structure and function of the HIV-1 RNA genome
  • Virus evolution and drug-resistance
  • Novel vaccine strategies
  • RNA interference as antiviral therapy
  • Patient-related virus studies
AMC themes: Infection & Immunity
Departments: Medical Microbiology
Amadori C, Ubeles van der Velden Y, Bonnard D, Orlov I, van Bel N, Le Rouzic E, Miralles L, Brias J, Chevreuil F, Spehner D, Chasset S, Ledoussal B, Mayr L, Moreau F, García F, Gatell J, Zamborlini A, Emiliani S, Ruff M, Klaholz BP, Moog C, Berkhout B, Plana M, Benarous R, The HIV-1 integrase-LEDGF allosteric inhibitor MUT-A: resistance profile, impairment of virus maturation and infectivity but without influence on RNA packaging or virus immunoreactivity. RETROVIROLOGY 2017;14 (1):50 [PubMed]
Bartelsman M, Joore IK, van Bergen JE, Hogewoning AA, Zuure FR, van Veen MG [Contributors: van Bergen JEAM, Deug F, Heidenrijk M, Prins JM, Prins M, Smit PJ, van der Valk M, Reiss P, de Bree GJ, Hoornenborg E, Davidovich U, Geerlings SE, Oomen A, van sighem A, Zuilhof W, Achterbergh RCA, van Agtmael M, Ananworanich J, van de Beek D, van den Berk GEL, Berkhout B, Berretty B, Bezemer D, Blok WL, Bomers M, Boucher CAB, Brokking W, Burger D, Brinkman K, de Bruin M, Op de Coul ELM, O'Dell B, Dellemann L, Ester C, van Duijnhoven YT, Dijkstra M, van Eeden A, van Elsen S, Elsenburg L, Frissen PHJ, Geijtenbeek TBH, Godfried MH, Goorhuis A, Groot M, Gruters RA, Hankins CA, Heijne A, van der Helm JJ, Hillebregt M, Hogewoning A, Hovius JW, Joore IK, Kootstra NA, Koup RA, Kroon FP, Lauw F, Lettinga K, Mahmoudi T, van der Meer JT, van Meeteren S, Mulder J, Nellen FJ, Nobel H, Pasternak AO, Peters E, van der Poll T, Schim van der Loeff MF , Schoute WEM, Rokx C, van Rooijen MS, Sonder GJ, van Veen MG, Veenstra J, Verbon A, Verdult F, Verhagen D, Visser G, de Vries HJ, de Vocht J, Vrouenraets S, van Vugt M, Wiersinga WJ, Wit FW, Woittiez LR, Zaheri S, van Zelm MC, Zuure FR]] , HIV testing week 2015: lowering barriers for HIV testing among high-risk groups in Amsterdam. BMC INFECT DIS 2017;17 (1):529 [PubMed]
Beerenwinkel N, Berkhout B, Domingo E, Foreword. VIRUS RES 2017;239:VII
Benkirane M, Berkhout B, Borrow P, Fassati A, Fujii M, Garcia JV, Gorry P, Lever A, Mak J, Nijhuis M, Strebel K, Venter F, Weiss R, Professor Mark Wainberg. RETROVIROLOGY 2017;14 (1):30 [PubMed]
Berkhout B, A Fourth Generation Lentiviral Vector: Simplifying Genomic Gymnastics. MOL THER 2017;25 (8):1741-1743 [PubMed]
Blanquart F, Wymant C, Cornelissen M, Gall A, Bakker M, Bezemer D, Hall M, Hillebregt M, Ong SH, Albert J, Bannert N, Fellay J, Fransen K, Gourlay AJ, Grabowski MK, Gunsenheimer-Bartmeyer B, Günthard HF, Kivelä P, Kouyos R, Laeyendecker O, Liitsola K, Meyer L, Porter K, Ristola M, van Sighem A, Vanham G, Berkhout B, Kellam P, Reiss P, Fraser C, Correction: Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe. PLOS BIOL 2017;15 (7):e1002608 [PubMed]
Blanquart F, Wymant C, Cornelissen M, Gall A, Bakker M, Bezemer D, Hall M, Hillebregt M, Ong SH, Albert J, Bannert N, Fellay J, Fransen K, Gourlay AJ, Grabowski MK, Gunsenheimer-Bartmeyer B, Günthard HF, Kivelä P, Kouyos R, Laeyendecker O, Liitsola K, Meyer L, Porter K, Ristola M, van Sighem A, Vanham G, Berkhout B, Kellam P, Reiss P, Fraser C, Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe. PLOS BIOL 2017;15 (6):e2001855 [PubMed]
Booiman T, Wit FW, Maurer I, de Francesco D, Sabin CA, Harskamp AM, Prins M, Garagnani P, Pirazzini C, Franceschi C, Fuchs D, Gisslén M, Winston A, Reiss P, Kootstra NA [Contributors: Reiss P, Wit FWNM, Schouten J , Kooij KW, van Zoest RA, Elsenga BC, Janssen FR, Heidenrijk M, Zikkenheiner W, van der Valk M, Kootstra NA, Booiman T, Harskamp-Holwerda AM, Boeser-Nunnink B, Maurer I, Mangas Ruiz MM, Girigorie AF, Villaudy J, Frankin E, Pasternak A, Berkhout B, van der Kuyl T, Portegies P, Schmand BA, Geurtsen GJ , ter Stege JA, Klein Twennaar M, Majoie CBLM, Caan MWA, Su T, Weijer K, Bisschop PHLT, Kalsbeek A, Wezel M, Visser I, Ruhé HG, Franceschi C, Garagnani P, Pirazzini C, Capri M, Dall'Olio F, Chiricolo M, Salvioli S, Hoeijmakers J, Pothof J, Prins M, Martens M, Moll S, Berkel J, Totté M, Kovalev S, Gisslén M, Fuchs D, Zetterberg H, Winston A, Underwood J, McDonald L, Stott M, Legg K, Lovell A, Erlwein O, Doyle N, Kingsley C, Sharp DJ, Leech R, Cole JH, Zaheri S, Hillebregt MMJ, Ruijs YMC, Benschop DP, Burger D, de Graaff-Teulen M, Guaraldi G, Bürkle A, Sindlinger T, Moreno-Villanueva M, Keller A, Sabin C, de Francesco D, Libert C, Dewaele S]] , High Cellular Monocyte Activation in People Living With Human Immunodeficiency Virus on Combination Antiretroviral Therapy and Lifestyle-Matched Controls Is Associated With Greater Inflammation in Cerebrospinal Fluid. OPEN FORUM INFECT DIS 2017;4 (3):ofx108 [PubMed]
Cole JH, Underwood J, Caan MWA, de Francesco D, van Zoest RA, Leech R, Wit FWNM, Portegies P, Geurtsen GJ, Schmand BA, Schim van der Loeff MF, Franceschi C, Sabin CA, Majoie CBLM, Winston A, Reiss P, Sharp DJ [Contributors: Schouten J , Kooij KW, Elsenga BC, Janssen FR, Heidenrijk M, Schrijver JHN, Zikkenheiner W, van der Valk M, Henderiks A, Kootstra NA, Harskamp-Holwerda AM, Maurer I, Ruiz MMM, Booiman T, Girigorie AF, Villaudy J, Frankin E, Pasternak A, Berkhout B, van der Kuyl T, Stege JAt, Twennaar MK, Su T, Siteur-van Rijnstra E, Weijer K, Bisschop PHLT, Kalsbeek A, Wezel M, Visser I, Ruhé HG, Tembo L, Stott M, Legg K, Lovell A, Erlwein O, Doyle N, Norsworthy P, Garagnani P, Pirazzini C, Capri M, Dall'Olio F, Chiricolo M, Salviol S, Hoeijmakers J, Pothof J, Burger D, de Graaff-Teulen M, Bürkle A, Sindlinger T, Moreno-Villanueva M, Keller A, Prins M, Martens M, Moll S, Berkel J, Möller L, Visser GR, Zaheri S, Hillebregt MMJ, Ruijs YMC, Benschop DP, Gisslén M, Fuchs D, Zetterberg H, Libert C, Dewaele S, Guaraldi G]] , Increased brain-predicted aging in treated HIV disease. NEUROLOGY 2017;88 (14):1349-1357 [PubMed]
Cornelissen M, Gall A, Vink M, Zorgdrager F, Binter Š, Edwards S, Jurriaans S, Bakker M, Ong SH, Gras L, van Sighem A, Bezemer D, de Wolf F, Reiss P, Kellam P, Berkhout B, Fraser C, van der Kuyl AC, From clinical sample to complete genome: Comparing methods for the extraction of HIV-1 RNA for high-throughput deep sequencing. VIRUS RES 2017;239:10-16 [PubMed]
de Taeye SW. Stabilization of HIV-1 envelope glycoprotein trimers to induce neutralizing antibodies. S.l.: s.n.; 2017. 288p. ISBN 978-94-6299-541-3 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B, Sanders RW; copromotor(s): )
Gao Z, Harwig A, Berkhout B, Herrera-Carrillo E, Mutation of nucleotides around the +1 position of type 3 Polymerase III promoters: the effect on transcriptional activity and start site usage. TRANSCRIPTION 2017;ahead of print [PubMed]
Harwig A, Kruize Z, Yang Z, Restle T, Berkhout B, Analysis of AgoshRNA maturation and loading into Ago2. PLOS ONE 2017;12 (8):e0183269 [PubMed]
Herrera-Carrillo E, Berkhout B, Dicer-independent processing of small RNA duplexes: mechanistic insights and applications. NUCLEIC ACIDS RES 2017;45 (18):10369-10379 [PubMed]
Herrera-Carrillo E, Berkhout B, Novel AgoshRNA molecules for silencing of the CCR5 co-receptor for HIV-1 infection. PLOS ONE 2017;12 (5):e0177935 [PubMed]
Herrera-Carrillo E, Gao ZL, Harwig A, Heemskerk MT, Berkhout B, The influence of the 5΄-terminal nucleotide on AgoshRNA activity and biogenesis: importance of the polymerase III transcription initiation site. NUCLEIC ACIDS RES 2017;45 (7):4036-4050 [PubMed]
Herrera-Carrillo E, Harwig A, Berkhout B, Influence of the loop size and nucleotide composition on AgoshRNA biogenesis and activity. RNA BIOL 2017;ahead of print [PubMed]
Herrera-Carrillo E, Harwig A, Berkhout B, Silencing of HIV-1 by AgoshRNA molecules. GENE THER 2017;24 (8):453-461 [PubMed]
Herrera-Carrillo E, Liu YP, Berkhout B, Improving miRNA Delivery by Optimizing miRNA Expression Cassettes in Diverse Virus Vectors. HUM GENE THER METHODS 2017;28 (4 1):177-190 [PubMed]
Klaver B, van der Velden Y, van Hemert F, van der Kuyl AC, Berkhout B, HIV-1 tolerates changes in A-count in a small segment of the pol gene. RETROVIROLOGY 2017;14 (1):43 [PubMed]
Steba GS, Koekkoek SM, Vanhommerig JW, Brinkman K, Kwa D, van der Meer JTM, Prins M, Berkhout B, Tanck M, Paxton WA, Molenkamp R, Schinkel J, DC-SIGN Polymorphisms Associated with Risk of Hepatitis C Virus Infection Among Men who Have Sex with Men but not Among Injecting Drug Users. J INFECT DIS 2017;ahead of print [PubMed]
van Montfort T, Speijer D, Berkhout B, Dendritic cells as natural latency reversing agent: a wake-up call for HIV-1. VIRULENCE 2017;ahead of print [PubMed]
Wang G, Zhao N, Berkhout B, Das AT, CRISPR-Cas based antiviral strategies against HIV-1. VIRUS RES 2017;ahead of print [PubMed]
Wang W, Wang Y, Debing Y, Zhou X, Yin Y, Xu L, Herrera Carrillo E , Brandsma JH, Poot RA, Berkhout B, Neyts J, Peppelenbosch MP, Pan Q, Biological or pharmacological activation of protein kinase C alpha constrains hepatitis E virus replication. ANTIVIR RES 2017;140:1-12 [PubMed]
Zhao N, Wang G, Das AT, Berkhout B, Combinatorial CRISPR-Cas9 and RNAi attack on HIV-1 DNA and RNA can lead to cross-resistance. ANTIMICROB AGENTS CH 2017;ahead of print [PubMed]
Berry N, Manoussaka M, Ham C, Ferguson D, Tudor H, Mattiuzzo G, Klaver B, Page M, Stebbings R, Das AT, Berkhout B, Almond N, Cranage MP, Role of Occult and Post-acute Phase Replication in Protective Immunity Induced with a Novel Live Attenuated SIV Vaccine. PLOS PATHOG 2016;12 (12):e1006083 [PubMed]
Chtarto A, Humbert-Claude M, Bockstael O, Das AT, Boutry S, Breger LS, Klaver B, Melas C, Barroso-Chinea P, Gonzalez-Hernandez T, Muller RN, DeWitte O, Levivier M, Lundberg C, Berkhout B, Tenenbaum L, A regulatable AAV vector mediating GDNF biological effects at clinically-approved sub-antimicrobial doxycycline doses. MOL THER-METH CLIN D 2016;5:16027 [PubMed]
Cornelissen M, Zorgdrager F, Bruisten SM, Bakker M, Berkhout B, van der Kuyl AC, Widespread hepatitis B virus genotype G (HBV-G) infection during the early years of the HIV epidemic in the Netherlands among men who have sex with men. BMC INFECT DIS 2016;16 (1):268 [PubMed]
Das AT, Berkhout B, Conditionally replicating HIV and SIV variants. VIRUS RES 2016;216:66-75 [PubMed]
Das AT, Tenenbaum L, Berkhout B, Tet-On Systems For Doxycycline-inducible Gene Expression. CURR GENE THER 2016;16 (3):156-167 [PubMed]
Das AT, Zhou X, Metz SW, Vink MA, Berkhout B, Selecting the optimal Tet-On system for doxycycline-inducible gene expression in transiently transfected and stably transduced mammalian cells. BIOTECHNOL J 2016;11 (1):71-79 [PubMed]
Derking R. Antigenic structure of the HIV-1 envelope glycoprotein trimer. S.l.: s.n.; 2016. 221p. ISBN 978-94-6299-426-3 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): Sanders RW)
Eggink D, de Taeye SW, Bontjer I, Klasse PJ, Langedijk JPM, Berkhout B, Sanders RW, HIV-1 Escape from a Peptidic Anchor Inhibitor through Stabilization of the Envelope Glycoprotein Spike. J VIROL 2016;90 (23):10587-10599 [PubMed]
Harwig A, Jongejan A, van Kampen AHC, Berkhout B, Das AT, Tat-dependent production of an HIV-1 TAR-encoded miRNA-like small RNA. NUCLEIC ACIDS RES 2016;44 (9):4340-4353 [PubMed]
Herrera-Carrillo E, Berkhout B, Attacking HIV-1 RNA versus DNA by sequence-specific approaches: RNAi versus CRISPR-Cas. BIOCHEM SOC T 2016;44 (5):1355-1365 [PubMed]
Klionsky DJ, Abdelmohsen K, Abe A, Abedin MJ, Abeliovich H, Acevedo Arozena A, Adachi H, Adams CM, Adams PD, Adeli K, Adhihetty PJ, Adler SG, Agam G, Agarwal R, Aghi MK, Agnello M, Agostinis P, Aguilar PV, Aguirre-Ghiso J, Airoldi EM, Ait-Si-Ali S, Akematsu T, Akporiaye ET, Al-Rubeai M, Albaiceta GM, Albanese C, Albani D, Albert ML, Aldudo J, Algül H, Alirezaei M, Alloza I, Almasan A, Almonte-Beceril M, Alnemri ES, Alonso C, Altan-Bonnet N, Altieri DC, Alvarez S, Alvarez-Erviti L, Alves S, Amadoro G, Amano A, Amantini C, Ambrosio S, Amelio I, Amer AO, Amessou M, Amon A, An Z, Anania FA, Andersen SU, Andley UP, Andreadi CK, Andrieu-Abadie N, Anel A, Ann DK, Anoopkumar-Dukie S, Antonioli M, Aoki H, Apostolova N, Aquila S, Aquilano K, Araki K, Arama E, Aranda A, Araya J, Arcaro A, Arias E, Arimoto H, Ariosa AR, Armstrong JL, Arnould T, Arsov I, Asanuma K, Askanas V, Asselin E, Atarashi R, Atherton SS, Atkin JD, Attardi LD, Auberger P, Auburger G, Aurelian L, Autelli R, Avagliano L, Avantaggiati ML, Avrahami L, Awale S, Azad N, Bachetti T, Backer JM, Bae DH, Bae JS, Bae ON, Bae SH, Baehrecke EH, Baek SH, Baghdiguian S, Bagniewska-Zadworna A, Bai H, Bai J, Bai XY, Bailly Y, Balaji KN, Balduini W, Ballabio A, Balzan R, Banerjee R, Bánhegyi G, Bao H, Barbeau B, Barrachina MD, Barreiro E, Bartel B, Bartolomé A, Bassham DC, Bassi MT, Bast RC Jr, Basu A, Batista MT, Batoko H, Battino M, Bauckman K, Baumgarner BL, Bayer KU, Beale R, Beaulieu JF, Beck GR Jr, Becker C, Beckham JD, Bédard PA, Bednarski PJ, Begley TJ, Behl C, Behrends C, Behrens GM, Behrns KE, Bejarano E, Belaid A, Belleudi F, Bénard G, Berchem G, Bergamaschi D, Bergami M, Berkhout B, Berliocchi L, Bernard A, Bernard M, Bernassola F, Bertolotti A, Bess AS, Besteiro S, Bettuzzi S, Bhalla S, Bhattacharyya S, Bhutia SK, Biagosch C, Bianchi MW, Biard-Piechaczyk M, Billes V, Bincoletto C, Bingol B, Bird SW, Bitoun M, Bjedov I, Blackstone C, Blanc L, Blanco GA, Blomhoff HK, Boada-Romero E, Böckler S, Boes M, Boesze-Battaglia K, Boise LH, Bolino A, Boman A, Bonaldo P, Bordi M, Bosch J, Botana LM, Botti J, Bou G, Bouché M, Bouchecareilh M, Boucher MJ, Boulton ME, Bouret SG, Boya P, Boyer-Guittaut M, Bozhkov PV, Brady N, Braga VM, Brancolini C, Braus GH, Bravo-San Pedro JM, Brennan LA, Bresnick EH, Brest P, Bridges D, Bringer MA, Brini M, Brito GC, Brodin B, Brookes PS, Brown EJ, Brown K, Broxmeyer HE, Bruhat A, Brum PC, Brumell JH, Brunetti-Pierri N, Bryson-Richardson RJ, Buch S, Buchan AM, Budak H, Bulavin DV, Bultman SJ, Bultynck G, Bumbasirevic V, Burelle Y, Burke RE, Burmeister M, Bütikofer P, Caberlotto L, Cadwell K, Cahova M, Cai D, Cai J, Cai Q, Calatayud S, Camougrand N, Campanella M, Campbell GR, Campbell M, Campello S, Candau R, Caniggia I, Cantoni L, Cao L, Caplan AB, Caraglia M, Cardinali C, Cardoso SM, Carew JS, Carleton LA, Carlin CR, Carloni S, Carlsson SR, Carmona-Gutierrez D, Carneiro LA, Carnevali O, Carra S, Carrier A, Carroll B, Casas C, Casas J, Cassinelli G, Castets P, Castro-Obregon S, Cavallini G, Ceccherini I, Cecconi F, Cederbaum AI, Ceña V, Cenci S, Cerella C, Cervia D, Cetrullo S, Chaachouay H, Chae HJ, Chagin AS, Chai CY, Chakrabarti G, Chamilos G, Chan EY, Chan MT, Chandra D, Chandra P, Chang CP, Chang RCC, Chang TY, Chatham JC, Chatterjee S, Chauhan S, Che Y, Cheetham ME, Cheluvappa R, Chen CJ, Chen G, Chen GC, Chen G, Chen H, Chen JW, Chen JK, Chen M, Chen M, Chen P, Chen Q, Chen Q, Chen SD, Chen S, Chen SSL, Chen W, Chen WJ, Chen WQ, Chen W, Chen X, Chen YH, Chen YG, Chen Y, Chen Y, Chen Y, Chen YJ, Chen YQ, Chen Y, Chen Z, Chen Z, Cheng A, Cheng CH, Cheng H, Cheong H, Cherry S, Chesney J, Cheung CHA, Chevet E, Chi HC, Chi SG, Chiacchiera F, Chiang HL, Chiarelli R, Chiariello M, Chieppa M, Chin LS, Chiong M, Chiu GN, Cho DH, Cho SG, Cho WC, Cho YY, Cho YS, Choi AM, Choi EJ, Choi EK, Choi J, Choi ME, Choi SI, Chou TF, Chouaib S, Choubey D, Choubey V, Chow KC, Chowdhury K, Chu CT, Chuang TH, Chun T, Chung H, Chung T, Chung YL, Chwae YJ, Cianfanelli V, Ciarcia R, Ciechomska IA, Ciriolo MR, Cirone M, Claerhout S, Clague MJ, Clària J, Clarke PG, Clarke R, Clementi E, Cleyrat C, Cnop M, Coccia EM, Cocco T, Codogno P, Coers J, Cohen EE, Colecchia D, Coletto L, Coll NS, Colucci-Guyon E, Comincini S, Condello M, Cook KL, Coombs GH, Cooper CD, Cooper JM, Coppens I, Corasaniti MT, Corazzari M, Corbalan R, Corcelle-Termeau E, Cordero MD, Corral-Ramos C, Corti O, Cossarizza A, Costelli P, Costes S, Cotman SL, Coto-Montes A, Cottet S, Couve E, Covey LR, Cowart LA, Cox JS, Coxon FP, Coyne CB, Cragg MS, Craven RJ, Crepaldi T, Crespo JL, Criollo A, Crippa V, Cruz MT, Cuervo AM, Cuezva JM, Cui T, Cutillas PR, Czaja MJ, Czyzyk-Krzeska MF, Dagda RK, Dahmen U, Dai C, Dai W, Dai Y, Dalby KN, Dalla Valle L, Dalmasso G, D'Amelio M, Damme M, Darfeuille-Michaud A, Dargemont C, Darley-Usmar VM, Dasarathy S, Dasgupta B, Dash S, Dass CR, Davey HM, Davids LM, Dávila D, Davis RJ, Dawson TM, Dawson VL, Daza P, de Belleroche J, de Figueiredo P, de Figueiredo RCBQ, de la Fuente J, de Martino L, de Matteis A, de Meyer GR, de Milito A, de Santi M, de Souza W, de Tata V, de Zio D, Debnath J, Dechant R, Decuypere JP, Deegan S, Dehay B, del Bello B, del Re DP, Delage-Mourroux R, Delbridge LM, Deldicque L, Delorme-Axford E, Deng Y, Dengjel J, Denizot M, Dent P, der CJ, Deretic V, Derrien B, Deutsch E, Devarenne TP, Devenish RJ, Di Bartolomeo S, Di Daniele N, Di Domenico F, Di Nardo A, Di Paola S, Di Pietro A, Di Renzo L, DiAntonio A, Díaz-Araya G, Díaz-Laviada I, Diaz-Meco MT, Diaz-Nido J, Dickey CA, Dickson RC, Diederich M, Digard P, Dikic I, Dinesh-Kumar SP, Ding C, Ding WX, Ding Z, Dini L, Distler JH, Diwan A, Djavaheri-Mergny M, Dmytruk K, Dobson RC, Doetsch V, Dokladny K, Dokudovskaya S, Donadelli M, Dong XC, Dong X, Dong Z, Donohue TM Jr, Doran KS, D'Orazi G, Dorn GW 2nd, Dosenko V, Dridi S, Drucker L, Du J, Du LL, Du L, du Toit A, Dua P, Duan L, Duann P, Dubey VK, Duchen MR, Duchosal MA, Duez H, Dugail I, Dumit VI, Duncan MC, Dunlop EA, Dunn WA Jr, Dupont N, Dupuis L, Durán RV, Durcan TM, Duvezin-Caubet S, Duvvuri U, Eapen V, Ebrahimi-Fakhari D, Echard A, Eckhart L, Edelstein CL, Edinger AL, Eichinger L, Eisenberg T, Eisenberg-Lerner A, Eissa NT, El-Deiry WS, El-Khoury V, Elazar Z, Eldar-Finkelman H, Elliott CJ, Emanuele E, Emmenegger U, Engedal N, Engelbrecht AM, Engelender S, Enserink JM, Erdmann R, Erenpreisa J, Eri R, Eriksen JL, Erman A, Escalante R, Eskelinen EL, Espert L, Esteban-Martínez L, Evans TJ, Fabri M, Fabrias G, Fabrizi C, Facchiano A, Færgeman NJ, Faggioni A, Fairlie WD, Fan C, Fan D, Fan J, Fang S, Fanto M, Fanzani A, Farkas T, Faure M, Favier FB, Fearnhead H, Federici M, Fei E, Felizardo TC, Feng H, Feng Y, Feng Y, Ferguson TA, Fernández ÁF, Fernandez-Barrena MG, Fernandez-Checa JC, Fernández-López A, Fernandez-Zapico ME, Feron O, Ferraro E, Ferreira-Halder CV, Fesus L, Feuer R, Fiesel FC, Filippi-Chiela EC, Filomeni G, Fimia GM, Fingert JH, Finkbeiner S, Finkel T, Fiorito F, Fisher PB, Flajolet M, Flamigni F, Florey O, Florio S, Floto RA, Folini M, Follo C, Fon EA, Fornai F, Fortunato F, Fraldi A, Franco R, Francois A, François A, Frankel LB, Fraser ID, Frey N, Freyssenet DG, Frezza C, Friedman SL, Frigo DE, Fu D, Fuentes JM, Fueyo J, Fujitani Y, Fujiwara Y, Fujiya M, Fukuda M, Fulda S, Fusco C, Gabryel B, Gaestel M, Gailly P, Gajewska M, Galadari S, Galili G, Galindo I, Galindo MF, Galliciotti G, Galluzzi L, Galluzzi L, Galy V, Gammoh N, Gandy S, Ganesan AK, Ganesan S, Ganley IG, Gannagé M, Gao FB, Gao F, Gao JX, García Nannig L, García Véscovi E, Garcia-Macía M, Garcia-Ruiz C, Garg AD, Garg PK, Gargini R, Gassen NC, Gatica D, Gatti E, Gavard J, Gavathiotis E, Ge L, Ge P, Ge S, Gean PW, Gelmetti V, Genazzani AA, Geng J, Genschik P, Gerner L, Gestwicki JE, Gewirtz DA, Ghavami S, Ghigo E, Ghosh D, Giammarioli AM, Giampieri F, Giampietri C, Giatromanolaki A, Gibbings DJ, Gibellini L, Gibson SB, Ginet V, Giordano A, Giorgini F, Giovannetti E, Girardin SE, Gispert S, Giuliano S, Gladson CL, Glavic A, Gleave M, Godefroy N, Gogal RM Jr, Gokulan K, Goldman GH, Goletti D, Goligorsky MS, Gomes AV, Gomes LC, Gomez H, Gomez-Manzano C, Gómez-Sánchez R, Gonçalves DA, Goncu E, Gong Q, Gongora C, Gonzalez CB, Gonzalez-Alegre P, Gonzalez-Cabo P, González-Polo RA, Goping IS, Gorbea C, Gorbunov NV, Goring DR, Gorman AM, Gorski SM, Goruppi S, Goto-Yamada S, Gotor C, Gottlieb RA, Gozes I, Gozuacik D, Graba Y, Graef M, Granato GE, Grant GD, Grant S, Gravina GL, Green DR, Greenhough A, Greenwood MT, Grimaldi B, Gros F, Grose C, Groulx JF, Gruber F, Grumati P, Grune T, Guan JL, Guan KL, Guerra B, Guillen C, Gulshan K, Gunst J, Guo C, Guo L, Guo M, Guo W, Guo XG, Gust AA, Gustafsson ÅB, Gutierrez E, Gutierrez MG, Gwak HS, Haas A, Haber JE, Hadano S, Hagedorn M, Hahn DR, Halayko AJ, Hamacher-Brady A, Hamada K, Hamai A, Hamann A, Hamasaki M, Hamer I, Hamid Q, Hammond EM, Han F, Han W, Handa JT, Hanover JA, Hansen M, Harada M, Harhaji-Trajkovic L, Harper JW, Harrath AH, 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Mocroft A, Lundgren JD, Ross M, Fux CA, Reiss P, Moranne O, Morlat P, Monforte AdA, Kirk O, Ryom L [Contributors: Steering D, Powderly B, Shortman N, Moecklinghoff C, Reilly G, Franquet X, Ryom L, Hatleberg CI, Sabin CA, Kamara D, Smith C, Phillips A, Mocroft A, Bojesen A, Grevsen AL, Matthews C, Raben D, Lundgren JD, Brandt RS, Rickenbach M, Fanti I, Hillebreght M, Zaheri S, Gras L, Pernot E, Mourabi J, Sundström A, Delforge M, Fontas E, Torres F, McManus H, Wright S, Kristensen D, Sjøl A, Meidahl P, Helweg-Larsen J, Schmidt Iversen J, Kirk O, Reiss P, Smit C, Ross M, Fux CA, Morlat P, Moranne O, Kamara DA, Weber R, Pradier C, Friis-Møller N, Kowalska J, Sabin C, Law M, d'Arminio Monforte A, Dabis F, Bruyand M, Bonnet F, Bower M, Fätkenheuer G, Donald A, Grulich A, Prins JM, Kuijpers TW, Scherpbier HJ, van der Meer JTM, Wit FWMN, Godfried MH, van der Poll T, Nellen FJB, Geerlings SE, van Vugt M, Pajkrt D, Bos JC, Wiersinga WJ, van der Valk M, Goorhuis A, Hovius JW, van Eden J, Henderiks A, van Hes AMH, Mutschelknauss M, Nobel HE, Pijnappel FJJ, Westerman AM, Jurriaans S, Back NKT, Zaaijer HL, Berkhout B, Cornelissen MTE, Schinkel CJ, Thomas XV, de Ruyter Ziekenhuis A, van den Berge M, Stegeman A, Baas S, de Looff LH, Versteeg D, Pronk MJH, Ammerlaan HSM, Korsten-Vorstermans EMHM, de Munnik ES, Jansz AR, Tjhie J, Wegdam MCA, Deiman B, Scharnhorst V, Kinderziekenhuis E, van der Plas A, Weijsenfeld AM, van der Ende ME, de Vries-Sluijs TEMS, van Gorp ECM, Schurink CAM, Nouwen JL, Verbon A, Rijnders BJA, Bax HI, Hassing RJ, van der Feltz M, Bassant N, van Beek JEA, Vriesde M, van Zonneveld LM, de Oude-Lubbers A, van den Berg-Cameron HJ, Bruinsma-Broekman FB, de Groot J, de Man dZ, Broekhoven-Kruijne MJ, Schutten M, Osterhaus ADME, Boucher CAB, Driessen GJA, van Rossum AMC, van der Knaap LC, Visser E, Branger J, Duijf-van de Ven CJHM, Haag D, Schippers EF, van Nieuwkoop C, Brimicombe RW, van IJperen M, van der Hut G, Franck PFH, van Eeden A, Brokking W, Groot M, Damen M, Kwa IS, Groeneveld PHP, Bouwhuis JW, van den Berg JF, van Hulzen AGW, van der Bliek GL, Bor PCJ, Bloembergen P, Wolfhagen MJHM, Ruijs GJHM, Gasthuis K, van Lelyveld SFL, Soetekouw R, Hulshoff N, van der Prijt LMM, Schoemaker M, Bermon N, van der Reijden WA, Jansen R, Herpers BL, Veenendaal D, Kroon FP, Arend SM, de Boer MGJ, Bauer MP, Jolink H, Vollaard AM, Dorama W, Moons C, Claas ECJ, Kroes ACM, den Hollander JG, Pogany K, Kastelijns M, Smit JV, Smit E, Bezemer M, van Niekerk T, Pontesilli O, Lowe SH, Oude Lashof A, Posthouwer D, Ackens RP, Schippers J, Vergoossen R, Weijenberg Maes B, Savelkoul PHM, Loo IH, Zuiderzee MC, Weijer S, el Moussaoui R, Heitmuller M, Kortmann W, van Twillert G, Cohen Stuart JWT, Diederen BMW, Pronk D, van Truijen-Oud FA, Leyten EMS, Gelinck LBS, van Hartingsveld A, Meerkerk C, Wildenbeest GS, Mutsaers JAEM, Jansen CL, van Vonderen MGA, van Houte DPF, Dijkstra K, Faber S, Weel J, Kootstra GJ, Delsing CE, van der Burgvan de Plas M, Heins H, Lucas E, Brinkman K, Frissen PHJ, Blok WL, Schouten WEM, Bosma AS, Brouwer CJ, Geerders GF, Hoeksema K, Kleene MJ, van der Meché IB, Toonen AJM, Wijnands S, van Ogtrop ML, Koopmans PP, Keuter M, van der Ven AJAM, ter Hofstede HJM, Dofferhoff ASM, van Crevel R, Albers M, Bosch MEW, Grintjes-Huisman KJT, Zomer BJ, Stelma FF, Burger D, Richter C, van der Berg JP, Gisolf EH, Beest GT, van Bentum PHM, Langebeek N, Tiemessen R, Swanink CMA, Veenstra J, Lettinga KD, Spelbrink M, Sulman H, Witte E, Peerbooms PGH, Mulder JW, Vrouenraets SME, Lauw FN, van Broekhuizen MC, Paap H, Vlasblom DJ, Oudmaijer Sanders E, Smits PHM, Rosingh AW, Verhagen DWM, Geilings J, van Kasteren MEE, Brouwer AE, de Kruijf-van de Wiel BAFM, Kuipers M, Santegoets RMWJ, van der Ven B, Marcelis JH, Buiting AGM, Kabel PJ, Bierman WFW, Sprenger HG, Scholvinck EH, van Assen S, Wilting KR, Stienstra Y, de Groot-de Jonge H, van der Meulen PA, de Weerd DA, Niesters HGM, Riezebos-Brilman A, van Leer-Buter CC, Hoepelman AIM, Schneider MME, Mudrikova T, Ellerbroek PM, Oosterheert JJ, Arends JE, Barth RE, Wassenberg MWM, van Elst-Laurijssen DHM, Laan LM, van Oers-Hazelzet EEB, Patist J, Vervoort S, Nieuwenhuis HE, Frauenfelder R, Schuurman R, Verduyn-Lunel F, Wensing AMJ, Peters EJG, van Agtmael MA, Perenboom RM, Bomers M, de Vocht J, Elsenburg LJM, Pettersson AM, Vandenbroucke-Grauls CMJE, Ang CW, Geelen SPM, Wolfs TFW, Bont LJ, Nauta N, Bezemer DO, van Sighem AI, Hillebregt M, Kimmel V, Tong Y, Lascaris B, van den Boogaard R, Hoekstra P, de Lang A, Berkhout M, Grivell S, Jansen A, de Groot L, van den Akker M, Bergsma D, Lodewijk C, Meijering R, Peeck B, Raethke M, Ree C, Regtop R, Ruijs Y, Schoorl M, Tuijn E, Veenenberg L, Woudstra T, Bakker Y, de Jong A, Broekhoven M, Claessen E, Rademaker MJ, Munjishvili L, Kruijne E, Tuk B, Bouchet S, Breilh D, Chêne G, Dupon M, Fleury H, Gaborieau V, Lacoste D, Malvy D, Mercié P, Neau D, Pellegrin I, Pellegrin JL, Tchamgoué S, Fagard C, Lawson-Ayayi S, Richert L, Thiébaut R, Wittkop L, André K, Bernard N, Caunègre L, Cazanave C, Ceccaldi J, Chossat I, Courtault C, Dauchy FA, de Witte S, Dondia D, Dupont A, Duffau P, Dutronc H, Farbos S, Faure I, Gerard Y, Greib C, Hessamfar-Joseph M, Imbert Y, Lataste P, Lazaro E, Marie J, Mechain M, Meraud JP, Monlun E, Ochoa A, Pillot-Debelleix M, Pistone T, Raymond I, Receveur MC, Rispal P, Sorin L, Valette C, Vandenhende MA, Vareil MO, Viallard JF, Wille H, Wirth G, Moreau JF, Lafon ME, Reigadas S, Trimoulet P, Haramburu F, Miremont-Salamé G, Blaizeau MJ, Crespel I, Decoin M, Delveaux S, Diarra F, D'Ivernois C, Hanappier C, Leleux O, Le Marec F, Lenaud E, Mourali J, Pougetoux A, Uwamaliya-Nziyumvira B, Tsaranazy A, Valdes A, Conte V, Louis I, Palmer G, Sapparrart V, Touchard D, Petoumenos K, Bendall C, Moore R, Edwards S, Hoy J, Watson K, Roth N, Nicholson J, Bloch M, Franic T, Baker D, Vale R, Carr A, Cooper D, Chuah J, Ngieng M, Nolan D, Skett J, Calvo G, Mateu S, Domingo P, Sambeat MA, Gatell J, del Cacho E, Cadafalch J, Fuster M, Codina C, Sirera G, Vaqué A, de Wit S, Clumeck N, Necsoi C, Gennotte AF, Gerard M, Kabeya K, Konopnicki D, Libois A, Martin C, Payen MC, Semaille P, van Y, Neaton J, Bartsch G, El-Sadr WM, Krum E, Thompson G, Wentworth D, Luskin-Hawk R, Telzak E, Abrams DI, Cohn D, Markowitz N, Arduino R, Mushatt D, Friedland G, Perez G, Tedaldi E, Fisher E, Gordin F, Crane LR, Sampson J, Baxter J, Losso M, Kundro M, Vetter N, Zangerle R, Karpov I, Vassilenko A, Mitsura VM, Paduto D, Florence E, Vandekerckhove L, Hadziosmanovic V, Kostov K, Begovac J, Machala L, Jilich D, Sedlacek D, Kronborg G, Benfield T, Gerstoft J, Katzenstein T, Hansen ABE, Pedersen C, Møller NF, Ostergaard L, Dragsted UB, Nielsen LN, Zilmer K, Smidt J, Ristola M, Aho I, Katlama C, Viard JP, Girard PM, Cotte L, Duvivier C, Rockstroh J, Schmidt R, van Lunzen J, Degen O, Stellbrink HJ, Stefan C, Bogner J, Chkhartishvili N, Kosmidis J, Gargalianos P, Xylomenos G, Lourida P, Sambatakou H, Banhegyi D, Gottfredsson M, Mulcahy F, Yust I, Turner D, Burke M, Shahar E, Hassoun G, Elinav H, Haouzi M, Sthoeger ZM, Esposito R, Mazeu I, Mussini C, Mazzotta F, Gabbuti A, Vullo V, Lichtner M, Zaccarelli M, Antinori A, Acinapura R, D'Offizi G, Lazzarin A, Castagna A, Gianotti N, Galli M, Ridolfo A, Rozentale B, Uzdaviniene V, Matulionyte R, Staub T, Hemmer R, Ormaasen V, Maeland A, Bruun J, Knysz B, Gasiorowski J, Inglot M, Horban A, Bakowska E, Grzeszczuk A, Flisiak R, Parczewski M, Pynka M, Maciejewska K, Beniowski M, Mularska E, Smiatacz T, Gensing M, Jablonowska E, Malolepsza E, Wojcik K, Mozer-Lisewska I, Doroana M, Caldeira L, Mansinho K, Maltez F, Radoi R, Oprea C, Rakhmanova A, Trofimora T, Khromova I, Kuzovatova E, Jevtovic D, Shunnar A, Staneková D, Tomazic J, Moreno S, Rodriguez JM, Clotet B, Jou A, Paredes R, Tural C, Puig J, Bravo I, Gatell JM, Miró JM, Gutierrez M, Mateo G, Laporte JM, Blaxhult A, Flamholc L, Falconer K, Thalme A, Sonnerborg A, Ledergerber B, Cavassini M, Calmy A, Furrer H, Battegay M, Elzi L, Schmid P, Kravchenko E, Chentsova N, Frolov V, Kutsyna G, Baskakov I, Servitskiy S, Kuznetsova A, Kyselyova G, Gazzard B, Johnson AM, Simons E, Johnson MA, Orkin C, Weber J, Scullard G, Fisher M, Leen C, Lundgren J, Grarup J, Cozzi-Lepri A, Thiebaut R, Peters L, Fischer AH, Grønborg Laut K, Larsen JF, Podlekareva D, Grint D, Shepherd L, Schultze A, Morfeldt L, Thulin G, Åkerlund B, Koppel K, Karlsson A, Håkangård C, Moroni M, Angarano G, Armignacco O, Castelli F, Cauda R, Di Perri G, Iardino R, Ippolito G, Perno CF, von Schloesser F, Viale P, Ceccherini-Silberstein F, Girardi E, Lo Caputo S, Puoti M, Andreoni M, Ammassari A, Balotta C, Bonfanti P, Bonora S, Borderi M, Capobianchi R, Cingolani A, Cinque P, de Luca A, Di Biagio A, Gori A, Guaraldi G, Lapadula G, Madeddu G, Maggiolo F, Marchetti G, Marcotullio S, Monno L, Quiros Roldan E, Rusconi S, Cicconi P, Formenti T, Galli L, Lorenzini P, Giacometti A, Costantini A, Santoro C, Suardi C, Vanino E, Verucchi G, Minardi C, Quirino T, Abeli C, Manconi PE, Piano P, Vecchiet J, Falasca K, Sighinolfi L, Segala D, Cassola G, Viscoli G, Alessandrini A, Piscopo R, Mazzarello G, Mastroianni C, Belvisi V, Castelli AP, Rizzardini G, Ridolfo AL, Piolini R, Salpietro S, Carenzi L, Moioli MC, Puzzolante C, Abrescia N, Chirianni A, Guida MG, Onofrio M, Baldelli F, Francisci D, Parruti G, Ursini T, Magnani G, Ursitti MA, d'Avino A, Gallo L, Nicastri E, Capozzi M, Libertone R, Tebano G, Cattelan A, Mura MS, Caramello P, Orofino GC, Sciandra M, Pellizzer G, Manfrin V, Dollet K, Caissotti C, Dellamonica P, Bernard E, Cua E, de Salvador-Guillouet F, Durant J, Ferrando S, Dunais B, Mondain-Miton V, Naqvi A, Perbost I, Prouvost-Keller B, Pillet S, Pugliese P, Risso K, Roger PM, Aubert V, Bernasconi E, Böni J, Bucher HC, Burton-Jeangros C, Dollenmaier G, Egger M, Fehr J, Fellay J, Gorgievski M, Günthard H, Haerry D, Hasse B, Hirsch HH, Hoffmann M, Hösli I, Kahlert C, Kaiser L, Keiser O, Klimkait T, Kouyos R, Kovari H, Martinetti G, Martinez de Tejada B, Metzner K, Müller N, Nadal D, Nicca D, Pantaleo G, Rauch A, Regenass S, Rudin C, Schöni-Affolter F, Schüpbach J, Speck R, Tarr P, Telenti A, Trkola A, Vernazza P, Yerly S]] , Cumulative and current exposure to potentially nephrotoxic antiretrovirals and development of chronic kidney disease in HIV-positive individuals with a normal baseline estimated glomerular filtration rate: a prospective international cohort study. 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Mouser EEIM. Parasitic helminths and HIV-1 infection: the effect of immunomodulatory antigens. S.l.: s.n.; 2016. 152p. ISBN 978-94-6182-579-7 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B, Paxton WA; copromotor(s): de Jong EC, Pollakis G)
Mueller N, Das AT, Berkhout B, A Phylogenetic Survey on the Structure of the HIV-1 Leader RNA Domain That Encodes the Splice Donor Signal. VIRUSES-BASEL 2016;8 (7):200 [PubMed]
Müller N. Regulation of HIV-1 splicing. S.l.: s.n.; 2016. 155p. ISBN 978-94-6182-612-1 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): Das AT)
Op de Coul ELM, van Sighem A, Brinkman K, van Benthem BH, van der Ende ME, Geerlings S, Reiss P [Contributors: Prins JM, Kuijpers TW, Scherpbier HJ, van der Meer JTM, Wit FWMN, Godfried MH, Reiss P, van der Poll T, Nellen FJB, Geerlings SE, van Vugt M, Pajkrt D, Bos JC, Wiersinga WJ, van der Valk M, Goorhuis A, Hovius JW, van Eden J, Henderiks A, van Hes AMH, Mutschelknauss M, Nobel HE, Pijnappel FJJ, Westerman AM, Jurriaans S, Back NKT, Zaaijer HL, Berkhout B, Cornelissen MTE, Schinkel CJ, Thomas XV, van den Berge M, Stegeman A, Baas S, Hage de Looff L, Versteeg D, Pronk MJH, Ammerlaan HSM, Korsten-Vorstermans EMHM, de Munnik ES, Jansz AR, Tjhie J, Wegdam MCA, van der Plas A, Weijsenfeld AM, van der Ende ME, de Vries-Sluijs TEMS, van Gorp ECM, Schurink CAM, Nouwen JL, Verbon A, Rijnders BJA, Bax HI, Hassing RJ, van der Feltz M, Bassant N, van Beek JEA, Vriesde M, van Zonneveld LM, de Oude-Lubbers A, van den Berg-Cameron HJ, Bruinsma-Broekman FB, de Groot J, de Zeeuw-de Man M, Broekhoven-Kruijne MJ, Schutten M, Osterhaus ADME, Boucher CAB, Driessen GJA, van Rossum AMC, van der Knaap LC, Visser E, Branger J, Duijf-van de Ven CJHM, Schippers EF, van Nieuwkoop C, Brimicombe RW, van Ijperen JM, van der Hut G, Franck PFH, van Eeden A, Brokking W, Groot M, Damen M, Groeneveld PHP, Bouwhuis JW, van den Berg JF, van Hulzen AGW, van der Bliek GL, Bor PCJ, Bloembergen P, Wolfhagen MJHM, Ruijs GJHM, van Lelyveld SFL, Soetekouw R, Hulshoff N, van der Prijt LMM, Schoemaker M, Bermon N, van der Reijden WA, Jansen R, Herpers BL, Kroon FP, Arend SM, de Boer MGJ, Bauer MP, Jolink H, Vollaard AM, Dorama W, Moons C, Claas ECJ, Kroes ACM, den Hollander JG, Pogany K, Kastelijns M, Smit JV, Smit E, Bezemer M, van Niekerk T, Pontesilli O, Lowe SH, Oude Lashof A, Posthouwer D, Ackens RP, Schippers J, Vergoossen R, Weijenberg Maes B, Savelkoul PHM, Loo IH, Weijer S, el Moussaoui R, Heitmuller M, Kortmann W, van Twillert G, Pronk D, van Truijen-Oud FA, Leyten EMS, Gelinck LBS, van Hartingsveld A, Meerkerk C, Wildenbeest GS, Mutsaers JAEM, Jansen CL, van Vonderen MGA, van Houte DPF, Dijkstra K, Faber S, Weel J, Kootstra GJ, Delsing CE, van der Burg-van de Plas M, Heins H, Lucas E, Brinkman K, Frissen PHJ, Blok WL, Schouten WEM, van den Berk GEL, Bosma AS, Brouwer CJ, Geerders GF, Hoeksema K, Kleene MJ, van der Meché IB, Toonen AJM, Wijnands S, van Ogtrop ML, Koopmans PP, Keuter M, van der Ven AJAM, ter Hofstede HJM, Dofferhoff ASM, van Crevel R, Albers M, Bosch MEW, Grintjes-Huisman KJT, Zomer BJ, Stelma FF, Burger D, Richter C, van der Berg JP, Gisolf EH, ter Beest G, van Bentum PHM, Langebeek N, Tiemessen R, Swanink CMA, Veenstra J, Lettinga KD, Spelbrink M, Sulman H, Witte E, Peerbooms PGH, Mulder JW, Vrouenraets SME, Lauw FN, van Broekhuizen MC, Paap H, Vlasblom DJ, Oudmaijer Sanders E, Smits PHM, Rosingh AW, Verhagen DWM, Geilings J, van Kasteren MEE, Brouwer AE, de Kruijf-van de Wiel BAFM, Kuipers M, Santegoets RMWJ, van der Ven B, Marcelis JH, Buiting AGM, Kabel PJ, Bierman WFW, Sprenger HG, Scholvinck EH, van Assen S, Wilting KR, Stienstra Y, de Groot-de Jonge H, van der Meulen PA, de Weerd DA, Niesters HGM, Riezebos-Brilman A, van Leer-Buter CC, Schneider MME, Mudrikova T, Ellerbroek PM, Oosterheert JJ, Arends JE, Barth RE, Wassenberg MWM, van Elst-Laurijssen DHM, Laan LM, van Oers-Hazelzet EEB, Patist J, Vervoort S, Nieuwenhuis HE, Frauenfelder R, Schuurman R, Verduyn-Lunel F, Wensing AMJ, Peters EJG, van Agtmael MA, Perenboom RM, Bomers M, de Vocht J, Elsenburg LJM, Pettersson AM, Vandenbroucke-Grauls CMJE, Ang CW, Geelen SPM, Wolfs TFW, Bont LJ, Nauta N, Bezemer DO, Gras L, van Sighem AI, Smit C, Zaheri S, Hillebregt M, Kimmel V, Tong Y, Lascaris B, van den Boogaard R, Hoekstra P, de Lang A, Berkhout M, Grivell S, Jansen A, de Groot L, van den Akker M, Bergsma D, Lodewijk C, Meijering R, Peeck B, Raethke M, Ree C, Regtop R, Ruijs Y, Schoorl M, Tuijn E, Veenenberg L, Woudstra T, Bakker Y, de Jong A, Broekhoven M, Claessen E, Rademaker MJ, Munjishvili L, Kruijne E, Tuk B]] , Factors associated with presenting late or with advanced HIV disease in the Netherlands, 1996-2014: results from a national observational cohort. BMJ OPEN 2016;6 (1):e009688 [PubMed]
Pasternak AO, Berkhout B, HIV Reservoir: Finding the Right Needles in a Needlestack. CELL HOST MICROBE 2016;20 (3):280-282 [PubMed]
Pasternak AO, DeMaster LK, Kootstra NA, Reiss P, O'Doherty U, Berkhout B, Minor Contribution of Chimeric Host-HIV Readthrough Transcripts to the Level of HIV Cell-Associated gag RNA. J VIROL 2016;90 (2):1148-1151 [PubMed]
Sliepen K. HIV-1 envelope trimer fusion proteins and their applications. S.l.: s.n.; 2016. 183p. ISBN 978-94-6299-359-4 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): Sanders RW)
van der Velden YU, Kleibeuker W, Harwig A, Klaver B, Siteur-Van Rijnstra E, Frankin E, Berkhout B, Das AT, Construction of Nef-positive doxycycline-dependent HIV-1 variants using bicistronic expression elements. VIROLOGY 2016;488 (-):96-107 [PubMed]
van Hemert F, Berkhout B, Nucleotide composition of the Zika virus RNA genome and its codon usage. VIROL J 2016;13 (1):95 [PubMed]
van Hemert F, van der Kuyl AC, Berkhout B, Impact of the biased nucleotide composition of viral RNA genomes on RNA structure and codon usage. J GEN VIROL 2016;97 (10):2608-2619 [PubMed]
Wang G, Zhao N, Berkhout B, Das AT, A Combinatorial CRISPR-Cas9 Attack on HIV-1 DNA Extinguishes All Infectious Provirus in Infected T Cell Cultures. CELL REP 2016;17 (11):2819-2826 [PubMed]
Wang G, Zhao N, Berkhout B, Das AT, CRISPR-Cas9 Can Inhibit HIV-1 Replication but NHEJ Repair Facilitates Virus Escape. MOL THER 2016;24 (3):522-526 [PubMed]
Berkhout B, With a Little Help from my Enteric Microbial Friends. FRONT MED 2015;2:30 [PubMed]
Berkhout B, Bukrinsky M, Jan van der Noordaa (1934-2015); A Virologist Pur Sang. VIRUSES-BASEL 2015;7 (9):5016-5017 [PubMed]
Berkhout B, Das AT, On the primer binding site mutation that appears and disappears during HIV and SIV replication. RETROVIROLOGY 2015;12:75 [PubMed]
Berkhout B, Ertl HCJ, Weinberg MS, Gene Therapy for HIV and Chronic Infections Preface. ADV EXP MED BIOL 2015;848:v-vii [PubMed]
Berkhout B, van der Velden YU, ABX464: a good drug candidate instead of a magic bullet. RETROVIROLOGY 2015;12 (1):64 [PubMed]
Berkhout B, van Hemert F, On the biased nucleotide composition of the human coronavirus RNA genome. VIRUS RES 2015;202:41-47 [PubMed]
Bezemer D, Cori A, Ratmann O, van Sighem A, Hermanides HS, Dutilh BE, Gras L, Rodrigues Faria N, van den Hengel R, Duits AJ, Reiss P, de Wolf F, Fraser C [Contributors: Prins JM, Kuijpers TW, Scherpbier HJ, van der Meer JTM, Wit FWMN, Godfried MH, Reiss P, van der Poll T, Nellen FJB, Geerlings SE, van Vugt M, Pajkrt D, Bos JC, Wiersinga WJ, van der Valk M, Goorhuis A, Hovius JW, van Eden J, Henderiks A, van Hes AMH, Mutschelknauss M, Nobel HE, Pijnappel FJJ, Westerman AM, Jurriaans S, Back NKT, Zaaijer HL, Berkhout B, Cornelissen MTE, Schinkel CJ, Thomas XV, van den Berge M, Stegeman A, Baas S, de Looff LH, Versteeg D, Pronk MJH, Ammerlaan HSM, Korsten-Vorstermans EMHM, de Munnik ES, Jansz AR, Tjhie J, Wegdam MCA, Deiman B, Scharnhorst V, van der Plas A, Weijsenfeld AM, van der Ende ME, de Vries-Sluijs TEMS, van Gorp ECM, Schurink CAM, Nouwen JL, Verbon A, Rijnders BJA, Bax HI, Hassing RJ, van der Feltz M, Bassant N, van Beek JEA, Vriesde M, van Zonneveld LM, de Oude-Lubbers A, van den Berg-Cameron HJ, Bruinsma-Broekman FB, de Groot J, de Zeeuw-de Man M, Schutten M, Osterhaus ADME, Boucher CAB, Driessen GJA, van Rossum AMC, van der Knaap LC, Visser E, Branger J, Duijf-van de Ven CJHM, Schippers EF, van Nieuwkoop C, Brimicombe RW, van Ijperen JM, van der Hut G, Franck PFH, van Eeden A, Brokking W, Groot M, Elsenburg LJM, Damen M, Kwa IS, Groeneveld PHP, Bouwhuis JW, van den Berg JF, van Hulzen AGW, van der Bliek GL, Bor PCJ, Bloembergen P, Wolfhagen MJHM, Ruijs GJHM, Kroon FP, Arend SM, de Boer MGJ, Bauer MP, Jolink H, Vollaard AM, Dorama W, van Holten N, Claas ECJ, Kroes ACM, den Hollander JG, Pogany K, Kastelijns M, Smit JV, Smit E, Bezemer M, van Niekerk T, Pontesilli O, Lowe SH, Oude Lashof A, Posthouwer D, Ackens RP, Schippers J, Vergoossen R, Maes BW, Savelkoul PHM, Loo IH, Mulder JW, Vrouenraets SME, Lauw FN, van Broekhuizen MC, Paap H, Vlasblom DJ, Sanders EO, Smits PHM, Rosingh AW, Weijer S, el Moussaoui R, Bosma AS, Kortmann W, van Twillert G, Stuart JWTC, Diederen BMW, Pronk D, van Truijen-Oud FA, van der Reijden WA, Jansen R, Leyten EMS, Gelinck LBS, van Hartingsveld A, Meerkerk C, Wildenbeest GS, Mutsaers JAEM, Jansen CL, van Vonderen MGA, van Houte DPF, Kampschreur LM, Dijkstra K, Faber S, Weel J, Kootstra GJ, Delsing CE, van der Burg-van de Plas M, Heins H, Lucas E, Brinkman K, Frissen PHJ, Blok WL, Schouten WEM, van den Berk GEL, Brouwer CJ, Geerders GF, Hoeksema K, Kleene MJ, van der Meché IB, Toonen AJM, Wijnands S, van Ogtrop ML, Koopmans PP, Keuter M, van der Ven AJAM, ter Hofstede HJM, Dofferhoff ASM, van Crevel R, Albers M, Bosch MEW, Grintjes-Huisman KJT, Zomer BJ, Stelma FF, Burger D, Richter C, van der Berg JP, Gisolf EH, ter Beest G, van Bentum PHM, Langebeek N, Tiemessen R, Swanink CMA, Veenstra J, Lettinga KD, Spelbrink M, Sulman H, Witte E, Peerbooms PGH, van Lelyveld SFL, Soetekouw R, Hulshoff N, van der Prijt LMM, van der Swaluw J, Bermon N, Herpers BL, Veenendaal D, Verhagen DWM, Geilings J, van Kasteren MEE, Brouwer AE, de Kruijf-van de Wiel BAFM, Kuipers M, Santegoets RMWJ, van der Ven B, Marcelis JH, Buiting AGM, Kabel PJ, Bierman WFW, Sprenger HG, Scholvinck EH, van Assen S, Wilting KR, Stienstra Y, de Groot-de Jonge H, van der Meulen PA, de Weerd DA, Niesters HGM, Riezebos-Brilman A, van Leer-Buter CC, Hoepelman AIM, Schneider MME, Mudrikova T, Ellerbroek PM, Oosterheert JJ, Arends JE, Barth RE, Wassenberg MWM, van Elst-Laurijssen DHM, van Oers-Hazelzet EEB, Patist J, Vervoort S, Nieuwenhuis HE, Frauenfelder R, Schuurman R, Verduyn-Lunel F, Wensing AMJ, Peters EJG, van Agtmael MA, Bomers M, de Vocht J, Heitmuller M, Laan LM, Pettersson AM, Vandenbroucke-Grauls CMJE, Ang CW, Geelen SPM, Wolfs TFW, Bont LJ, Nauta N, Winkel C, Durand A, Muskiet F, Voigt R, van der Meer I, Bezemer DO, Gras L, van Sighem AI, Smit C, Zaheri S, Hillebregt M, de Jong A, Bergsma D, Hoekstra P, de Lang A, Berkhout M, Grivell S, Jansen A, Rademaker MJ, Raethke M, de Groot L, van den Akker M, Bakker Y, Broekhoven M, Claessen E, El Berkaoui A, Kruijne E, Lodewijk C, Meijering R, Munjishvili L, Peeck B, Ree C, Regtop R, Ruijs Y, Schoorl M, Schnörr S, Tuijn E, Veenenberg L, van der Vliet S, Woudstra T, Tuk B]] , Dispersion of the HIV-1 Epidemic in Men Who Have Sex with Men in the Netherlands: A Combined Mathematical Model and Phylogenetic Analysis. PLOS MED 2015;12 (11):e1001898; discussion e1001898 [PubMed]
de Taeye SW, Ozorowski G, Torrents de la Peña A, Guttman M, Julien JP, van den Kerkhof TLGM, Burger JA, Pritchard LK, Pugach P, Yasmeen A, Crampton J, Hu J, Bontjer I, Torres JL, Arendt H, DeStefano J, Koff WC, Schuitemaker H, Eggink D, Berkhout B, Dean H, Labranche C, Crotty S, Crispin M, Montefiori DC, Klasse PJ, Lee KK, Moore JP, Wilson IA, Ward AB, Sanders RW, Immunogenicity of Stabilized HIV-1 Envelope Trimers with Reduced Exposure of Non-neutralizing Epitopes. CELL 2015;163 (7):1702-1715 [PubMed]
Harwig A. HIV-1 in the RNA world: Transcription regulation, miRNAs and antiviral RNAs. S.l.: s.n.; 2015. 186p. ISBN 978-94-6182-537-7 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): Das AT)
Harwig A, Berkhout B, Hiv-1-transcriptie: recente verrassingen. HIV BULLETIN 2015;3:7-9
Harwig A, Das AT, Berkhout B, HIV-1 RNAs: sense and antisense, large mRNAs and small siRNAs and miRNAs. CURR OPIN HIV AIDS 2015;10 (2):103-109 [PubMed]
Harwig A, Herrera-Carrillo E, Jongejan A, van Kampen AH, Berkhout B, Deep Sequence Analysis of AgoshRNA Processing Reveals 3' A Addition and Trimming. MOL THER-NUCL ACIDS 2015;4:e247 [PubMed]
Herrera-Carrillo E, Berkhout B, Bone Marrow Gene Therapy for HIV/AIDS. VIRUSES-BASEL 2015;7 (7):3910-3936 [PubMed]
Herrera-Carrillo E, Berkhout B, Gene Therapy Strategies to Block HIV-1 Replication by RNA Interference. ADV EXP MED BIOL 2015;848:71-95 [PubMed]
Herrera-Carrillo E, Berkhout B, Potential mechanisms for cell-based gene therapy to treat HIV/AIDS. EXPERT OPIN THER TAR 2015;19 (2):245-263 [PubMed]
Herrera-Carrillo E, Berkhout B, The impact of HIV-1 genetic diversity on the efficacy of a combinatorial RNAi-based gene therapy. GENE THER 2015;22 (6):485-495 [PubMed]
Herrera-Carrillo E, Harwig A, Berkhout B, Toward optimization of AgoshRNA molecules that use a non-canonical RNAi pathway: variations in the top and bottom base pairs. RNA BIOL 2015;12 (4):447-456 [PubMed]
Liu YP, Karg M, Harwig A, Herrera-Carrillo E, Jongejan A, van Kampen A, Berkhout B, Mechanistic insights on the Dicer-independent AGO2-mediated processing of AgoshRNAs. RNA BIOL 2015;12 (1):92-100 [PubMed]
Liu YP, Karg M, Herrera-Carrillo E, Berkhout B, Towards Antiviral shRNAs Based on the AgoshRNA Design. PLOS ONE 2015;10 (6):e0128618 [PubMed]
Mirabelli C, Surdo M, van Hemert F, Lian Z, Salpini R, Cento V, Cortese MF, Aragri M, Pollicita M, Alteri C, Bertoli A, Berkhout B, Micheli V, Gubertini G, Santoro MM, Romano S, Visca M, Bernassola M, Longo R, de Sanctis GM, Trimoulet P, Fleury H, Marino N, Mazzotta F, Cappiello G, Spanò A, Sarrecchia C, Zhang JM, Andreoni M, Angelico M, Verheyen J, Perno CF, Svicher V, Specific mutations in the C-terminus domain of HBV surface antigen significantly correlate with low level of serum HBV-DNA in patients with chronic HBV infection. J INFECTION 2015;70 (3):288-298 [PubMed]
Mocroft A, Lundgren JD, Ross M, Law M, Reiss P, Kirk O, Smith C, Wentworth D, Neuhaus J, Fux CA, Moranne O, Morlat P, Johnson MA, Ryom L [Contributors: Lundgren JD, Powderly B, Shortman N, Moecklinghoff C, Reilly G, Franquet X, Sabin CA, Phillips A, Kirk O, Reiss P, Weber R, Pradier C, Law M, d'Arminio Monforte A, Dabis F, El-Sadr WM, de Wit S, Ryom L, Kamara D, Smith C, Mocroft A, Tverland J, Mansfeld M, Nielsen J, Raben D, Salbøl Brandt R, Rickenbach M, Fanti I, Krum E, Hillebregt M, Geffard S, Sundström A, Delforge M, Fontas E, Torres F, McManus H, Wright S, Kjær J, Sjøl A, Meidahl P, Helweg-Larsen J, Schmidt Iversen J, Ross M, Fux CA, Morlat P, Moranne O, Kesselring AM, Kamara DA, Friis-Møller N, Kowalska J, Sabin C, Bruyand M, Bower M, Fätkenheuer G, Donald A, Grulich A, Prins JM, Kuijpers TW, Scherpbier HJ, van der Meer JTM, Wit FWMN, Godfried MH, van der Poll T, Nellen FJB, Geerlings SE, van Vugt M, Pajkrt D, Bos JC, Wiersinga WJ, van der Valk M, Goorhuis A, Hovius JW, van Eden J, Henderiks A, van Hes AMH, Mutschelknauss M, Nobel HE, Pijnappel FJJ, Westerman AM, Jurriaans S, Back NKT, Zaaijer HL, Berkhout B, Cornelissen MTE, Schinkel CJ, Thomas XV, de Ruyter Ziekenhuis A, van den Berge M, Stegeman A, Baas S, Hage de Looff L, Versteeg D, Pronk MJH, Ammerlaan HSM, Korsten-Vorstermans EMHM, de Munnik ES, Jansz AR, Tjhie J, Wegdam MCA, Deiman B, Scharnhorst V, van der Plas A, Weijsenfeld AM, van der Ende ME, de Vries-Sluijs TEMS, van Gorp ECM, Schurink CAM, Nouwen JL, Verbon A, Rijnders BJA, Bax HI, Hassing RJ, van der Feltz M, Bassant N, van Beek JEA, Vriesde M, van Zonneveld LM, de Oude-Lubbers A, van den Berg-Cameron HJ, Bruinsma-Broekman FB, de Groot J, de Zeeuw-de Man M, Broekhoven-Kruijne MJ, Schutten M, Osterhaus ADME, Boucher CAB, Driessen GJA, van Rossum AMC, van der Knaap LC, Visser E, Branger J, Duijf-van de Ven CJHM, Schippers EF, van Nieuwkoop C, Brimicombe RW, van Ijperen JM, van der Hut G, Franck PFH, van Eeden A, Brokking W, Groot M, Damen M, Kwa IS, Groeneveld PHP, Bouwhuis JW, van den Berg JF, van Hulzen AGW, van der Bliek GL, Bor PCJ, Bloembergen P, Wolfhagen MJHM, Ruijs GJHM, Gasthuis K, van Lelyveld SFL, Soetekouw R, Hulshoff N, van der Prijt LMM, Schoemaker M, Bermon N, van der Reijden WA, Jansen R, Herpers BL, Veenendaal D, Kroon FP, Arend SM, de Boer MGJ, Bauer MP, Jolink H, Vollaard AM, Dorama W, Moons C, Claas ECJ, Kroes ACM, den Hollander JG, Pogany K, Kastelijns M, Smit JV, Smit E, Bezemer M, van Niekerk T, Pontesilli O, Lowe SH, Oude Lashof A, Posthouwer D, Ackens RP, Schippers J, Vergoossen R, Weijenberg Maes B, Savelkoul PHM, Loo IH, Weijer S, el Moussaoui R, Heitmuller M, Kortmann W, van Twillert G, Cohen Stuart JWT, Diederen BMW, Pronk D, van Truijen-Oud FA, Leyten EMS, Gelinck LBS, van Hartingsveld A, Meerkerk C, Wildenbeest GS, Mutsaers JAEM, Jansen CL, van Vonderen MGA, van Houte DPF, Dijkstra K, Faber S, Weel J, Kootstra GJ, Delsing CE, van der Burg-van de Plas M, Heins H, Lucas E, Brinkman K, Frissen PHJ, Blok WL, Schouten WEM, Bosma AS, Brouwer CJ, Geerders GF, Hoeksema K, Kleene MJ, van der Meché IB, Toonen AJM, Wijnands S, van Ogtrop ML, Koopmans PP, Keuter M, van der Ven AJAM, ter Hofstede HJM, Dofferhoff ASM, van Crevel R, Albers M, Bosch MEW, Grintjes-Huisman KJT, Zomer BJ, Stelma FF, Burger D, Richter C, van der Berg JP, Gisolf EH, ter Beest G, van Bentum PHM, Langebeek N, Tiemessen R, Swanink CMA, Veenstra J, Lettinga KD, Spelbrink M, Sulman H, Witte E, Peerbooms PGH, Mulder JW, Vrouenraets SME, Lauw FN, van Broekhuizen MC, Paap H, Vlasblom DJ, Oudmaijer Sanders E, Smits PHM, Rosingh AW, Verhagen DWM, Geilings J, van Kasteren MEE, Brouwer AE, de Kruijf-van de Wiel BAFM, Kuipers M, Santegoets RMWJ, van der Ven B, Marcelis JH, Buiting AGM, Kabel PJ, Bierman WFW, Sprenger HG, Scholvinck EH, van Assen S, Wilting KR, Stienstra Y, de Groot-de Jonge H, van der Meulen PA, de Weerd DA, Niesters HGM, Riezebos-Brilman A, van Leer-Buter CC, Hoepelman AIM, Schneider MME, Mudrikova T, Ellerbroek PM, Oosterheert JJ, Arends JE, Barth RE, Wassenberg MWM, van Elst-Laurijssen DHM, Laan LM, van Oers-Hazelzet EEB, Patist J, Vervoort S, Nieuwenhuis HE, Frauenfelder R, Schuurman R, Verduyn-Lunel F, Wensing AMJ, Peters EJG, van Agtmael MA, Perenboom RM, Bomers M, de Vocht J, Elsenburg LJM, Pettersson AM, Vandenbroucke-Grauls CMJE, Ang CW, Geelen SPM, Wolfs TFW, Bont LJ, Nauta N, Bezemer DO, Gras L, van Sighem AI, Smit C, Zaheri S, Kimmel V, Tong Y, Lascaris B, van den Boogaard R, Hoekstra P, de Lang A, Berkhout M, Grivell S, Jansen A, de Groot L, van den Akker M, Bergsma D, Lodewijk C, Meijering R, Peeck B, Raethke M, Ree C, Regtop R, Ruijs Y, Schoorl M, Tuijn E, Veenenberg L, Woudstra T, Bakker Y, de Jong A, Broekhoven M, Claessen E, Rademaker MJ, Munjishvili L, Kruijne E, Tuk B, Bonnet F, Dupon M, Chêne G, Breilh D, Fleury H, Malvy D, Mercié P, Pellegrin I, Neau D, Pellegrin JL, Bouchet S, Gaborieau V, Lacoste D, Tchamgoué S, Thiébaut R, Lawson-Ayayi S, Wittkop L, Bernard N, Hessamfar M, Vandenhende MA, Dauchy FA, Dutronc H, Longy-Boursier M, Duffau P, Schmeltz JR, Pistone T, Receveur MC, Cazanave C, Ochoa A, Vareil MO, Viallard JF, Greib C, Lazaro E, Lafon ME, Reigadas S, Trimoulet P, Molimard M, Titier K, Moreau JF, Haramburu F, Miremont-Salamé G, Dupont A, Gerard Y, André K, Bonnal F, Farbos S, Gemain MC, Ceccaldi J, de Witte S, Courtault C, Monlun E, Lataste P, Meraud JP, Chossat I, Blaizeau MJ, Conte V, Decoin M, Delaune J, Delveaux S, Diarra F, D'Ivernois C, Frosch A, Hannapier C, Lenaud E, Leleux O, Le Marec F, Leray J, Louis I, Palmer G, Pougetoux A, Sicard X, Uwamaliya-Nziyumvira DTB, Petoumenos K, Bendall C, Moore R, Edwards S, Hoy J, Watson K, Roth N, Nicholson J, Bloch M, Franic T, Baker D, Vale R, Carr A, Cooper D, Chuah J, Ngieng M, Nolan D, Skett J, Calvo G, Mateu S, Domingo P, Sambeat MA, Gatell J, del Cacho E, Cadafalch J, Fuster M, Codina C, Sirera G, Vaqué A, Clumeck N, Necsoi C, Gennotte AF, Gerard M, Kabeya K, Konopnicki D, Libois A, Martin C, Payen MC, Semaille P, van Laethem Y, Neaton J, Bartsch G, Thompson G, Wentworth D, Luskin-Hawk R, Telzak E, Abrams DI, Cohn D, Markowitz N, Arduino R, Mushatt D, Friedland G, Perez G, Tedaldi E, Fisher E, Gordin F, Crane LR, Sampson J, Baxter J, Lundgren J, Cozzi-Lepri A, Grint D, Podlekareva D, Peters L, Reekie J, Fischer AH, Losso M, Elias C, Vetter N, Zangerle R, Karpov I, Vassilenko A, Mitsura VM, Suetnov O, Colebunders R, Vandekerckhove L, Hadziosmanovic V, Kostov K, Begovac J, Machala L, Jilich D, Sedlacek D, Kronborg G, Benfield T, Larsen M, Gerstoft J, Katzenstein T, Hansen E, Skinhøj P, Pedersen C, Ostergaard L, Zilmer K, Smidt J, Ristola M, Katlama C, Viard JP, Girard PM, Livrozet JM, Vanhems P, Rockstroh J, Schmidt R, van Lunzen J, Degen O, Stellbrink HJ, Staszewski S, Bickel M, Kosmidis J, Gargalianos P, Xylomenos G, Perdios J, Panos G, Filandras A, Karabatsaki E, Sambatakou H, Banhegyi D, Mulcahy F, Yust I, Turner D, Burke M, Pollack S, Hassoun G, Maayan S, Vella S, Esposito R, Mazeu I, Mussini C, Arici C, Pristera R, Mazzotta F, Gabbuti A, Vullo V, Lichtner M, Chirianni A, Montesarchio E, Gargiulo M, Antonucci G, Testa A, Narciso P, Vlassi C, Zaccarelli M, Lazzarin A, Castagna A, Gianotti N, Galli M, Ridolfo A, Rozentale B, Zeltina I, Chaplinskas S, Hemmer R, Staub T, Ormaasen V, Maeland A, Bruun J, Knysz B, Gasiorowski J, Horban A, Bakowska E, Grzeszczuk A, Flisiak R, Boron-Kaczmarska A, Pynka M, Parczewski M, Beniowski M, Mularska E, Trocha H, Jablonowska E, Malolepsza E, Wojcik K, Antunes F, Doroana M, Caldeira L, Mansinho K, Maltez F, Duiculescu D, Rakhmanova A, Zakharova N, Petersburg S, Buzunova S, Jevtovic D, Mokráš M, Staneková D, Tomazic J, González-Lahoz J, Soriano V, Labarga P, Medrano J, Moreno S, Rodriguez JM, Clotet B, Jou A, Paredes R, Tural C, Puig J, Bravo I, Gatell JM, Miró JM, Gutierrez M, Mateo G, Karlsson A, Flamholc L, Ledergerber B, Francioli P, Cavassini M, Hirschel B, Boffi E, Furrer H, Battegay M, Elzi L, Kravchenko E, Chentsova N, Frolov V, Kutsyna G, Servitskiy S, Krasnov M, Barton S, Johnson AM, Mercey D, Johnson MA, Murphy M, Weber J, Scullard G, Fisher M, Leen C, Morfeldt L, Thulin G, Åkerlund B, Koppel K, Håkangård C, Moroni M, Angarano G, Antinori A, Armignacco O, Castelli F, Cauda R, Di Perri G, Iardino R, Ippolito G, Perno CF, von Schloesser F, Viale P, Ceccherini-Silberstein F, Girardi E, Lo Caputo S, Puoti M, Andreoni M, Ammassari A, Balotta C, Bonfanti P, Bonora S, Borderi M, Capobianchi R, Cingolani A, Cinque P, de Luca A, Di Biagio A, Gori A, Guaraldi G, Lapadula G, Madeddu G, Maggiolo F, Marchetti G, Marcotullio S, Monno L, Quiros Roldan E, Rusconi S, Cicconi P, Formenti T, Galli L, Lorenzini P, Giacometti A, Costantini A, Santoro C, Suardi C, Vanino E, Verucchi G, Minardi C, Quirino T, Abeli C, Manconi PE, Piano P, Vecchiet J, Falasca K, Sighinolfi L, Segala D, Cassola G, Viscoli G, Alessandrini A, Piscopo R, Mazzarello G, Mastroianni C, Belvisi V, Caramma I, Castelli AP, Rizzardini G, Ridolfo AL, Piolini R, Salpietro S, Carenzi L, Moioli MC, Puzzolante C, Abrescia N, Guida MG, Onofrio M, Baldelli F, Francisci D, Parruti G, Ursini T, Magnani G, Ursitti MA, d'Avino A, Gallo L, Nicastri E, Acinapura R, Capozzi M, Libertone R, Tebano G, Cattelan A, Mura MS, Caramello P, Orofino GC, Sciandra M, Pellizzer G, Manfrin V, Dollet K, Caissotti C, Dellamonica P, Roger PM, Bernard E, Cua E, de Salvador-Guillouet F, Durant J, Ferrando S, Dunais B, Mondain-Miton V, Perbost I, Prouvost-Keller B, Pugliese P, Naqvi A, Pillet S, Risso K, Aubert V, Barth J, Bernasconi E, Böni J, Bucher HC, Burton-Jeangros C, Calmy A, Egger M, Fehr J, Fellay J, Gorgievski M, Günthard H, Haerry D, Hasse B, Hirsch HH, Hösli I, Kahlert C, Kaiser L, Keiser O, Klimkait T, Kovari H, Martinetti G, Martinez de Tejada B, Metzner K, Müller N, Nadal D, Pantaleo G, Rauch A, Regenass A, Rudin C, Schmid P, Schultze D, Schöni-Affolter F, Schüpbach J, Speck R, Taffé P, Tarr P, Telenti A, Trkola A, 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Pollakis G, Baan E, van Werkhoven MB, Berkhout B, Bakker M, Jurriaans S, Paxton WA, Association between gp120 envelope V1V2 and V4V5 variable loop profiles in a defined HIV-1 transmission cluster. AIDS 2015;29 (10):1161-1171 [PubMed]
Roy U, Berkhout B. HIV infection and adipose tissue resident stem cells: their involvement in pathology and treatment in: Hayat MA, editors. Stem Cells and Cancer Stem Cells, Therapeutic applications in disease and injury, Volume 13. Dordrecht: Springer Netherlands; 2015. 13, p. 21-34
Schoffelen AF, Smit C, van Lelyveld SFL, Vogt L, Bauer MP, Reiss P, Hoepelman AIM, Barth RE [Contributors: Prins JM, Kuijpsers TW, Scherpbier HJ, van der Meer JTM, Wit FWMN, Godfried MH, Reiss P, van der Poll T, Nellen FJB, Lange JMA, Geerlings SE, van Vugt M, Pajkrt D, Bos JC, Wiersinga WJ, van der Valk M, Goorhuis A, Hovius JW, van Eden J, Henderiks A, van Hes AMH, Mutschelknauss M, Nobel HE, Pijnappel FJJ, Westerman AM, Jurriaans S, Back NKT, Zaaijer HL, Berkhout B, Cornelissen MTE, Schinkel CJ, Thomas XV, van den Berge M, Stegeman A, Baas S, Sabbe L, Goudswaard J, Pronk MJH, Ammerlaan HSM, Korsten-Vorstermans EMHM, de Munnik ES, Jansz AR, Tjhie J, van der Plas A, Weijsenfeld AM, van der Ende ME, de Vries-Sluijs TEMS, van Gorp ECM, Schurink CAM, Nouwen JL, Verbon A, Rijnders BJA, Bax HI, Hassing RJ, van der Feltz M, Bassant N, van Beek JEA, Vriesde M, van Zonneveld LM, de Oude-Lubbers A, van den Berg-Cameron HJ, Bruinsma-Broekman FB, de Groot J, de Zeeuw-de Man M, Broekhoven-Kruijne MJ, Schutten M, Osterhaus ADME, Boucher CAB, Driessen GJA, van Rossum AMC, van der Knaap LC, Visser E, Branger J, Duijf-van de Ven CJHM, Schippers EF, van Nieuwkoop C, Brimicombe RW, van Ijperen JM, van der Hut G, Franck PFH, van Eeden A, Brokking W, Groot M, Damen M, Kwa IS, Groeneveld PHP, Bouwhuis JW, van den Berg JF, van Hulzen AGW, van der Bliek GL, Bor PCJ, Bloembergen P, Wolfhagen MJHM, Ruijs GJHM, ten Kate RW, Soetekouw R, Hulshoff N, van der Prijt LMM, Schoemaker M, Bermon N, van der Reijden WA, Jansen R, Kroon FP, Arend SM, de Boer MGJ, Bauer MP, Jolink H, Vollaard AM, Dorama W, Moons C, Claas ECJ, Kroes ACM, den Hollander JG, Pogany K, Kastelijns M, Smit JV, Smit E, Bezemer M, van Niekerk T, Pontesilli O, Lowe SH, Oude Lashof A, Posthouwer D, Ackens RP, Schippers J, Vergoossen R, Maes BW, Savelkoul PHM, Loo IH, Weijer S, el Moussaoui R, Heitmuller M, Kortmann W, van Twillert G, Stuart JWTC, Diederen BMW, Pronk D, van Truijen-Oud FA, Leyten EMS, Gelinck LBS, van Hartingsveld A, Meerkerk C, Wildenbeest GS, Mutsaers JAEM, Jansen CL, van Vonderen MGA, van Houte DPF, Dijkstra K, Faber S, Weel J, Kootstra GJ, Delsing CE, van der Burg-van de Plas M, Heins H, Lucas E, Brinkman K, Frissen PHJ, Blok WL, Schouten WEM, Bosma AS, Brouwer CJ, Geerders GF, Hoeksema K, Kleene MJ, van der Meché IB, Toonen AJM, Wijnands S, van Ogtrop ML, Koopmans PP, Keuter M, van der Ven AJAM, ter Hofstede HJM, Dofferhoff ASM, van Crevel R, Albers M, Bosch MEW, Grintjes-Huisman KJT, Zomer BJ, Stelma FF, Burger D, Richter C, van der Berg JP, Gisolf EH, ter Beest G, van Bentum PHM, Langebeek N, Tiemessen R, Swanink CMA, Winkel C, Durand A, Muskiet F, Voigt R, van der Meer I, Veenstra J, Lettinga KD, Spelbrink M, Sulman H, Witte E, Peerbooms PGH, Mulder JW, Vrouenraets SME, Lauw FN, van Broekhuizen MC, Paap H, Vlasblom DJ, Sanders EO, Smits PHM, Rosingh AW, Verhagen DWM, Geilings J, van Kasteren MEE, Brouwer AE, de Kruijf-van de Wiel BAFM, Kuipers M, Santegoets RMWJ, van der Ven B, Marcelis JH, Buiting AGM, Kabel PJ, Bierman WFW, Sprenger HG, Scholvinck EH, van Assen S, Wilting KR, Stienstra Y, de Groot-de Jonge H, van der Meulen PA, de Weerd DA, Niesters HGM, Riezebos-Brilman A, Hoepelman AIM, Schneider MME, Mudrikova T, Ellerbroek PM, Oosterheert JJ, Arends JE, Barth RE, Wassenberg MWM, van Elst-Laurijssen DHM, Laan LM, van Oers-Hazelzet EEB, Patist J, Vervoort S, Nieuwenhuis HE, Frauenfelder R, Schuurman R, Verduyn-Lunel F, Wensing AMJ, Peters EJG, van Agtmael MA, Perenboom RM, Bomers M, de Vocht J, Elsenburg LJM, Pettersson AM, Vandenbroucke-Grauls CMJE, Ang CW, Geelen SPM, Wolfs TFW, Bont LJ, Nauta N, Bezemer DO, Gras LAJ, van Sighem AI, Smit C, Zaheri S, Hillebregt M, Kimmel V, Tong Y, Lascaris B, van den Boogaard R, Hoekstra P, de Lang A, Berkhout M, Grivell S, Jansen A, de Groot L, van den Akker M, Bergsma D, Lodewijk C, Meijering R, Peeck B, Raethke M, Ree C, Regtop R, Ruijs Y, Schoorl M, Tuijn E, Veenenberg L, Woudstra T, Bakker Y, de Jong A, Broekhoven M, Claessen E, Tuk B]] , Diminished impact of ethnicity as a risk factor for chronic kidney disease in the current HIV treatment era. J INFECT DIS 2015;212 (2):264-274 [PubMed]
Turrini F, Marelli S, Kajaste-Rudnitski A, Lusic M, van Lint C, Das AT, Harwig A, Berkhout B, Vicenzi E, HIV-1 transcriptional silencing caused by TRIM22 inhibition of Sp1 binding to the viral promoter. RETROVIROLOGY 2015;12 (1):104 [PubMed]
van Bel N. Structure and sequence motifs in the HIV-1 RNA genome. S.l.: s.n.; 2015. 177p. ISBN 978-94-6182-536-0 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): Das AT)
van Bel N, Ghabri A, Das AT, Berkhout B, The HIV-1 leader RNA is exquisitely sensitive to structural changes. VIROLOGY 2015;483:236-252 [PubMed]
van der Sluis RM, van Capel TMM, Speijer D, Sanders RW, Berkhout B, de Jong EC, Jeeninga RE, van Montfort T, Dendritic cell type-specific HIV-1 activation in effector T cells: implications for latent HIV-1 reservoir establishment. AIDS 2015;29 (9):1003-1014 [PubMed]
van Hemert FJ, Zaaijer HL, Berkhout B, In silico prediction of ebolavirus RNA polymerase inhibition by specific combinations of approved nucleotide analogues. J CLIN VIROL 2015;73:89-94 [PubMed]
van Montfort T, Thomas AAM, Krawczyk PM, Berkhout B, Sanders RW, Paxton WA, Reactivation of Neutralized HIV-1 by Dendritic Cells Is Dependent on the Epitope Bound by the Antibody. J IMMUNOL 2015;195 (8):3759-3768 [PubMed]
Berkhout B, Bodem J, Erlwein O, Herchenröder O, Khan AS, Lever AM, Lindemann D, Linial ML, Löchelt M, McClure MO, Scheller C, Weiss RA, Obituary: Axel Rethwilm (1959-2014). RETROVIROLOGY 2014;11 (1):85 [PubMed]
Berkhout B, Liu YP, Towards improved shRNA and miRNA reagents as inhibitors of HIV-1 replication. FUTURE MICROBIOL 2014;9 (4):561-571 [PubMed]
Berkhout B, Mouland AJ, Musier-Forsyth K, SPECIAL ISSUE: Retroviral Nucleocapsid Protein and Assembly Foreword. VIRUS RES 2014;193:1 [PubMed]
de Vree PJP, de Wit E, Yilmaz M, van de Heijning M, Klous P, Verstegen MJAM, Wan Y, Teunissen H, Krijger PHL, Geeven G, Eijk PP, Sie D, Ylstra B, Hulsman LOM, van Dooren MF, van Zutven LJCM, van den Ouweland A, Verbeek S, van Dijk KW, Cornelissen M, Das AT, Berkhout B, Sikkema-Raddatz B, van den Berg E, van der Vlies P, Weening D, den Dunnen JT, Matusiak M, Lamkanfi M, Ligtenberg MJL, ter Brugge P, Jonkers J, Foekens JA, Martens JW, van der Luijt R, van Amstel HKP, van Min M, Splinter E, de Laat W, Targeted sequencing by proximity ligation for comprehensive variant detection and local haplotyping. NAT BIOTECHNOL 2014;32 (10):1019-1025 [PubMed]
Harwig A, Das AT, Berkhout B, Retroviral microRNAs. CURR OPIN VIROL 2014;7:47-54 [PubMed]
Herrera-Carrillo E, Harwig A, Liu YP, Berkhout B, Probing the shRNA characteristics that hinder Dicer recognition and consequently allow Ago-mediated processing and AgoshRNA activity. RNA 2014;20 (9):1410-1418 [PubMed]
Herrera-Carrillo E, Liu YP, Berkhout B, The impact of unprotected T cells in RNAi-based gene therapy for HIV-AIDS. MOL THER 2014;22 (3):596-606 [PubMed]
Herrera-Carrillo E, Paxton WA, Berkhout B, The search for a T cell line for testing novel antiviral strategies against HIV-1 isolates of diverse receptor tropism and subtype origin. J VIROL METHODS 2014;203:88-96 [PubMed]
Isik G. HIV-1 envelope glycoproteins with costimulatory domains for vaccine applications. S.l.: s.n.; 2014. 229p. ISBN 9789053358986 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): Sanders RW)
Jazaeri Farsani SM. Respiratory viruses and novel methods for virus discovery. S.l.: s.n.; 2014. 133p. ISBN 9789461824943 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): van der Hoek CM)
Kiselinova M, Pasternak AO, de Spiegelaere W, Vogelaers D, Berkhout B, Vandekerckhove L, Comparison of droplet digital PCR and seminested real-time PCR for quantification of cell-associated HIV-1 RNA. PLOS ONE 2014;9 (1):e85999 [PubMed]
Liu YP, Berkhout B. Gene Silencing Methods Using Vector-Encoded siRNAs or miRNAs in: Hartmann RK, Bindereif A, Schön A, Westhof E, editors. Handbook of RNA Biochemistry (2nd rev. and enl. ed.). S.l.: Wiley-VCH; 2014., p. 1221-1242
Liu YP, Berkhout B, HIV-1-based lentiviral vectors. METHODS MOL BIOL 2014;1087:273-284 [PubMed]
Mueller N, van Bel N, Berkhout B, Das AT, HIV-1 splicing at the major splice donor site is restricted by RNA structure. VIROLOGY 2014;468-470:609-620 [PubMed]
van Bel N, Das AT, Berkhout B, In Vivo SELEX of Single-Stranded Domains in the HIV-1 Leader RNA. J VIROL 2014;88 (4):1870-1880 [PubMed]
van Bel N, Das AT, Cornelissen M, Abbink TEM, Berkhout B, A short sequence motif in the 5' leader of the HIV-1 genome modulates extended RNA dimer formation and virus replication. J BIOL CHEM 2014;289 (51):35061-35074 [PubMed]
van Bel N, van der Velden Y, Bonnard D, Le Rouzic E, Das AT, Benarous R, Berkhout B, The allosteric HIV-1 integrase inhibitor BI-D affects virion maturation but does not influence packaging of a functional RNA genome. PLOS ONE 2014;9 (7):e103552 [PubMed]
van der Sluis RM, Derking R, Breidel S, Speijer D, Berkhout B, Jeeninga RE, Interplay between viral Tat protein and c-Jun transcription factor in controlling LTR promoter activity in different human immunodeficiency virus type I subtypes. J GEN VIROL 2014;95 (4):968-979 [PubMed]
van Hemert FJ, Berkhout B, Zaaijer HL, Differential binding of tenofovir and adefovir to reverse transcriptase of hepatitis B virus. PLOS ONE 2014;9 (9):e106324 [PubMed]
van Hemert F, van der Kuyl AC, Berkhout B, On the nucleotide composition and structure of retroviral RNA genomes. VIRUS RES 2014;193:16-23 [PubMed]
Baan E. HIV-1 Genotypes and phenotypes associated with mother to child transmission. s.l.: s.n.; 2013. 140p. ISBN 9789461918871 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): Paxton WA, Pollakis G)
Baan E, van der Sluis RM, Bakker ME, Bekker V, Pajkrt D, Jurriaans S, Kuijpers TW, Berkhout B, Wolthers KC, Paxton WA, Pollakis G, Human immunodeficiency virus type 1 gp120 envelope characteristics associated with disease progression differ in family members infected with genetically similar viruses. J GEN VIROL 2013;94 (1):20-29 [PubMed]
Beemon K, Berkhout B, In memoriam Kuan-Teh Jeang (1958-2013): retrovirologist par excellence and founding editor of Retrovirology. J VIROL 2013;87 (12):6539-6540 [PubMed]
Berkhout B, HIV, leukemia, and new horizons in molecular therapy. J FORMOS MED ASSOC 2013;112 (8):441-444 [PubMed]
Berkhout B, Kuan-Teh Jeang Obituary. CELL HOST MICROBE 2013;13 (3):263-264
Berkhout B, Benkirane M, Lever A, Wainberg M, Fassati A, Borrow P, Fujii M, Sriskantharajah S, Cockerill M, Obituary: Kuan-Teh Jeang. RETROVIROLOGY 2013;10 (1):28 [PubMed]
Berkhout B, Coombs KM, Quantitative omics and its application to study virus-host interactions-a new frontier. FRONT MICROBIOL 2013;4:31 [PubMed]
Berkhout B, Eekels JJM. RNAi as antiviral therapy: the HIV-1 case in: Howard KA, editor. RNA Interference from Biology to Therapeutics. New York: Springer; 2013., p. 221-242
Berkhout B, Jeang KT, Retrovirus replication strategies. CURR OPIN VIROL 2013;3 (6):601-603 [PubMed]
Berkhout B, Lever A, Wainberg M, Fassati A, Borrow P, Fujii M, Monsef Benkirane awarded 2013 Ming K. Jeang Foundation Retrovirology Prize: landmark HIV-1 research honoured. RETROVIROLOGY 2013;10 (1):38 [PubMed]
Bontjer I, Melchers M, Tong T, van Montfort T, Eggink D, Montefiori D, Olson WC, Moore JP, Binley JM, Berkhout B, Sanders RW, Comparative Immunogenicity of Evolved V1V2-Deleted HIV-1 Envelope Glycoprotein Trimers. PLOS ONE 2013;8 (6):e67484 [PubMed]
Boutimah F, Eekels JJM, Liu YP, Berkhout B, Antiviral strategies combining antiretroviral drugs with RNAi-mediated attack on HIV-1 and cellular co-factors. ANTIVIR RES 2013;98 (1):121-129 [PubMed]
Centlivre M, Legrand N, Klamer S, Liu YP, Eije KJv, Bohne M, Rijnstra ESv, Weijer K, Blom B, Voermans C, Spits H, Berkhout B, Preclinical In Vivo Evaluation of the Safety of a Multi-shRNA-based Gene Therapy Against HIV-1. MOL THER-NUCL ACIDS 2013;2:e120 [PubMed]
Cento V, van Hemert F, Neumann-Fraune M, Mirabelli C, Di Maio VC, Salpini R, Bertoli A, Micheli V, Gubertini G, Romano S, Visca M, de Sanctis GM, Berkhout B, Marino N, Mazzotta F, Cappiello G, Spanò A, Sarrecchia C, Ceccherini-Silberstein F, Andreoni M, Angelico M, Verheyen J, Perno CF, Svicher V, Anti-HBV treatment induces novel reverse transcriptase mutations with reflective effect on HBV S antigen. J INFECTION 2013;67 (4):303-312 [PubMed]
de Vries M. Virus discovery and human parechoviruses. s.l.: s.n.; 2013. 137p. [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): van der Hoek CM)
Duverger A, Wolschendorf F, Zhang M, Wagner F, Hatcher B, Jones J, Cron RQ, van der Sluis RM, Jeeninga RE, Berkhout B, Kutsch O, An AP-1 binding site in the enhancer/core element of the HIV-1 promoter controls the ability of HIV-1 to establish latent infection. J VIROL 2013;87 (4):2264-2277 [PubMed]
Gras L, Geskus RB, Jurriaans S, Bakker M, van Sighem A, Bezemer D, Fraser C, Prins JM, Berkhout B, de Wolf F [Contributors: Prins JM, Kuijpers TW, Scherpbier HJ, Boer K, van der Meer JTM, Wit FWMN, Godfried MH, Reiss P, van der Poll T, Nellen FJB, Lange JMA, Geerlings SE, van Vugt M, Vrouenraets SME, Pajkrt D, Bos JC, van der Valk M, Schreij G, Lowe S, Oude Lashof A, Pronk MJH, Bravenboer B, van der Ende ME, de Vries-Sluijs TEMS, Schurink CAM, van der Feltz M, Nouwen JL, Gelinck LBS, Verbon A, Rijnders BJA, van de Ven-de Ruiter ED, Slobbe L, Kauffmann RH, Schippers EF, Groeneveld PHP, Alleman MA, Bouwhuis JW, ten Kate RW, Soetekouw R, Kroon FP, van den Broek PJ, van Dissel JT, Arend SM, van Nieuwkoop C, de Boer MGJ, Jolink H, den Hollander JG, Pogany K, Bronsveld W, Kortmann W, van Twillert G, van Houte DPF, Polé MB, van Vonderen MGA, ten Napel CHH, Kootstra GJ, Brinkman K, Blok WL, Frissen PHJ, Schouten WEM, van den Berk GEL, Juttmann JR, van Kasteren MEE, Brouwer AE, Mulder JW, van Gorp ECM, Smit PM, Weijer S, van Eeden A, Verhagen DWM, Sprenger HG, Doedens R, Scholvinck EH, van Assen S, Stek CJ, Hoepelman IM, Mudrikova T, Schneider MME, Jaspers CAJJ, Ellerbroek PM, Peters EJG, Maarschalk-Ellerbroek LJ, Oosterheert JJ, Arends JE, Wassenberg MWM, van der Hilst JCH, Richter C, van der Berg JP, Gisolf EH]] , Has the rate of CD4 cell count decline before initiation of antiretroviral therapy changed over the course of the Dutch HIV epidemic among MSM?. PLOS ONE 2013;8 (5):e64437 [PubMed]
Knoepfel SA, Berkhout B, On the role of four small hairpins in the HIV-1 RNA genome. RNA BIOL 2013;10 (4):540-552 [PubMed]
Liu YP, Berkhout B, Design of lentivirally expressed siRNAs. METHODS MOL BIOL 2013;942:233-257 [PubMed]
Liu YP, Schopman NCT, Berkhout B, Dicer-independent processing of short hairpin RNAs. NUCLEIC ACIDS RES 2013;41 (6):3723-3733 [PubMed]
Lukashov VV, Jurriaans S, Bakker M, Berkhout B, Transmission of risk-group specific HIV-1 strains among Dutch drug users for more than 20 years and their replacement by nonspecific strains after switching to low-harm drug practices. JAIDS-J ACQ IMM DEF 2013;62 (2):234-238 [PubMed]
Manoussaka MS, Berry N, Ferguson D, Stebbings R, Robinson M, Ham C, Page M, Li B, Das AT, Berkhout B, Almond N, Cranage MP, Conditionally-live attenuated SIV upregulates global T effector memory cell frequency under replication permissive conditions. RETROVIROLOGY 2013;10 (1):59 [PubMed]
Oude Munnink BB, Jazaeri Farsani SM, Deijs M, Jonkers J, Verhoeven JTP, Ieven M, Goossens H, de Jong MD, Berkhout B, Loens K, Kellam P, Bakker M, Canuti M, Cotten M, van der Hoek L, Autologous antibody capture to enrich immunogenic viruses for viral discovery. PLOS ONE 2013;8 (11):e78454 [PubMed]
Pasternak AO, Lukashov VV, Berkhout B, Cell-associated HIV RNA: a dynamic biomarker of viral persistence. RETROVIROLOGY 2013;10 (1):41 [PubMed]
van der Kuyl AC, Bakker M, Jurriaans S, Back NKT, Pasternak AO, Cornelissen M, Berkhout B, Translational HIV-1 research: from routine diagnostics to new virology insights in Amsterdam, the Netherlands during 1983-2013. RETROVIROLOGY 2013;10 (1):93 [PubMed]
van der Kuyl AC, Zorgdrager F, Hogema B , Bakker M, Jurriaans S, Back NKT, Berkhout B, Zaaijer HL, Cornelissen M, High prevalence of hepatitis B virus dual infection with genotypes A and G in HIV-1 infected men in Amsterdam, the Netherlands, during 2000-2011. BMC INFECT DIS 2013;13 (1):540 [PubMed]
van der Sluis RM. HIV-1 latency in proliferating T cells. S.l.: s.n.; 2013. 209p. ISBN 9789461917553 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): Jeeninga RE)
van der Sluis RM, Jeeninga RE, Berkhout B, Establishment and molecular mechanisms of HIV-1 latency in T cells. CURR OPIN VIROL 2013;3 (6):700-706 [PubMed]
van der Sluis RM, van Montfort T, Centlivre M, Schopman NCT, Cornelissen M, Sanders RW, Berkhout B, Jeeninga RE, Paxton WA, Pollakis G, Quantitation of HIV-1 DNA with a sensitive TaqMan assay that has broad subtype specificity. J VIROL METHODS 2013;187 (1):94-102 [PubMed]
van der Sluis RM, van Montfort T, Pollakis G, Sanders RW, Speijer D, Berkhout B, Jeeninga RE, Dendritic cell-induced activation of latent HIV-1 provirus in actively proliferating primary T lymphocytes. PLOS PATHOG 2013;9 (3):e1003259-(15 p.) [PubMed]
van der Velden GJ. In vitro and in vivo testing of conditionally replicating SIV and HIV-1 strains to study viral gene expression. s.l.: s.n.; 2013. 160p. ISBN 9789462032699 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): Das AT)
van der Velden GJ, Vink MA, Klaver B, Das AT, Berkhout B, An AUG codon upstream of rev and env open reading frames ensures optimal translation of the simian immunodeficiency virus Env protein. VIROLOGY 2013;436 (1):191-200 [PubMed]
van Hemert FJ, van der Kuyl AC, Berkhout B, The A-nucleotide preference of HIV-1 in the context of its structured RNA genome. RNA BIOL 2013;10 (2):211-215 [PubMed]
Berkhout B, Predicting and preventing viral escape from therapy. FUTURE VIROL 2012;7 (5):483-487
Berkhout B, Das AT, HIV-1 Escape From RNAi Antivirals: Yet Another Houdini Action?. MOL THER-NUCL ACIDS 2012;1 (6):e26 [PubMed]
Berkhout B, Eggink D, Sanders RW, Is there a future for antiviral fusion inhibitors?. CURR OPIN VIROL 2012;2 (1):50-59 [PubMed]
Berkhout B, Sanders RW, Gene therapy as a vaccine for HIV-1. EXPERT OPIN BIOL TH 2012;12 (10):1315-1321 [PubMed]
Das AT, Vrolijk MM, Harwig A, Berkhout B, Opening of the TAR hairpin in the HIV-1 genome causes aberrant RNA dimerization and packaging. RETROVIROLOGY 2012;9 (1):59 [PubMed]
Deeks SG, Autran B, Berkhout B, Benkirane M, Cairns S, Chomont N, Chun TW, Churchill M, Di Mascio M, Katlama C, Lafeuillade A, Landay A, Lederman M, Lewin SR, Maldarelli F, Margolis D, Markowitz M, Martinez-Picado J, Mullins JI, Mellors J, Moreno S, O'Doherty U, Palmer S, Penicaud MC, Peterlin M, Poli G, Routy JP, Rouzioux C, Silvestri G, Stevenson M, Telenti A, van Lint C, Verdin E, Woolfrey A, Zaia J, Barré-Sinoussi F, Towards an HIV cure: a global scientific strategy. NAT REV IMMUNOL 2012;12 (8):607-614 [PubMed]
Eekels JJM, Pasternak AO, Schut AM, Geerts D, Jeeninga RE, Berkhout B, A competitive cell growth assay for the detection of subtle effects of gene transduction on cell proliferation. GENE THER 2012;19 (11):1058-1064 [PubMed]
Eekels JJM, Sagnier S, Geerts D, Jeeninga RE, Biard-Piechaczyk M, Berkhout B, Inhibition of HIV-1 replication with stable RNAi-mediated knockdown of autophagy factors. VIROL J 2012;9 (1):69 [PubMed]
Knoepfel SA, Abad A, Abad X, Fortes P, Berkhout B, Design of modified U1i molecules against HIV-1 RNA. ANTIVIR RES 2012;94 (3):208-216 [PubMed]
Knoepfel SA, Centlivre M, Liu YP, Boutimah F, Berkhout B, Selection of RNAi-based inhibitors for anti-HIV gene therapy. WORLD J VIROL 2012;1 (3):79-90
Kramer G, Moerland PD, Jeeninga RE, Vlietstra WJ, Ringrose JH, Byrman C, Berkhout B, Speijer D, Proteomic analysis of HIV-T cell interaction: an update. FRONT MICROBIOL 2012;3:240-(6 p.) [PubMed]
Legrand N, van der Velden GJ, Fang RHT, Douaisi M, Weijer K, Das AT, Blom B, Uittenbogaart CH, Berkhout B, Centlivre M, A doxycycline-dependent human immunodeficiency virus type 1 replicates in vivo without inducing CD4(+) T-cell depletion. J GEN VIROL 2012;93 (9):2017-2027 [PubMed]
Low JT, Knoepfel SA, Watts JM, ter Brake O, Berkhout B, Weeks KM, SHAPE-directed Discovery of Potent shRNA Inhibitors of HIV-1. MOL THER 2012;20 (4):820-828 [PubMed]
May MT, Hogg RS, Justice AC, Shepherd BE, Costagliola D, Ledergerber B, Thiébaut R, Gill MJ, Kirk O, van Sighem A, Saag MS, Navarro G, Sobrino-Vegas P, Lampe F, Ingle S, Guest JL, Crane HM, D'Arminio Monforte A, Vehreschild JJ, Sterne JAC [Contributors: Gras LA, van Sighem AI, Smit C, de Wolf F, Prins JM, Bos JC, Eeftinck-Schattenkerk JKM, Geerlings SE, Godfried MH, Lange JMA, van der Meer JTM, Nellen FJB, Olszyna DP, van der Poll T, Reiss P, Sankatsing SUC, van der Valk M, Vermeulen JN, Vrouenraets SME, van Vugt M, Wit FWMN, Schreij G, van der Geest S, Oude Lashof A, Lowe S, Verbon A, Bravenboer B, Pronk MJH, Kuijpers TW, Pajkrt D, Scherpbier HJ, van der Ende ME, Bax H, van der Feltz M, Gelinck LBS, de Melo M, Nouwen JL, Rijnders BJA, de Ruiter ED, Slobbe L, Schurink CAM, de Vries TEMS, Driessen G, van der Flier M, Hartwig NG, Branger J, Kauffmann RH, Schippers EF, Groeneveld PHP, Alleman MA, Kroon FP, Arend SM, de Boer MGJ, van den Broek PJ, van Dissel JT, van Nieuwkoop C, den Hollander JG, Bronsveld W, Pogány K, Haag D, Vriesendorp R, Jeurissen FJF, Leyten EMS, van Houte D, Polée MB, van Vonderen M, ten Napel CHH, Kootstra GJ, Brinkman K, van den Berk GEL, Blok WL, Frissen PHJ, Schouten WEM, van Eeden A, Verhagen DWM, Mulder JW, van Gorp ECM, Steingrover ATA, Wagenaar J, Juttmann JR, van Kasteren MEE, Veenstra J, Vasmel WLE, Lettinga KD, Koopmans PP, Brouwer AM, Dofferhoff ASM, de Groot R, ter Hofstede HJM, Keuter M, van der Ven AJAM, Sprenger HG, van Assen S, Stek CJ, Doedens R, Scholvinck EH, Hoepelman IM, Schneider MME, Bonten MJM, Ellerbroek PM, Jaspers CAJJ, Maarschalk-Ellerbroek LJ, Oosterheert JJ, Peters EJG, Mudrikova T, Wassenberg MWM, Weijer S, Hoogenwerf MH, Arends JE, Hoornenborg E, Geelen SPM, Wolfs TFW, Danner SA, van Agtmael MA, Bierman WFW, Claessen FAP, Hillebrand ME, de Jong EV, Kortmann W, Perenboom RM, de Vaate EA, Richter C, van der Berg J, Gisolf EH, Tanis AA, Duits AJ, Winkel K, Back NKT, Bakker MEG, Zaaijer HL, Berkhout B, Jurriaans S, Cuijpers T, Rietra PJGM, Roozendaal KJ, Pauw W, Smits PHM, van Zanten AP, von Blomberg BME, Pettersson A, Savelkoul P, Swanink CMA, Franck PFH, Lampe AS, Jansen CL, Hendriks R, Benne CA, Schirm J, Veenendaal D, Storm H, Weel J, van Zeijl JH, Claas HCJ, Kroes ACM, Bruggeman CAMVA, Goossens VJ, Galama JMD, Melchers WJG, van Doornum GJJ, Niesters HGM, Osterhaus ADME, Schutten M, Buiting AGM, Boucher CAB, Boel E, Schuurman R, Jansz AF, Wulf M, Veldkamp A, Beijnen JH, Huitema ADR, Burger DM, van Kan HJM, Bruyand M, Chêne G, Dabis F, Lawson-Ayayi S, Thiébaut R, Bonarek M, Bonnal F, Bonnet F, Bernard N, Caubet O, Caunègre L, Cazanave C, Ceccaldi J, Dauchy FA, de La Taille C, de Witte S, Dupon M, Duffau P, Dutronc H, Farbos S, Greib C, Lacoste D, Lafarie S, Loste P, Malvy D, Mercié P, Morlat P, Neau D, Ochoa A, Pellegrin JL, Ragnaud JM, Tchamgoué S, Viallard JF, Blanco P, Moreau JF, Fleury H, Lafon ME, Masquelier B, Pellegrin I, Breilh D, Miremont-Salamé G, Blaizeau MJ, Decoin M, Delveaux S, Hannapier C, Labarrère S, Lavignolle-Aurillac V, Uwamaliya-Nziyumvira B, Geffard S, Palmer G, Touchard D, Longy-Boursier M, Fätkenheuer G, Rockstroh J, Hertenstein C, Vehreschild J, Wasmuth JC, Berenguer J, del Amo J, García F, Gutiérrez F, Labarga P, Moreno S, Muñoz MÁ, Sobrino P, Hernando V, Alejos B, Álvarez D, Monge S, Jarrín I, Martínez IGP, Sirvent JLG, Fortúnez PR, Valls MRA, del Mar Alonso Socas M, Lirola AML, Hernández MIH, Díaz-Flores F, Soriano V, Barreiro P, Castañares C, Rivas P, Ruiz A, Blanco F, García P, Rubio R, Pulido F, Fiorante S, Llenas J, Rodríguez V, Matarranz M, Iribarren JA, Arrizabalaga J, Aramburu MJ, Camino X, Rodríguez-Arrondo F, von Wichmann MÁ, Tomé LP, Goenaga MÁ, Bustinduy J, Masiá M, Ramos JM, Padilla S, Navarro A, Montolio F, Peral Y, Bernaldo JCL, Miralles P, Ochaíta JC, Conde MS, Cuellar IG, Schacke MR, Ortega BP, Vidaurreta PG, Marañón G, Vidal F, Peraire J, Viladés C, Veloso S, Vargas M, López-Dupla M, Olona M, Aguilar A, Sirvent JJ, Soriano A, Rodríguez J, Aparicio AS, Sarriá C, Oteo JA, Blanco JR, Ibarra V, Metola L, Sanz M, Boneta JS, Uriz J, Castiello J, Reparaz J, Arraiza MJ, Irigoyen C, Mozas D, Casado JL, Dronda F, Moreno A, Elías MJP, López D, Gutiérrez C, Hernández B, Pumares M, García FG, Quero JH, Monje AP, Medina LM, Losso M, Kundro M, Mejia J, Vetter N, Zangerle R, Karpov I, Vassilenko A, Mitsura VM, Suetnov O, Clumeck N, Delforge M, Colebunders R, Vandekerckhove L, Hadziosmanovic V, Kostov K, Begovac J, Machala L, Jilich D, Sedlacek D, Nielsen J, Kronborg G, Benfield T, Larsen M, Gerstoft J, Katzenstein T, Hansen ABE, Skinhøj P, Pedersen C, Ostergaard L, Zilmer K, Ristola M, Katlama C, Viard JP, Girard PM, Livrozet JM, Vanhems P, Pradier C, Rockstroh J, Schmidt R, van Lunzen J, Degen O, Stellbrink HJ, Staszewski S, Goethe JW, Bogner J, Fätkenheuer G, Kosmidis J, Gargalianos P, Xylomenos G, Perdios J, Panos G, Filandras A, Karabatsaki E, Sambatakou H, Banhegyi D, Mulcahy F, Yust I, Turner D, Burke M, Pollack S, Hassoun G, Maayan S, Vella S, Esposito R, Mazeu I, Mussini C, Arici C, Pristera R, Mazzotta F, Gabbuti A, Vullo V, Lichtner M, Chirianni A, Montesarchio E, Gargiulo M, Antonucci G, Testa A, Offizi GD, Vlassi C, Zaccarelli M, Antorini A, Lazzarin A, Castagna A, Gianotti N, Galli M, Ridolfo A, Sacco L, d'Arminio Monforte A, Rozentale B, Zeltina I, Chaplinskas S, Staub T, Hemmer R, Ormaasen V, Maeland A, Bruun J, Knysz B, Gasiorowski J, Horban A, Bakowska E, Grzeszczuk A, Flisiak R, Boron-Kaczmarska A, Pynka M, Parczewski M, Beniowski M, Mularska E, Trocha H, Jablonowska E, Malolepsza E, Wojcik K, Antunes F, Doroana M, Caldeira L, Mansinho K, Maltez F, Duiculescu D, Babes V, Rakhmanova A, Zakharova N, Buzunova S, Jevtovic D, Mokráš M, Staneková D, Tomazic J, González-Lahoz J, Soriano V, Labarga P, Medrano J, Moreno S, Rodriguez JM, Clotet B, Jou A, Paredes R, Tural C, Puig J, Bravo I, Gatell JM, Miró JM, Domingo P, Gutierrez M, Mateo G, Sambeat MA, Blaxhult A, Flamholc L, Ledergerber B, Weber R, Francioli P, Cavassini M, Hirschel B, Boffi E, Furrer H, Battegay M, Elzi L, Kravchenko E, Chentsova N, Frolov V, Kutsyna G, Servitskiy S, Krasnov M, Barton S, Johnson AM, Mercey D, Phillips A, Johnson MA, Mocroft A, Murphy M, Weber J, Scullard G, Fisher M, Leen C, Gatell J, Gazzard B, d'Arminio A, de Wit S, Lundgren J, Kirk O, Cozzi-Lepri A, Grint D, Sabin M, Podlekareva D, Kjær J, Peters L, Tverland J, Fischer AH, Grarup J, Thiebaut R, Burger D, Abgrall S, Barin F, Bentata M, Billaud E, Boué F, Burty C, Cabié A, Costagliola D, Cotte L, de Truchis P, Duval X, Duvivier C, Enel P, Fredouille-Heripret L, Gasnault J, Gaud C, Gilquin J, Grabar S, Khuong MA, Lang JM, Lascaux AS, Launay O, Mahamat A, Mary-Krause M, Matheron S, Meynard JL, Pavie J, Pialoux G, Pilorgé F, Poizot-Martin I, Reynes J, Rouveix E, Simon A, Tattevin P, Tissot-Dupont H, Viard JP, Viget N, Jacquemet N, Guiguet M, Lanoy E, Lièvre L, Selinger-Leneman H, Lacombe JM, Potard V, Pitié GH, Bricaire F, Herson S, Desplanque N, Girard PM, Meyohas MC, Picard O, Cadranel J, Mayaud C, Clauvel JP, Decazes JM, Gerard L, Molina JM, Lariboisière-Fernand GH, Diemer M, Sellier P, Honoré P, Jeantils V, Tassi S, Mechali D, Taverne B, Bouvet E, Crickx B, Ecobichon JL, Picard-Dahan C, Yeni P, Berthé H, Dupont C, Chandemerle C, Mortier E, Tisne-Dessus D, Weiss L, Tarnier-Cochin GH, Salmon D, Auperin I, Roudière L, Fior R, Delfraissy JF, Goujard C, Jung C, Vittecoq D, Fraisse P, Rey D, Beck-Wirth G, Stahl JP, Lecercq P, Gourdon F, Laurichesse H, Fresard A, Lucht F, Bazin C, Verdon R, Chavanet P, Arvieux C, Michelet C, Choutet P, Goudeau A, Maître MF, Hoen B, Eglinger P, Faller JP, Borsa-Lebas F, Caron F, Daures JP, May T, Rabaud C, Berger JL, Rémy G, Arlet-Suau E, Cuzin L, Massip P, Legrand M, Pontonnier G, Yasdanpanah Y, Dellamonica P, Pugliese P, Aleksandrowicz K, Quinsat D, Ravaux I, Delmont JP, Moreau J, Gastaut JA, Retornaz F, Soubeyrand J, Galinier A, Ruiz JM, Allegre T, Blanc PA, Bonnet-Montchardon D, Lepeu G, Granet-Brunello P, Esterni JP, Pelissier L, Cohen-Valensi R, Nezri M, Chadapaud S, Laffeuillade A, Raffi F, Boibieux A, Peyramond D, Touraine JL, Trepo C, Strobel M, Saint-Martin CH, Bissuel F, Pradinaud R, Sobesky M, Contant M, Moroni M, Angarano G, Antinori A, Castelli F, Cauda R, Di Perri G, Iardino R, Ippolito G, Perno CF, Armignacco O, Viale PL, Von Schlosser F, Ammassari A, Andreoni M, Balotta C, Bonfanti P, Bonora S, Borderi M, Capobianchi MR, Ceccherini-Silberstein F, Cinque P, de Luca A, Gervasoni C, Girardi E, Gori A, Guaraldi G, Caputo SL, Madeddu G, Maggiolo F, Marchetti G, Marcotullio S, Monno L, Murri R, Puoti M, Torti C, Cicconi P, Fanti I, Formenti T, Galli L, Lorenzini P, Giacometti A, Costantini A, Riva A, Carrisa C, Lazzari G, Verucchi G, Minardi C, Quirino T, Abeli C, Manconi PE, Piano P, Vecchiet J, Falasca K, Sighinolfi L, Segala D, Cassola G, Viscoli G, Alessandrini A, Piscopo R, Mazzarello G, Mastroianni C, Belvisi V, Caramma I, Chiodera A, Castelli P, Rizzardini G, Ridolfo AL, Piolini R, Salpietro S, Galli A, Bigoloni A, Spagnuolo V, Carenzi L, Zucchi P, Moioli MC, Rossotti R, Bisio L, Lapadula G, Abrescia N, Guida MG, Baldelli F, Belfiori B, Parruti G, Ursini T, Magnani G, Ursitti MA, Tozzi V, d'Avino A, Gallo L, Nicastro E, Acinapura R, Capozzi M, Libertone R, Tebano G, Mura MS, Caramello P, Orofino GC, Sciandra M, Pellizzer G, Manfrin V, Casabona J, Esteve A, Alquézar A, Podzamczer D, Murillas J, Romero A, Agustí C, Agüero F, Ferrer E, Riera M, Navarro F, Force L, Vilaró J, Masabeu A, García I, Guadarrama M, Montoliu A, Ortega N, Lazzari E, Puchol E, Sanchez M, Blanco JL, Garcia-Alcaide F, Martinez E, López-Dieguez J, García-Goez JF, Sirera G, Romeu J, Negredo E, Miranda C, Capitan MC, Olmo M, Barragan P, Saumoy M, Bolao F, Cabellos C, Peña C, Sala M, Cervantes M, Jose Amengual M, Navarro M, Penelo E, Barrufet P, Bhagani S, Carroll A, Cropley I, Cuthbertson Z, Drinkwater T, Dunleavy A, Fernandez T, Geretti AM, Marshall N, Murphy G, Nair D, Ivens D, Johnson M, Kinloch-de Loes S, Lipman M, Madge S, Mahungu T, Prinz B, Swaden L, Rodger A, Tyrer M, Youle M, Chaloner C, Holloway J, Puradiredja J, Scott S, Tsintas R, Cambiano V, Harris E, Lampe F, Lodwick R, Smith C, Amoah E, Booth C, Clewley G, Garcia Diaz A, Gregory B, Labbett W, Libaste J, Tahami F, Thomas M, Zhong Y, Aubert V, Barth J, Bernasconi E, Böni J, Bucher HC, Burton-Jeangros C, Calmy A, Egger M, Fehr J, Fellay J, Fux CA, Gorgievski M, Günthard H, Haerry D, Hasse B, Hirsch HH, Hösli I, Kahlert C, Kaiser L, Keiser O, Kind C, Klimkait T, Kovari H, Martinetti G, Martinez de Tejada B, Metzner K, Müller N, Nadal D, Pantaleo G, Rauch A, Regenass S, Rickenbach M, Rudin C, Schmid P, Schultze D, Affolter F, Schüpbach J, Speck R, Taffé P, Tarr P, Telenti A, Trkola A, Vernazza P, Yerly S, Gill J, Read R, Beckthold B, Akagi L, Brandson E, Druyts E, Fernandes K, Gataric N, Harrigan PR, Harris M, Hogg R, Lima V, Montaner J, Moore D, Palmer A, Wood E, Yip B, Zhang W, Guest JL, Rimland D, Moanna A, Hidron A, DeSilva KE, Moorfield M, Dorsey M, Mindley R, Wirtz SS, Brown P, Dozier R, Robinson Y, Saag MS, Mugavero MJ, Willig JH, Raper JL, Allison JJ, Kempf MC, Schumacher JE, Westfall AO, Lin HY, Pisu M, Moneyham L, Vance D, Bachmann L, Davies SL, Berner E, Acosta E, King J, Kaslow RA, Savage K, Nevin C, Walton FB, Marler ML, Lawrence S, Files-Kennedy B, Batey DS, Patil MA, Patil U, Varshney M, Gibson E, Guzman A, Rinehart D, Brandt C, Crothers K, Dubrow R, Fiellin D, Freiberg M, Gandhi N, Goulet J, Justice A, Lim J, LoRe V, McGinnis K, Ohl M, Parikh C, Skanderson M, Tate J, Womack J, Brown S, Butt A, Gibert C, Goetz M, Oursler KA, Rodriguez-Barradas M, Simberkoff M, Sterling TR, Shepherd B, Hulgan T, McGowan C, Wester W, Melekhin V, Koethe J, Qian HZ, Kipp A, Raffanti S, Haas D, D'Aquila R, Stinnette S, Bebawy S, Turner M, Rasbach D, Tillman A, Heaton H, Jenkins C, Kitahata M, Crane H, van Rompaey S, Harrington R, Lober B, Collier A, Simoni J, Tarczy-Hornoch P, Scott J, McCormick W, Mallolas M, Segura G, Thiercelin F, Ramos M, Mairuhu R]] , Heterogeneity in outcomes of treated HIV-positive patients in Europe and North America: relation with patient and cohort characteristics. INT J EPIDEMIOL 2012;41 (6):1807-1820 [PubMed]
Melchers M, Bontjer I, Tong T, Chung NPY, Klasse PJ, Eggink D, Montefiori DC, Gentile M, Cerutti A, Olson WC, Berkhout B, Binley JM, Moore JP, Sanders RW, Targeting HIV-1 Envelope Glycoprotein Trimers to B Cells by Using APRIL Improves Antibody Responses. J VIROL 2012;86 (5):2488-2500 [PubMed]
Mirambeau G, Darlix JL, Summers M, Berkhout B, Foreword to the virus research special issue on "retroviral RNA, protein co-factors and chaperones". VIRUS RES 2012;169 (2):322-323 [PubMed]
Pasternak AO, de Bruin M, Jurriaans S, Bakker M, Berkhout B, Prins JM, Lukashov VV, Modest Nonadherence to Antiretroviral Therapy Promotes Residual HIV-1 Replication in the Absence of Virological Rebound in Plasma. J INFECT DIS 2012;206 (9):1443-1452 [PubMed]
Schenk GJ, Haasnoot PCJ, Centlivre M, Legrand N, Rip J, de Boer AG, Berkhout B, Efficient CRM197-mediated drug targeting to monocytes. J CONTROL RELEASE 2012;158 (1):139-147 [PubMed]
Schopman NCT. Interplay between the RNA interference machinery and HIV-1. Amsterdam: Off Page; 2012. 165p. ISBN 978-94-6182-074-7 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): )
Schopman NCT, Braun A, Berkhout B, Directed HIV-1 evolution of protease inhibitor resistance by second-generation short hairpin RNAs. ANTIMICROB AGENTS CH 2012;56 (1):479-486 [PubMed]
Schopman NCT, van Montfort T, Willemsen M, Knoepfel SA, Pollakis G, van Kampen A, Sanders RW, Haasnoot J, Berkhout B, Selective packaging of cellular miRNAs in HIV-1 particles. VIRUS RES 2012;169 (2):438-447 [PubMed]
Schopman NCT, Willemsen M, Liu YP, Bradley T, van Kampen A, Baas F, Berkhout B, Haasnoot J, Deep sequencing of virus-infected cells reveals HIV-encoded small RNAs. NUCLEIC ACIDS RES 2012;40 (1):414-427 [PubMed]
Steenvoorden MMC, Cornelissen M, van Leeuwen E, Schuurman NM, Egberink HF, Berkhout B, van der Veen F, Repping S, Integration of immunodeficiency virus in oocytes via intracytoplasmic injection: possible but extremely unlikely. FERTIL STERIL 2012;98 (1):173-177 [PubMed]
van der Kuyl AC, Berkhout B, The biased nucleotide composition of the HIV genome: a constant factor in a highly variable virus. RETROVIROLOGY 2012;9 (1):92 [PubMed]
van der Velden GJ, Klaver B, Das AT, Berkhout B, Upstream AUG Codons in the Simian Immunodeficiency Virus SIVmac239 Genome Regulate Rev and Env Protein Translation. J VIROL 2012;86 (22):12362-12371 [PubMed]
van der Velden GJ, Vink MA, Berkhout B, Das AT, Tat has a dual role in simian immunodeficiency virus transcription. J GEN VIROL 2012;93 (10):2279-2289 [PubMed]
Wagschal A, Rousset E, Basavarajaiah P, Contreras X, Harwig A, Laurent-Chabalier S, Nakamura M, Chen X, Zhang K, Meziane O, Boyer F, Parrinello H, Berkhout B, Terzian C, Benkirane M, Kiernan R, Microprocessor, Setx, Xrn2, and Rrp6 Co-operate to Induce Premature Termination of Transcription by RNAPII. CELL 2012;150 (6):1147-1157 [PubMed]
Berkhout B, Evolution of Live-Attenuated HIV Vaccines. BIOPHARM INT 2011;24 (1):S4-S8
Berkhout B, HIV-1 as RNA evolution machine. RNA BIOL 2011;8 (2):225-229 [PubMed]
Berkhout B. HIV/AIDS: the possibilities of an RNAi-based gene therapy in: Bandivdekar AH, Puri CP, editors. Fundamental and Translational Research on HIV/AIDS: Global Perspectives. Mumbai: National Institute for Research in Reproductive Health; 2011., p. 1-19
Berkhout B, Arts K, Abbink TEM, Ribosomal scanning on the 5'-untranslated region of the human immunodeficiency virus RNA genome. NUCLEIC ACIDS RES 2011;39 (12):5232-5244 [PubMed]
Berkhout B, Eggink D, New pathogenic viruses and novel antiviral drugs. EXPERT REV ANTI-INFE 2011;9 (2):161-163 [PubMed]
Berkhout B, Jeang KT, MicroRNAs in viral gene regulation. BBA-GENE REGUL MECH 2011;1809 (11-12):587-587 [PubMed]
Berkhout B, Sanders RW, Molecular strategies to design an escape-proof antiviral therapy. ANTIVIR RES 2011;92 (1):7-14 [PubMed]
Centlivre M, Legrand N, Steingrover R, van der Sluis R, Grijsen ML, Bakker M, Jurriaans S, Berkhout B, Paxton WA, Prins JM, Pollakis G, Altered dynamics and differential infection profiles of lymphoid and myeloid cell subsets during acute and chronic HIV-1 infection. J LEUKOCYTE BIOL 2011;89 (5):785-795 [PubMed]
Das AT, Harwig A, Berkhout B, The HIV-1 Tat protein has a versatile role in activating viral transcription. J VIROL 2011;85 (18):9506-9516 [PubMed]
Didierlaurent L, Racine PJ, Houzet L, Chamontin C, Berkhout B, Mougel M, Role of HIV-1 RNA and protein determinants for the selective packaging of spliced and unspliced viral RNA and host U6 and 7SL RNA in virus particles. NUCLEIC ACIDS RES 2011;39 (20):8915-8927 [PubMed]
Dijkman R. Characterization of novel human respiratory viruses. s.l.: s.n.; 2011. 210p. ISBN 9789053354469 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): van der Hoek CM)
Eekels JJM. Silencing of HIV-1 co-factors. s.l.: s.n.; 2011. 156p. ISBN 9789053354674 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): )
Eekels JJM, Berkhout B. Toward a durable treatment of HIV-1 infection using in: Grimm D, editor. Cellular RNA interference mechanisms. London: Academic Press; 2011. 102, p. 141-163
Eekels JJM, Berkhout B, Toward a durable treatment of HIV-1 infection using RNA interference. PROG MOL BIOL TRANSL 2011;102:141-163 [PubMed]
Eekels JJM, Geerts D, Jeeninga RE, Berkhout B, Long-term inhibition of HIV-1 replication with RNA interference against cellular co-factors. ANTIVIR RES 2011;89 (1):43-53 [PubMed]
Eggink D, Bontjer I, Langedijk JPM, Berkhout B, Sanders RW, Resistance of Human Immunodeficiency Virus Type 1 to a Third-Generation Fusion Inhibitor Requires Multiple Mutations in gp41 and Is Accompanied by a Dramatic Loss of gp41 Function. J VIROL 2011;85 (20):10785-10797 [PubMed]
Haasnoot J, Berkhout B, RNAi and Cellular miRNAs in Infections by Mammalian Viruses. METHODS MOL BIOL 2011;721:23-41 [PubMed]
Liu YP, Berkhout B, miRNA cassettes in viral vectors: problems and solutions. BBA-GENE REGUL MECH 2011;1809 (11-12):732-745 [PubMed]
Liu YP, Westerink JT, ter Brake O, Berkhout B, RNAi-Inducing Lentiviral Vectors for Anti-HIV-1 Gene Therapy. METHODS MOL BIOL 2011;721:293-311 [PubMed]
Melchers M, Matthews K, de Vries RP, Eggink D, van Montfort T, Bontjer I, van de Sandt C, David K, Berkhout B, Moore JP, Sanders RW, A stabilized HIV-1 envelope glycoprotein trimer fused to CD40 ligand targets and activates dendritic cells. RETROVIROLOGY 2011;8 (1):48 [PubMed]
Pan Q, de Ruiter PE, Von Eije KJ, Smits R, Kwekkeboom J, Tilanus HW, Berkhout B, Janssen HLA, van der Laan LJW, Disturbance of the microRNA pathway by commonly used lentiviral shRNA libraries limits the application for screening host factors involved in hepatitis C virus infection. FEBS LETT 2011;585 (7):1025-1030 [PubMed]
Schellens IMM, Navis M, van Deutekom HWM, Boeser-Nunnink B, Berkhout B, Kootstra N, Miedema F, Keşmir C, Schuitemaker H, van Baarle D, Borghans JAM, Loss of HIV-1-derived cytotoxic T lymphocyte epitopes restricted by protective HLA-B alleles during the HIV-1 epidemic. AIDS 2011;25 (14):1691-1700 [PubMed]
van der Kuyl AC, Berkhout B, XMRV: not a mousy virus. J FORMOS MED ASSOC 2011;110 (5):273-274 [PubMed]
van der Kuyl AC, Cornelissen M, Berkhout B, Of Mice and Men: On the Origin of XMRV. FRONT MICROBIOL 2011;1:147 [PubMed]
van der Kuyl AC, Jurriaans S, Back NKT, Sprenger HG, van der Werf TS, Zorgdrager F, Berkhout B, Cornelissen M, Unusual Cluster of HIV Type 1 Dual Infections in Groningen, The Netherlands. AIDS RES HUM RETROV 2011;27 (4):429-433 [PubMed]
van der Sluis RM, Pollakis G, van Gerven ML, Berkhout B, Jeeninga RE, Latency profiles of full length HIV-1 molecular clone variants with a subtype specific promoter. RETROVIROLOGY 2011;8 (1):73 [PubMed]
van Hemert FJ, van de Klundert MAA, Lukashov VV, Kootstra NA, Berkhout B, Zaaijer HL, Protein X of hepatitis B virus: origin and structure similarity with the central domain of DNA glycosylase. PLOS ONE 2011;6 (8):e23392 [PubMed]
van Montfort T, Eggink D, Boot M, Tuen M, Hioe CE, Berkhout B, Sanders RW, HIV-1 N-glycan composition governs a balance between dendritic cell-mediated viral transmission and antigen presentation. J IMMUNOL 2011;187 (9):4676-4685 [PubMed]
van Montfort T, Melchers M, Isik G, Menis S, Huang PS, Matthews K, Michael E, Berkhout B, Schief WR, Moore JP, Sanders RW, A chimeric HIV-1 envelope glycoprotein trimer with an embedded granulocyte-macrophage colony-stimulating factor (GM-CSF) domain induces enhanced antibody and T cell responses. J BIOL CHEM 2011;286 (25):22250-22261 [PubMed]
von Eije KJ, Berkhout B. Antiviral RNAi, how to silence viruses in: de Clercq E, editor. Antiviral Drug Strategies. Weinheim: Wiley-VCH Verlag; 2011., p. 329-349
White KA, Enjuanes L, Berkhout B, RNA virus replication, transcription and recombination. RNA BIOL 2011;8 (2):182-183 [PubMed]
Ayele W, Mekonnen Y, Messele T, Mengistu Y, Tsegaye A, Bakker M, Berkhout B, Dorigo-Zetsma W, Wolday D, Goudsmit J, Coutinho R, de Baar M, Paxton WA, Pollakis G, Differences in HIV Type 1 RNA Plasma Load Profile of Closely Related Cocirculating Ethiopian Subtype C Strains: C and C '. AIDS RES HUM RETROV 2010;26 (7):805-813 [PubMed]
Berkhout B, Hepatitis C virus therapy: blocking the little microRNA helper of the virus. J FORMOS MED ASSOC 2010;109 (3):173-176 [PubMed]
Berkhout B, HIV-based lentiviral vectors for anti-HIV gene therapy. FUTURE VIROL 2010;5 (4):367-369
Berkhout B. Hiv-onderzoek na 25 jaar in: Schadé A, Boenink AD, Danner SA, editors. Handboek Hiv en psychische klachten. Utrecht: De Tijdstroom; 2010., p. 45-53
Berkhout B, Natuurlijke resistentie tegen het humaan immunodeficiëntie virus (HIV). FOLIA PHARMACEUTICA 2010;97 (4):22-23
Berkhout B, ter Brake O. RNAi Gene Therapy to Control HIV-1 Infection in: Martínez MA, editor. RNA Interference and Viruses: Current Innovations and Future Trends. Norfolk: Caister Academic Press; 2010., p. 127-142
Bezemer D, van Sighem A, Lukashov VV, van der Hoek L, Back N, Schuurman R, Boucher CAB, Claas ECJ, Boerlijst MC, Coutinho RA, de Wolf F [Contributors: Prins JM, Bos JC, Eeftinck-Schattenkerk JKM, Geerlings SE, Godfried MH, Lange JMA, van der Meer JTM, Nellen FJB, Olszyna DP, van der Poll T, Reiss P, Sankatsing SUC, Steingrover R, van der Valk M, Vermeulen JN, Vrouenraets SME, van Vugt M, Schrei G, van der Geest S, Oude Lashof A, Lowe S, Verbon A, Bravenboer B, Pronk MJH, Kuijpers TW, Pajkrt D, Scherpbier HJ, van der Ende ME, Bax H, van der Feltz M, Gelinck LBS, de Melo M, Nouwen JL, Rijnders BJA, de Ruiter ED, Slobbe L, Schurink CAM, de Vries TEMS, Driessen G, van der Flier M, Hartwig NG, Branger J, Kauffmann RH, Pogany K, Schippers EF, Groeneveld PHP, Alleman MA, ten Kate RW, Soetekouw R, Kroon FP, Arend SM, de Boer MGJ, van den Broek PJ, van Dissel JT, van Nieuwkoop C, den Hollander JG, Bronsveld W, Vriesendorp R, Jeurissen FJF, Leyten EMS, van Houte D, Polee MB, ten Napel CHH, Kootstra GJ, Brinkman K, van den Berk GEL, Blok WL, Frissen PHJ, Schouten WEM, van Eeden A, Verhagen DWM, Mulde JW, van Gorp ECM, Mairuhu ATA, Wagenaar J, Juttmann JR, van Kasteren MEE, Veenstra J, Vasmel WLE, Koopmans PP, Brouwer AM, Dofferhoff ASM, de Groot R, ter Hofstede HJM, Keuter M, van der Ven AJAM, Sprenger HG, van Assen S, van Leeuwen JTM, Stek CJ, Doedens R, Scholvinck EH, Hoepelman IM, Schneider MME, Bonten MJM, Ellerbroek PM, Jaspers CAJJ, Maarschalk-Ellerbroek LJ, Oosterheert JJ, Peters EJG, Mudrikova T, Wassenberg MWM, Weijer S, Geelen SPM, Wolfs TFW, Danner SA, van Agtmael MA, Bierman WFW, Claessen FAP, Hillebrand ME, de Jong EV, Kortmann W, Perenboom RM, bij de Vaate EA, Richter C, van der Berg J, Gisolf EH, Tanis AA, Duits AJ, Winkel K, Back NKT, Bakker MEG, Zaaijer HL, Berkhout B, Jurriaans S, Cuijpers T, Rietra PJGM, Roozendaal KJ, Pauw W, Smits PHM, van Zanten AP, von Blomberg BME, Pettersson A, Savelkoul P, Swanink CMA, Franck PFH, Lampe AS, Jansen CL, Hendriks R, Benne CA, Schirm J, Veenendaal D, Storm H, Weel J, van Zeijl JH, Claas HCJ, Kroes ACM, Bruggeman CAMVA, Goossens VJ, Galama JMD, Melchers WJG, Lunel V, van Doornum GJJ, Niesters HGM, Osterhaus ADME, Schutten M, Buiting AGM, Boucher CAB, Boel E, Schuurman R, Jansz AF, Wulf M, Veldkamp A, Beijnen JH, Huitema ADR, Burger DM, van Kan HJM]] , Transmission networks of HIV-1 among men having sex with men in the Netherlands. AIDS 2010;24 (2):271-282 [PubMed]
Bontjer I, Melchers M, Eggink D, David K, Moore JP, Berkhout B, Sanders RW, Stabilized HIV-1 envelope glycoprotein trimers lacking the V1V2 domain, obtained by virus evolution. J BIOL CHEM 2010;285 (47):36456-36470 [PubMed]
Centlivre M, Zhou X, Pouw SM, Weijer K, Kleibeuker W, Das AT, Blom B, Seppen J, Berkhout B, Legrand N, Autoregulatory lentiviral vectors allow multiple cycles of doxycycline-inducible gene expression in human hematopoietic cells in vivo. GENE THER 2010;17 (1):14-25 [PubMed]
Cornelissen M, Zorgdrager F, Blom P, Jurriaans S, Repping S, van Leeuwen E, Bakker M, Berkhout B, van der Kuyl AC, Lack of Detection of XMRV in Seminal Plasma from HIV-1 Infected Men in The Netherlands. PLOS ONE 2010;5 (8):e12040 [PubMed]
Das AT, Berkhout B, HIV-1 evolution: frustrating therapies, but disclosing molecular mechanisms. PHILOS T R SOC B 2010;365 (1548):1965-1973 [PubMed]
Das AT, Jeeninga RE, Berkhout B, Possible applications for replicating HIV 1 vectors. HIV THER 2010;4 (3):361-369 [PubMed]
Eggink D, Berkhout B, Sanders RW, Inhibition of HIV-1 by Fusion Inhibitors. CURR PHARM DESIGN 2010;16 (33):3716-3728 [PubMed]
Eggink D, Melchers M, Wuhrer M, van Montfort T, dey AK, Naaijkens BA, David KB, Le Douce V, Deelder AM, Kang K, Olson WC, Berkhout B, Hokke CH, Moore JP, Sanders RW, Corrigendum to: Lack of complex N-glycans on HIV-1 envelope glycoproteins preserves protein conformation and entry function (vol 401, pg 236, 2010). VIROLOGY 2010;406 (1):162-163
Eggink D, Melchers M, Wuhrer M, van Montfort T, dey AK, Naaijkens BA, David KB, Le Douce V, Deelder AM, Kang K, Olson WC, Berkhout B, Hokke CH, Moore JP, Sanders RW, Lack of complex N-glycans on HIV-1 envelope glycoproteins preserves protein conformation and entry function. VIROLOGY 2010;401 (2):236-247 [PubMed]
Eggink WD. Resistance to HIV-1 fusion inhibitors. s.l.: s.n.; 2010. 225p. ISBN 9789490371289 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): Sanders RW)
Haasnoot J, Berkhout B. HIV-1 Interactions with Small RNA Induced Silencing Mechanisms in: Lever AML, Jeang KT, Berkhout B, editors. Recent Advances in Human Retroviruses: Principles of Replication and Pathogenesis. Singapore: World Scientific Publishing Co. Pte. Ltd.; 2010., p. 471-489
Haasnoot J, Berkhout B. Virus-encoded Suppressors of RNA Silencing and the Role of Cellular miRNAs in Mammalian Antiviral Immune Responses in: Martínez MA, editor. RNA Interference and Viruses: Current Innovations and Future Trends. Norfolk: Caister Academic Press; 2010., p. 67-88
Heeregrave EJ. Influence of CD4+ cell types on HIV-1 infection. s.l.: s.n.; 2010. 169p. ISBN 9789490371333 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): Paxton WA)
Lever AML, Jeang KT, Berkhout B, editors, Recent Advances in Human Retroviruses: Principles of Replication and Pathogenesis. Singapore: World Scientific Publishing Co. Pte. Ltd.; 2010. 493p. ISBN 978-981-4295-30-7
Liu YP, Vink MA, Westerink JT, Ramirez de Arellano E, Konstantinova P, ter Brake O, Berkhout B, Titers of lentiviral vectors encoding shRNAs and miRNAs are reduced by different mechanisms that require distinct repair strategies. RNA 2010;16 (7):1328-1339 [PubMed]
Melchers M. Improving HIV-1 enveloppe glycoprotein vaccines. s.l.: s.n.; 2010. 205p. ISBN 9789490371517 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): Sanders RW)
Pasternak AO, Jurriaans S, Bakker M, Berkhout B, Lukashov VV, Steady increase in cellular HIV-1 load during the asymptomatic phase of untreated infection despite stable plasma viremia. AIDS 2010;24 (11):1641-1649 [PubMed]
Sanders RW, Berkhout B, Sealing the Envelope - The HIV-1 Envelope Glycoproteins as Targets for Therapeutics and Vaccines. CURR PHARM DESIGN 2010;16 (33):3699-3700 [PubMed]
Schopman NCT, Heynen S, Haasnoot J, Berkhout B, A miRNA-tRNA mix-up tRNA origin of proposed miRNA. RNA BIOL 2010;7 (5):573-576 [PubMed]
Schopman NCT, Liu YP, Konstantinova P, ter Brake O, Berkhout B, Optimization of shRNA inhibitors by variation of the terminal loop sequence. ANTIVIR RES 2010;86 (2):204-211 [PubMed]
Schopman NCT, ter Brake O, Berkhout B, Anticipating and blocking HIV-1 escape by second generation antiviral shRNAs. RETROVIROLOGY 2010;7 (1):52 [PubMed]
Stax MJ. Characterization of DC-sign binding glycoproteins and the role in HIV-1 infection. s.l.: s.n.; 2010. 116p. ISBN 978990371296 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): Paxton WA)
ter Brake O, Westerink JT, Berkhout B, Lentiviral Vector Engineering for Anti-HIV RNAi Gene Therapy. METHODS MOL BIOL 2010;614:201-213 [PubMed]
van der Hoek L, Ihorst G, Sure K, Vabret A, Dijkman R, de Vries M, Forster J, Berkhout B, Uberla K, Burden of disease due to human coronavirus NL63 infections and periodicity of infection. J CLIN VIROL 2010;48 (2):104-108 [PubMed]
van der Kuyl AC, Kozaczynska K, Arien KK, Gali Y, Balazs VR, Dekker SJ, Zorgdrager F, Vanham G, Berkhout B, Cornelissen M, Analysis of infectious virus clones from two HIV-1 superinfection cases suggests that the primary strains have lower fitness. RETROVIROLOGY 2010;7 (1):60 [PubMed]
Von Eije KJ, Berkhout B. RNAi treatment of HIV-1 infection in: Erdmann VA, Barciszewski J, editors. RNA Technologies and Their Applications. Berlin: Springer-Verlag; 2010., p. 191-208
Vrolijk MM. Structure and function of the repeat region in the HIV-1 RNA genome. s.l.: s.n.; 2010. 111p. ISBN 9789090250151 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): Das AT)
Ayele W, Assefa T, Lulseged S, Tegbaru B, Berhanu H, Tamene W, Ahmedin Z, Tensai BW, Tafesse M, Goudsmit J, Berkhout B, Paxton WA, Debaar MP, Messele T, Pollakis G, RNA Detection and Subtype C Assessment of HIV-1 in Infants with Diarrhea in Ethiopia. OPEN AIDS J 2009;3:19-23 [PubMed]
Berkhout B, A new Houdini act: multiple routes for HIV-1 escape from RNAi-mediated inhibition. FUTURE MICROBIOL 2009;4 (2):151-154 [PubMed]
Berkhout B, Toward a Durable Anti-HIV Gene Therapy Based on RNA Interference. ANN NY ACAD SCI 2009;1175:3-14 [PubMed]
Berkhout B, Das AT, Virus Evolution as a Tool to Study HIV-1 Biology. METHODS MOL BIOL 2009;485:436-451 [PubMed]
Berkhout B, Paxton WA, HIV vaccine: it may take two to tango, but no party time yet. RETROVIROLOGY 2009;6 (1):88 [PubMed]
Berkhout B, ter Brake O, Towards a durable RNAi gene therapy for HIV-AIDS. EXPERT OPIN BIOL TH 2009;9 (2):161-170 [PubMed]
Berkhout B, ter Brake O, Towards an RNAi-based Gene Therapy. BIOFORUM EUROPE 2009;9:7-9
Bontjer I, Land A, Eggink D, Verkade E, Tuin K, Baldwin C, Pollakis G, Paxton WA, Braakman I, Berkhout B, Sanders RW, Optimization of human immunodeficiency virus type 1 envelope glycoproteins with V1/V2 deleted, using virus evolution. J VIROL 2009;83 (1):368-383 [PubMed]
Borderia AV, Berkhout B, Towards a genetic AIDS vaccine. RETROVIROLOGY 2009;6 (1):93 [PubMed]
de Vries WG. Viral suppressors of RNA interference. s.l.: s.n.; 2009. 160p. ISBN 9789085702726 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): )
de Vries W, Haasnoot J, Fouchier R, de Haan P, Berkhout B, Differential RNA silencing suppression activity of NS1 proteins from different influenza A virus strains. J GEN VIROL 2009;90 (Part 8):1916-1922 [PubMed]
Eggink D, Langedijk JPM, Bonvin AMJJ, Deng Y, Lu M, Berkhout B, Sanders RW, Detailed mechanistic insights into HIV-1 sensitivity to three generations of fusion inhibitors. J BIOL CHEM 2009;284 (39):26941-26950 [PubMed]
Gras L, Jurriaans S, Bakker M, van Sighem A, Bezemer D, Fraser C, Lange J, Prins JM, Berkhout B, de Wolf F [Contributors: Prins JM, Bos JC, Eeftinck-Schattenkerk JKM, Geerlings SE, Godfried MH, Lange JMA, van der Meer JTM, Nellen FJB, Olszyna DP, van der Poll T, Reiss P, Sankatsing SUC, Steingrover R, van der Valk M, Vermeulen JN, Vrouenraets SME, van Vugt M, Wit FWMN, Schreij G, van der Geest S]] , Viral load levels measured at set-point have risen over the last decade of the HIV epidemic in the Netherlands. PLOS ONE 2009;4 (10):e7365 [PubMed]
Haasnoot J, Berkhout B, Nucleic acids-based therapeutics in the battle against pathogenic viruses. HANDB EXP PHARMACOL 2009;189 (189):243-263 [PubMed]
Haché G, Abbink TEM, Berkhout B, Harris RS, Optimal translation initiation enables Vif-deficient human immunodeficiency virus type 1 to escape restriction by APOBEC3G. J VIROL 2009;83 (11):5956-5960 [PubMed]
Jeeninga RE, de Jong MD, Berkhout B, The New Influenza A (H1N1) Pandemic. J FORMOS MED ASSOC 2009;108 (7):523-525 [PubMed]
Kleibeuker W, Zhou X, Centlivre M, Legrand N, Page M, Almond N, Berkhout B, Das AT, A Sensitive Cell-Based Assay to Measure the Doxycycline Concentration in Biological Samples. HUM GENE THER 2009;20 (5):524-530 [PubMed]
Kozaczynska K. HIV-1 superinfection. s.l.: s.n.; 2009. 148p. ISBN 9789490371036 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): Cornelissen MTE, van der Kuyl AC)
Liu YP. Combinatorial RNAi against HIV-1. s.l.: s.n.; 2009. 179p. ISBN 9789490371043 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): )
Liu YP, Berkhout B, Lentiviral Delivery of RNAi Effectors Against HIV-1. CURR TOP MED CHEM 2009;9 (12):1130-1143 [PubMed]
Liu YP, Gruber J, Haasnoot J, Konstantinova P, Berkhout B, RNAi-mediated inhibition of HIV-1 by targeting partially complementary viral sequences. NUCLEIC ACIDS RES 2009;37 (18):6194-6204 [PubMed]
Liu YP, von Eije KJ, Schopman NC, Westerink JT, Brake OT, Haasnoot J, Berkhout B, Combinatorial RNAi Against HIV-1 Using Extended Short Hairpin RNAs. MOL THER 2009;17 (10):1712-1723 [PubMed]
Mocroft A, Sterne JAC, Egger M, May M, Grabar S, Furrer H, Sabin C, Fatkenheuer G, Justice A, Reiss P, D'Arminio Monforte A, Gill J, Hogg R, Bonnet F, Kitahata M, Staszewski S, Casabona J, Harris R, Saag M [Contributors: Casabona J, Chêne G, Costagliola D, Dabis F, D'Arminio Monforte A, de Wolf F, Egger M, Fatkenheuer G, Gill J, Hogg R, Justice A, Kitahata M, Ledergerber B, Mocroft A, Phillips A, Reiss P, Saag M, Sabin C, Staszewski S, Weller I, May M, Harris R, Sterne J, Abgrall S, Barin F, Bentata M, Billaud E, Boué F, Burty C, Cabié A, Cotte L, de Truchis P, Duval X, Duvivier C, Enel P, Fredouille-Heripret L, Gasnault J, Gaud C, Gilquin J, Grabar S, Katlama C, Khuong MA, Lang JM, Lascaux AS, Launay O, Mahamat A, Mary-Krause M, Matheron S, Meynard JL, Pavie J, Pialoux G, Pilorgé F, Poizot-Martin I, Pradier C, Reynes J, Rouveix E, Simon A, Tattevin P, Tissot-Dupont H, Viard JP, Viget N, Pariente-Khayat A, Salomon V, Jacquemet N, Rivet A, Guiguet M, Kousignian I, Lanoy E, Lièvre L, Potard V, Selinger-Leneman H, Bouvet E, Crickx B, Ecobichon JL, Leport C, Picard-Dahan C, Yeni P, Tisne-Dessus D, Weiss L, Salmon D, Sicard D, Auperin I, Roudière L, Fior R, Delfraissy JF, Goujard C, Jung C, Lesprit P, Desplanque N, Meyohas MC, Picard O, Cadranel J, Mayaud C, Bricaire F, Herson S, Clauvel JP, Decazes JM, Gerard L, Molina JM, Diemer M, Sellier P, Berthé H, Dupont C, Chandemerle C, Mortier E, Honoré P, Jeantils V, Tassi S, Mechali D, Taverne B, Gourdon F, Laurichesse H, Fresard A, Lucht F, Eglinger P, Faller JP, Bazin C, Verdon R, Boibieux A, Peyramond D, Livrozet JM, Touraine JL, Trepo C, Ravaux I, Delmont JP, Moreau J, Gastaut JA, Retornaz F, Soubeyrand J, Allegre T, Blanc PA, Galinier A, Ruiz JM, Lepeu G, Granet-Brunello P, Esterni JP, Pelissier L, Cohen-Valensi R, Nezri M, Chadapaud S, Laffeuillade A, May T, Rabaud C, Raffi F, Arvieux C, Michelet C, Borsa-Lebas F, Caron F, Fraisse P, Rey D, Arlet-Suau E, Cuzin L, Massip P, Thiercelin Legrand MF, Yasdanpanah Y, Pradinaud R, Sobesky M, Contant M, Montroni M, Scalise G, Braschi MC, Riva A, Tirelli U, Martellotta F, Pastore G, Ladisa N, Suter F, Arici C, Chiodo F, Colangeli V, Fiorini C, Carosi G, Cristini G, Torti C, Minardi C, Bertelli D, Quirino T, Manconi PE, Piano P, Cosco L, Scerbo A, Vecchiet J, D'Alessandro M, Santoro D, Pusterla L, Carnevale G, Lorenzotti S, Viganò P, Mena M, Ghinelli F, Sighinolfi L, Leoncini F, Mazzotta F, Pozzi M, Lo Caputo S, Grisorio B, Ferrara S, Grima P, Grima PF, Pagano G, Cassola G, Alessandrini A, Piscopo R, Toti M, Trezzi M, Soscia F, Tacconi L, Orani A, Perini P, Scasso A, Vincenti A, Chiodera F, Castelli P, Scalzini A, Palvarini L, Moroni M, Lazzarin A, Rizzardini G, Caggese L, Cicconi P, Galli A, Merli S, Pastecchia C, Moioli MC, Esposito R, Mussini C, Abrescia N, Chirianni A, Izzo CM, Piazza M, de Marco M, Viglietti R, Manzillo E, Nappa S, Colomba A, Abbadessa V, Prestileo T, Mancuso S, Ferrari C, Pizzaferri P, Filice G, Minoli L, Bruno R, Novati S, Baldelli F, Camanni G, Petrelli E, Cioppi A, Alberici F, Ruggieri A, Menichetti F, Martinelli C, de Stefano C, La Gala A, Ballardini G, Rizzo E, Magnani G, Ursitti MA, Arlotti M, Ortolani P, Cauda R, Dianzani F, Ippolito G, Antinori A, Antonucci G, Ciardi M, Narciso P, Petrosillo N, Vullo V, de Luca A, Zaccarelli M, Acinapura R, de Longis P, Trotta MP, Noto P, Lichtner M, Capobianchi MR, Carletti F, Girardi E, Pezzotti P, Rezza G, Mura MS, Mannazzu M, Caramello P, Di Perri G, Orofino GC, Sciandra M, Grossi PA, Basilico C, Poggio A, Bottari G, Raise E, Ebo F, Pellizzer G, Buonfrate D, Resta F, Loso K, Cozzi Lepri A, Battegay M, Bernasconi E, Böni J, Bucher H, Bürgisser P, Cattacin S, Cavassini M, Dubs R, Elzi L, Erb P, Fischer M, Flepp M, Fontana A, Francioli P, Furrer H, Gorgievski M, Günthard H, Hirsch H, Hirschel B, Hösli I, Kahlert C, Kaiser L, Karrer U, Kind C, Klimkait T, Martinetti G, Martinez B, Müller N, Nadal D, Opravil M, Paccaud F, Pantaleo G, Rickenbach M, Rudin C, Schmid P, Schultze D, Schüpbach J, Speck R, Taffé P, Tarr P, Telenti A, Trkola A, Vernazza P, Weber R, Yerly S, Gras LA, van Sighem AI, Smit C, Bronsveld W, Hillebrand-Haverkort ME, Prins JM, Branger J, Eeftinck Schattenkerk JKM, Gisolf J, Godfried MH, Lange JMA, Lettinga KD, van der Meer JTM, Nellen FJB, van der Poll T, Ruys TA, Steingrover R, Vermeulen JN, Vrouenraets SME, van Vugt M, Wit FWMN, Kuijpers TW, Pajkrt D, Scherpbier HJ, van Eeden A, Brinkman K, van den Berk GEL, Blok WL, Frissen PHJ, Roos JC, Schouten WEM, Mulder JW, van Gorp ECM, Wagenaar J, Veenstra J, Danner SA, van Agtmael MA, Claessen FAP, Perenboom RM, Rijkeboer A, van Vonderen MGA, Richter C, van der Berg J, Vriesendorp R, Jeurissen FJF, Kauffmann RH, Pogány K, Bravenboer B, ten Napel CHH, Kootstra GJ, Sprenger HG, van Assen S, van Leeuwen JTM, Doedens R, Scholvinck EH, ten Kate RW, Soetekouw R, van Houte D, Polée MB, Kroon FP, van den Broek PJ, van Dissel JT, Schippers EF, Schreij G, van der Geest S, Lowe S, Verbon A, Koopmans PP, van Crevel R, de Groot R, Keuter M, Post F, van der Ven AJAM, Warris A, van der Ende ME, Gyssens IC, van der Feltz M, Nouwen JL, Rijnders BJA, de Vries TEMS, Driessen G, van der Flier M, Hartwig NG, Juttman JR, van Kasteren MEE, van de Heul C, Hoepelman IM, Schneider MME, Bonten MJM, Borleffs JCC, Ellerbroek PM, Jaspers CAJJ, Mudrikove T, Schurink CAM, Gisolf EH, Geelen SPM, Wolfs TFW, Faber T, Tanis AA, Groeneveld PHP, den Hollander JG, Duits AJ, Winkel K, Back NKT, Bakker MEG, Berkhout B, Jurriaans S, Zaaijer HL, Cuijpers T, Rietra PJGM, Roozendaal KJ, Pauw W, van Zanten AP, Smits PHM, von Blomberg BME, Savelkoul P, Pettersson A, Swanink CMA, Franck PFH, Lampe AS, Jansen CL, Hendriks R, Benne CA, Veenendaal D, Storm H, Weel J, van Zeijl JH, Kroes ACM, Claas HCJ, Bruggeman CAMVA, Goossens VJ, Galama JMD, Melchers WJG, Poort YAG, Doornum GJJ, Niesters MG, Osterhaus ADME, Schutten M, Buiting AGM, Swaans CAM, Boucher CAB, Schuurman R, Boel E, Jansz AF, Veldkamp A, Beijnen JH, Huitema ADR, Burger DM, Hugen PWH, van Kan HJM, Losso M, Duran A, Vetter N, Karpov I, Vassilenko A, Mitsura VM, Suetnov O, Clumeck N, de Wit S, Poll B, Colebunders R, Kostov K, Begovac J, Machala L, Rozsypal H, Sedlacek D, Nielsen J, Lundgren J, Benfield T, Kirk O, Gerstoft J, Katzenstein T, Hansen ABE, Skinhøj P, Pedersen C, Oestergaard L, Zilmer K, Ristola M, Girard PM, Vanhems P, Rockstroh J, Schmidt R, van Lunzen J, Degen O, Stellbrink HJ, Bogner J, Kosmidis J, Gargalianos P, Xylomenos G, Perdios J, Panos G, Filandras A, Karabatsaki E, Sambattakou H, Banhegyi D, Mulcahy F, Yust I, Turner D, Burke M, Pollack S, Hassoun G, Maayan S, Chiesi A, Mazeu I, Pristera R, Gabbuti A, Montesarchio E, Gargiulo M, Iacomi F, Vlassi C, Finazzi R, Galli M, Ridolfo A, Rozentale B, Aldins P, Chaplinskas S, Hemmer R, Staub T, Bruun J, Maeland A, Ormaasen V, Knysz B, Gasiorowski J, Horban A, Prokopowicz D, Wiercinska-Drapalo A, Boron-Kaczmarska A, Pynka M, Beniowski M, Mularska E, Trocha H, Antunes F, Valadas E, Mansinho K, Maltez F, Duiculescu D, Rakhmanova A, Vinogradova E, Buzunova S, Jevtovic D, Mokrás M, Staneková D, González-Lahoz J, Soriano V, Martin-Carbonero L, Labarga P, Clotet B, Jou A, Conejero J, Tural C, Gatell JM, Miró JM, Domingo P, Gutierrez M, Mateo G, Sambeat MA, Karlsson A, Persson PO, Flamholc L, Boffi E, Kravchenko E, Chentsova N, Barton S, Johnson AM, Mercey D, Johnson MA, Murphy M, Weber J, Scullard G, Fisher M, Brettle R, Gatell J, Gazzard B, Friis-Møller N, Bannister W, Ellefson M, Borch A, Podlekareva D, Holkmann Olsen C, Kjaer J, Peters L, Reekie J, Raffanti S, Dieterch D, Becker S, Scarsella A, Fusco G, Most B, Balu R, Rana R, Beckerman R, Ising T, Fusco J, Irek R, Johnson B, Hirani A, DeJesus E, Pierone G, Lackey P, Irek C, Johnson A, Burdick J, Leon S, Arch J, Helm EB, Carlebach A, Müller A, Haberl A, Nisius G, Lennemann T, Stephan C, Bickel M, Mösch M, Gute P, Locher L, Lutz T, Klauke S, Knecht G, Khaykin P, Doerr HW, Stürmer M, Babacan E, von Hentig N, Beylot J, Dupon M, Longy-Boursier M, Pellegrin JL, Ragnaud JM, Salamon R, Thiébaut R, Lewden C, Lawson-Ayayi S, Mercié P, Moreau JF, Morlat P, Bernard N, Lacoste D, Malvy D, Neau D, Blaizeau MJ, Decoin M, Delveaux S, Hannapier C, Labarrère S, Lavignolle-Aurillac V, Uwamaliya-Nziyumvira B, Palmer G, Touchard D, Balestre E, Alioum A, Jacqmin-Gadda H, Bonarek M, Bonnet F, Coadou B, Gellie P, Nouts C, Bocquentin F, Dutronc H, Lafarie S, Aslan A, Pistonne T, Thibaut P, Vatan R, Chambon D, de La Taille C, Cazorla C, Ocho A, Viallard JF, Caubet O, Cipriano C, Lazaro E, Couzigou P, Castera L, Fleury H, Lafon ME, Masquelier B, Pellegrin I, Breilh D, Blanco P, Loste P, Caunègre L, Bonnal F, Farbos S, Ferrand M, Ceccaldi J, Tchamgoué S, de Witte S, Buy E, Alexander C, Barrios R, Braitstein P, Brumme Z, Chan K, Cote H, Gataric N, Geller J, Guillemi S, Harrigan PR, Harris M, Joy R, Levy A, Montaner J, Montessori V, Palepu A, Phillips E, Phillips P, Press N, Tyndall M, Wood E, Yip B, Bhagani S, Breen R, Byrne P, Carroll A, Cuthbertson Z, Dunleavy A, Geretti AM, Heelan B, Johnson M, Kinloch-de Loes S, Lipman M, Madge S, Marshall N, Nair D, Nebbia G, Prinz B, Shah S, Swader L, Tyrer M, Youle M, Chaloner C, Grabowska H, Holloway J, Puradiredja J, Ransom D, Tsintas R, Bansi L, Fox Z, Harris E, Hill T, Lampe F, Lodwick R, Smith C, Amoah E, Booth C, Clewley G, Garcia Diaz A, Gregory B, Janossy G, Labbett W, Thomas M, Read R, Krentz H, Beckthold B, Schmeisser N, Alquézar A, Esteve A, Podzamczer D, Murillas J, Romero A, Agustí C, Agüero F, Ferrer E, Riera M, Segura F, Navarro G, Force L, Vilaró J, Masabeu A, García I, Guadarrama M, Montoliu A, Ortega N, Lazzari E, Puchol E, Sanchez M, Blanco JL, Garcia-Alcaide F, Martinez E, Mallolas J, López-Dieguez M, García-Goez JF, Sirera G, Romeu J, Negredo E, Miranda C, Capitan MC, Olmo M, Barragan P, Saumoy M, Bolao F, Cabellos C, Peña C, Sala M, Cervantes M, Jose Amengual M, Navarro M, Penelo E, Barrufet P, Raper JL, Mugavero MJ, Willig JH, Schumacher J, Chang PW, Westfall AO, Cloud G, Lin HY, Acosta EP, Colette-Kempf M, Allison JJ, Pisu M]] , Variable impact on mortality of AIDS-defining events diagnosed during combination antiretroviral therapy: not all AIDS-defining conditions are created equal. CLIN INFECT DIS 2009;48 (8):1138-1151 [PubMed]
Pasternak AO, Jurriaans S, Bakker M, Prins JM, Berkhout B, Lukashov VV, Cellular Levels of HIV Unspliced RNA from Patients on Combination Antiretroviral Therapy with Undetectable Plasma Viremia Predict the Therapy Outcome. PLOS ONE 2009;4 (12):e8490 [PubMed]
Schnettler E, de Vries W, Hemmes H, Haasnoot J, Kormelink R, Goldbach R, Berkhout B, The NS3 protein of rice hoja blanca virus complements the RNAi suppressor function of HIV-1 Tat. EMBO REP 2009;10 (3):258-263 [PubMed]
ter Brake O, Legrand N, von Eije KJ, Centlivre M, Spits H, Weijer K, Blom B, Berkhout B, Evaluation of safety and efficacy of RNAi against HIV-1 in the human immune system (Rag-2(-/-)gammac(-/-)) mouse model. GENE THER 2009;16 (1):148-153 [PubMed]
van Montfort T. Interaction of HIV-1 with dendritic cells; implications for pathogenesis. s.l.: s.n.; 2009. 176p. ISBN 9789490371012 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): Paxton WA)
Von Eije KJ. RNAi gene ttherapy for HIV-1, from bench to bedsite. s.l.: s.n.; 2009. 180p. ISBN 9789490371067 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B, Rossi JJ; copromotor(s): )
Von Eije KJ, Berkhout B, RNA-interference-based gene therapy approaches to HIV type-1 treatment: tackling the hurdles from bench to bedside. ANTIVIR CHEM CHEMOTHER 2009;19 (6):221-233 [PubMed]
Von Eije KJ, ter Brake O, Berkhout B, Stringent testing identifies highly potent and escape-proof anti-HIV short hairpin RNAs. J GENE MED 2009;11 (6):459-467 [PubMed]
Vrolijk MM, Harwig A, Berkhout B, Das AT, Destabilization of the TAR hairpin leads to extension of the polyA hairpin and inhibition of HIV-1 polyadenylation. RETROVIROLOGY 2009;6 (1):13 [PubMed]
Abbink TEM, Berkhout B, HIV-1 reverse transcription initiation: a potential target for novel antivirals?. VIRUS RES 2008;134 (1-2):4-18 [PubMed]
Abbink TEM, Berkhout B, RNA structure modulates splicing efficiency at the human immunodeficiency virus type 1 major splice donor. J VIROL 2008;82 (6):3090-3098 [PubMed]
Baldwin C, Berkhout B, Mechanistic studies of a T20-dependent human immunodeficiency virus type 1 variant. J VIROL 2008;82 (15):7735-7740 [PubMed]
Berkhout B, A balancing act: viruses and miRNAs. J FORMOS MED ASSOC 2008;107 (1):1-3 [PubMed]
Berkhout B, An Eye-opener for RNAi Therapeutics. J FORMOS MED ASSOC 2008;107 (10):749-750 [PubMed]
Berkhout B, Infectious Diseases of the Nervous System: Pathogenesis and Worldwide Impact. IDRUGS 2008;11 (11):791-794 [PubMed]
Berkhout B, Gorelick R, Summers MF, Mély Y, Darlix JL, 6th international symposium on retroviral nucleocapsid. RETROVIROLOGY 2008;5:21 [PubMed]
Bonneau KR, Ng S, Foster H, Choi KB, Berkhout B, Rabson A, Mackewicz CE, Levy JA, Derivation of infectious HIV-1 molecular clones with LTR mutations: sensitivity to the CD8+ cell noncytotoxic anti-HIV response. VIROLOGY 2008;373 (1):30-38 [PubMed]
Centlivre M, Klaver B, Berkhout B, Das AT, Functional analysis of the complex trans-activating response element RNA structure in simian immunodeficiency virus. J VIROL 2008;82 (18):9171-9178 [PubMed]
Das AT, Klaver B, Centlivre M, Harwig A, Ooms M, Page M, Almond N, Yuan F, Piatak M Jr, Lifson JD, Berkhout B, Optimization of the doxycycline-dependent simian immunodeficiency virus through in vitro evolution. RETROVIROLOGY 2008;5 (1):44 [PubMed]
de Vries M, Pyrc K, Berkhout R, Vermeulen-Oost W, Dijkman R, Jebbink MF, Bruisten S, Berkhout B, van der Hoek L, Human parechovirus type 1, 3, 4, 5, and 6 detection in picornavirus cultures. J CLIN MICROBIOL 2008;46 (2):759-762 [PubMed]
de Vries W, Berkhout B, RNAi suppressors encoded by pathogenic human viruses. INT J BIOCHEM CELL B 2008;40 (10):2007-2012 [PubMed]
de Vries W, Haasnoot J, van der velden JA, van Montfort T, Zorgdrager F, Paxton W, Cornelissen M, van Kuppeveld F, de Haan P, Berkhout B, Increased virus replication in mammalian cells by blocking intracellular innate defense responses. GENE THER 2008;15 (7):545-552 [PubMed]
Eggink D, Baldwin CE, Deng Y, Langedijk JPM, Lu M, Sanders RW, Berkhout B, Selection of T1249-resistant human immunodeficiency virus type 1 variants. J VIROL 2008;82 (13):6678-6688 [PubMed]
Jeeninga RE, Westerhout EM, van Gerven ML, Berkhout B, HIV-1 latency in actively dividing human T cell lines. RETROVIROLOGY 2008;5 (1):37 [PubMed]
Koff WC, Parks CL, Berkhout B, Ackland J, Noble S, Gust ID, Replicating viral vectors as HIV vaccines: Summary report from IAVI Sponsored Satellite Symposium, International AIDS Society Conference, July 22, 2007. BIOLOGICALS 2008;36 (5):277-286 [PubMed]
Lever AML, Berkhout B, 2008 Nobel prize in Medicine for discoverers of HIV. RETROVIROLOGY 2008;5 (1):91 [PubMed]
Liu YP, Berkhout B, Combinatorial RNAi strategies against HIV-1 and other escape-prone viruses. INT J BIOSCI TECHNOL 2008;1 (2):1-10
Liu YP, Haasnoot J, ter Brake O, Berkhout B, Konstantinova P, Inhibition of HIV-1 by multiple siRNAs expressed from a single microRNA polycistron. NUCLEIC ACIDS RES 2008;36 (9):2811-2824 [PubMed]
Mathewson AC, Bishop A, Yao Y, Kemp F, Ren J, Chen H, Xu X, Berkhout B, van der Hoek L, Jones IM, Interaction of severe acute respiratory syndrome-coronavirus and NL63 coronavirus spike proteins with angiotensin converting enzyme-2. J GEN VIROL 2008;89 (Part 11):2741-2745 [PubMed]
Menéndez-Arias L, Berkhout B, Retroviral reverse transcription - Preface. VIRUS RES 2008;134 (1-2):1-3 [PubMed]
Mugavero MJ, May M, Harris R, Saag MS, Costagliola D, Egger M, Phillips A, Günthard HF, Dabis F, Hogg R, de Wolf F, Fatkenheuer G, Gill MJ, Justice A, D'Arminio Monforte A, Lampe F, Miró JM, Staszewski S, Sterne JAC [Contributors: Casabona J, Geneviè C, Costagliola D, Dabis F, D'Arminio Monforte A, del Amo J, de Wolf F, Egger M, Fätkenheuer G, Gill J, Guest J, Hogg R, Justice A, Kitahata M, Lampe F, Ledergerber B, Mocroft A, Reiss P, Saag M, Staszewski S, May M, Harris R, Sterne J, Mugavero MJ, Saag MS, Phillips A, Günthard HF, Dabis F, Fatkenheuer G, Gill MJ, Miró JM, Sterne JAC, Abgrall S, Barin F, Bentata M, Billaud E, Boué F, Burty C, Cabié A, Costagliola D, Cotte L, de Truchis P, Duval X, Duvivier C, Enel P, Fredouille-Heripret L, Gasnault J, Gaud C, Gilquin J, Grabar S, Katlama C, Khuong MA, Lang JM, Lascaux AS, Launay O, Mahamat A, Mary-Krause M, Matheron S, Meynard JL, Pavie J, Pialoux G, Pilorgé F, Poizot-Martin I, Pradier C, Reynes J, Rouveix E, Simon A, Tattevin P, Tissot-Dupon H, Viard JP, Viget N, Pariente-Khayat A, Salomon V, Jacquemet N, Rivet A, Abgral S, Guiguet M, Kousignian I, Lanoy E, Lièvre L, Potard V, Selinger-Leneman H, Bouvet E, Crickx B, Ecobichon JL, Leport C, Picard-Dahan C, Yeni P, Tisne-Dessus D, Weiss L, Salmon D, Sicard D, Auperin I, Roudière L, Fior R, Delfraissy JF, Goujard C, Jung C, Lesprit P, Desplanque N, Meyohas MC, Picard O, Cadranel J, Mayaud C, Bricaire F, Herson S, Clauvel JP, Decazes JM, Gerard L, Molina JM, Diemer M, Sellier P, Berthé H, Dupont C, Chandemerle C, Mortier E, Honoré P, Jeantils V, Tassi S, Mechali D, Taverne B, Gourdon F, Laurichesse H, Fresard A, Lucht F, Eglinger P, Faller JP, Bazin C, Verdon R, Boibieux A, Peyramond D, Livroze JM, Touraine JL, Trepo C, Ravaux I, Tissot-Dupont H, Delmont JP, Moreau J, Gastaut JA, Retornaz F, Soubeyrand J, Allegre T, Blanc PA, Galinier A, Ruiz JM, Lepeu G, Granet-Brunello P, Esterni JP, Pelissier L, Cohen-Valensi R, Nezri M, Chadapaud S, Laffeuillade A, Laffeuillade J, May T, Rabaud C, Raffi F, Pugliese P, Arvieux C, Michelet C, Borsa-Lebas F, Caron F, Fraisse P, Rey D, Arlet-Suau E, Cuzin L, Massip P, Thiercelin Legrand MF, Yasdanpanah Y, Pradinaud R, Sobesky M, Contant M, Montroni M, Scalise G, Braschi MC, Riva A, Tirelli U, Cinelli R, Pastore G, Ladisa N, Suter F, Arici C, Chiodo F, Colangeli V, Fiorini C, Carosi G, Cristini G, Torti C, Minardi C, Bertelli D, Quirino T, Manconi PE, Piano P, Cosco L, Scerbo A, Vecchiet J, D'Alessandro M, Santoro D, Pusterla L, Carnevale G, Zoncada A, Viganò P, Mena M, Ghinelli F, Sighinolfi L, Leoncini F, Mazzotta F, Pozzi M, Lo Caputo S, Angarano G, Grisorio B, Saracino A, Ferrara S, Grima P, Grima F, Pagano G, Cassola G, Alessandrini A, Piscopo R, Toti M, Trezzi M, Soscia F, Tacconi L, Orani A, Perini P, Scasso A, Vincenti A, Chiodera F, Castelli P, Scalzini A, Palvarini L, Moroni M, Lazzarin A, Rizzardini G, d'Arminio Monforte A, Galli A, Merli S, Pastecchia C, Moioli MC, Esposito R, Mussini C, Abresci N, Chirianni A, Izzo CM, Piazza M, de Marco M, Viglietti R, Manzillo E, Nappa S, Colomba A, Abbadessa V, Prestileo T, Mancuso S, Ferrari C, Pizzaferri P, Filice G, Minoli L, Bruno R, Novati S, Baldelli F, Tinca M, Petrelli E, Cioppi A, Cioppi F, Ruggieri A, Menichetti F, Martinelli C, de Stefano C, La Gala A, Ballardini G, Rizzo E, Magnani G, Ursitti MA, Arlotti M, Ortolani P, Cauda R, Dianzani F, Ippolito G, Antinori A, Antonucci G, Ciardi M, Narciso P, Petrosillo N, Vullo V, de Luca A, Zaccarelli M, Acinapura R, de Longis P, Brandi A, Trotta MP, Noto P, Lichtne M, Capobianch MR, Carletti F, Girardi E, Pezzotti P, Rezza G, Mura MS, Mannazzu M, Caramello P, Di Perri G, Sciandra M, Orofino GC, Grossi PA, Basilico C, Poggio A, Bottari G, Raise E, Ebo F, Pellizzer G, Buonfrate D, Resta F, Loso K, Cozzi Lepri A, Battegay M, Bernasconi E, Böni J, Bucher HC, Bürgisser P, Calmy A, Cattacin S, Cavassini M, Dubs R, Egger M, Elzi L, Fischer M, Flepp M, Fontana A, Francioli P, Furrer H, Fux C, Gorgievski M, Günthard H, Hirsch H, Hirschel B, Hösli I, Kahlert C, Kaiser L, Karrer U, Kind C, Klimkait T, Ledergerber B, Martinetti G, Martinez B, Martinez N, Nadal D, Opravil M, Paccaud F, Pantaleo G, Rauch A, Regenass S, Rickenbach M, Rudin C, Schmid P, Schultze D, Schüpbach J, Speck R, Taffé P, Telenti A, Trkola A, Vernazza P, Weber R, Yerly S, Gras LA, van Sighem AI, Smit C, de Wolf F, Prins JM, Branger J, Eeftinck Schattenkerk JKM, Gisolf J, Godfried MH, Lange JMA, Lettinga KD, van der Meer JTM, Nellen FJB, van der Poll T, Reiss P, Ruys TA, Steingrover R, Vermeulen JN, Vrouenraets SME, van Vugt M, Wit FWMN, Kuijpers TW, Pajkrt D, Scherpbier HJ, van Eeden A, Brinkman K, van den Berk GEL, Blok WL, Frissen PHJ, Roos JC, Schouten WEM, Mulder JW, van Gorp ECM, Wagenaar J, Veenstra J, Danner SA, van Agtmael MA, Claessen FAP, Perenboom RM, Rijkeboer A, van Vonderen MGA, Richter C, van der Berg J, Vriesendorp R, Jeurissen FJF, Kauffmann RH, Pogány K, Bravenboer B, Sprenger HG, van Assen S, van Leeuwen JTM, Doedens R, Scholvinck EH, ten Kate RW, Soetekouw R, van Houte D, Polée MB, Kroon FP, van den Broek PJ, van Dissel JT, Schippers EF, Schreij G, van der Geest S, Lowe S, Verbon A, Koopmans PP, van Crevel R, de Groot R, Keuter M, Post F, van der Ven AJAM, Warris A, van der Ende ME, Gyssens IC, van der Feltz M, Nouwen JL, Rijnders BJA, de Vries TEMS, Driessen G, van der Flier M, Hartwig NG, Juttman JR, van Kasteren MEE, van de Heul C, Hoepelman IM, Schneider MME, Bonten MJM, Borleffs JCC, Ellerbroek PM, Jaspers CAJJ, Mudrikove T, Schurink CAM, Gisolf EH, Geelen SPM, Wolfs TFW, Faber T, Tanis AA, Groeneveld PHP, den Hollander JG, Duits AJ, Winkel K, Back NKT, Bakker MEG, Berkhout B, Jurriaans S, Zaaijer HL, Cuijpers T, Rietra PJGM, Roozendaal KJ, Pauw W, van Zanten AP, Smits PHM, von Blomberg BME, Savelkoul P, Pettersson A, Swanink CMA, Franck PFH, Lampe AS, Jansen CL, Hendriks R, Benne CA, Veenendaal D, Storm H, Weel J, van Zeijl JH, Kroes ACM, Claas HCJ, Bruggeman CAMVA, Goossens VJ, Galama JMD, Melchers WJG, Poort YAG, Doornum GJJ, Niesters MG, Osterhaus ADME, Schutten M, Buiting AGM, Swaans CAM, Boucher CAB, Schuurman R, Boel E, Jansz AF, Veldkamp A, Beijnen JH, Huitema ADR, Burger DM, Hugen PWH, van Kan HJM, Losso M, Duran A, Vetter N, Karpov I, Vassilenko A, Clumeck N, de Wit S, Poll B, Colebunders R, Machala L, Rozsypal H, Sedlacek D, Nielsen J, Lundgren J, Benfield T, Kirk O, Gerstoft J, Katzenstein T, Hansen ABE, Skinhøj P, Pedersen C, Zilmer K, Viard JP, Girard PM, Saint-Marc T, Vanhems P, Dabis F, Dietrich M, Manegold C, van Lunzen J, Stellbrink HJ, Staszewsk S, Bickel M, Goebel FD, Fätkenheuer G, Rockstroh J, Schmidt R, Kosmidis J, Gargalianos P, Sambatakou H, Perdios J, Panos G, Filandras A, Karabatsaki E, Banhegyi D, Mulcahy F, Yust I, Turner D, Burke M, Pollack S, Hassoun G, Sthoeger Z, Maayan S, Chiesi A, Borghi R, Pristera R, Mazzott F, Gabbuti A, Lichtner M, Montesarchio E, Iacomi F, Finazzi R, Viksna L, Chaplinskas S, Hemmer R, Staub T, Bruun J, Maeland A, Ormaasen V, Knysz B, Gasiorowski J, Horban A, Prokopowicz D, Wiercinska-Drapalo A, Boron-Kaczmarska A, Pynka M, Beniowski M, Mularska E, Trocha H, Antunes F, Valadas E, Mansinho K, Matez F, Duiculescu D, Babes V, Streinu-Cercel A, Vinogradova E, Rakhmanova A, Jevtovic D, Mokrás M, Staneková D, González-Lahoz J, Sánchez-Conde M, García-Benayas T, Martin-Carbonero L, Soriano V, Clotet B, Jou A, Conejero J, Tural C, Gatell JM, Miró JM, Blaxhult A, Karlsson A, Pehrson P, Soravia-Dunand V, Kravchenko E, Chentsova N, Barton S, Johnson AM, Mercey D, Phillips A, Johnson MA, Mocroft A, Murphy M, Weber J, Scullard G, Fisher M, Brettle R, Loveday C, Antunes F, Blaxhult A, Clumeck N, Gatell J, Horban A, Johnson A, Katlama C, Loveday C, Vella S, Gjørup I, Friis-Moeller N, Cozzi-Lepri A, Bannister W, Mollerup D, Podlevkareva D, Holkmann Olsen C, Kjaer J, Raffanti S, Dieterch D, Becker S, Scarsella A, Fusco G, Most B, Balu R, Rana R, Beckerman R, Ising T, Fusco J, Irek R, Johnson B, Hirani A, DeJesus E, Pierone G, Lackey P, Irek C, Johnson A, Burdick J, Leon S, Arch J, Helm EB, Carlebach A, Müller A, Haberl A, Nisius G, Lennemann T, Stephan C, Bickel M, Mösch M, Gute P, Locher L, Lutz T, Klauke S, Knecht G, Khaykin P, Doerr HW, Stürmer M, Babacan E, von Hentig N, Beylot J, Chêne G, Dupon M, Longy-Boursier M, Pellegrin JL, Ragnaud JM, Salamon R, Thiébaut R, Lewden C, Lawson-Ayayi S, Mercié P, Moreau JF, Morlat P, Bernard N, Lacoste D, Malvy D, Neau D, Blaizeau MJ, Decoin M, Delveaux S, Hannapier C, Labarrère S, Lavignolle-Aurillac V, Uwamaliya-Nziyumvira B, Palmer G, Touchard D, Balestre E, Alioum A, Jacqmin-Gadda H, Bonarek M, Bonnet F, Coadou B, Gellie P, Nouts C, Bocquentin F, Dutronc H, Lafarie S, Aslan A, Pistonne T, Thibaut P, Vatan R, Chambon D, de La Taille C, Cazorla C, Ocho A, Viallard JF, Caubet O, Cipriano C, Lazaro E, Couzigou P, Castera L, Fleury H, Lafon ME, Masquelier B, Pellegrin I, Breilh D, Blanco P, Loste P, Caunègre L, Bonna F, Farbos S, Ferrand M, Ceccaldi J, Tchamgoué S, de Witte S, Buy E, Akagi L, Brandson E, Druyts E, Gataric KFN, Harrigan PR, Harris M, Hayden A, Lima V, Montaner J, Moore D, Wood E, Yip B, Zhang W, Bhagani S, Byrne P, Carroll A, Cuthbertson Z, Dunleavy A, Geretti AM, Heelan B, Johnson M, Kinloch-de Loes S, Lipman M, Madge S, Marshall N, Nair D, Nebbia G, Prinz B, Swaden L, Tyrer M, Youle M, Chaloner C, Grabowska H, Holloway J, Puradiredja J, Ransom D, Tsintas R, Bansi L, Fox Z, Harris E, Hill T, Lampe F, Lodwick R, Reekie J, Sabin C, Smith C, Amoah E, Booth C, Clewley G, Garcia Diaz A, Gregory B, Labbett W, Tahami F, Thomas M, Read R, Krentz H, Beckthold B, Faetkenheuer G, Rockstroh J, Casabona J, Miró JL, Alquézar A, Esteve A, Podzamczer D, Murillas J, Romero A, Agustí C, Agüero F, Ferrer E, Riera M, Segura F, Segura G, Force L, Vilaró J, Masabeu A, García I, Guadarrama M, Montoliu A, Ortega N, Lazzari E, Puchol E, Sanchez M, Blanco JL, Garcia-Alcaide F, Martinez E, Mallolas J, López-Dieguez M, García-Goez JF, Sirera G, Romeu J, Negredo E, Miranda C, Capitan MC, Olmo M, Barragan P, Saumoy M, BolaoF F, Cabellos C, Peña C, Sala M, Cervantes M, Amengual MJ, Navarro M, Penelo E, Barrufet P, Willig JH, Raper JL, Allison JJ, Kempf MC, Schumacher JE, Wes AO, Lin HY, Pisu M, Moneyham L, Vance D, Bachmann L, Davies SL, Berner E, Acosta E, King J, Savage K, Nevin C, Walton FB, Marler ML, Lawrence S, Files-Kennedy B, Batey DS, Patil MA, Patil U, Varshney M, Gibson E, Guzman A, Rinehart D, Justice AC, Fiellin DA, Bryant K, Rimland D, Jones-Taylor C, Oursler KA, Titanji R, Brown S, Garrison S, Rodriguez-Barradas M, Masozera N, Goetz M, Leaf D, Simberkoff M, Blumenthal D, Leung J, Butt A, Hoffman E, Gibert C, Peck R, Mattocks K, Braithwaite S, Brandt C, Cook R, Conigliaro J, Crothers K, Chang J, Crystal S, Day N, Erdos J, Freiberg M, Kozal M, Gaziano M, Gerschenson M, Good B, Gordon A, Goulet J, Kraemer K, Lim J, Maisto S, Miller P, O'Connor P, Papas R, Rinaldo C, Roberts M, Samet J, Cohen D, Consorte A, Gordon K, Kidwai F, Levin F, McGinnis K, Rambo M, Rogers J, Skanderson M, Whitsett F]] , Does short-term virologic failure translate to clinical events in antiretroviral-naïve patients initiating antiretroviral therapy in clinical practice?. AIDS 2008;22 (18):2481-2492 [PubMed]
Pasternak AO, Adema KW, Bakker M, Jurriaans S, Berkhout B, Cornelissen M, Lukashov VV, Highly sensitive methods based on seminested real-time reverse transcription-PCR for quantitation of human immunodeficiency virus type 1 unspliced and multiply spliced RNA and proviral DNA. J CLIN MICROBIOL 2008;46 (7):2206-2211 [PubMed]
Pyrc K, Jebbink MF, Berkhout B, van der Hoek L, Detection of New Viruses by VIDISCA : Virus Discovery Based on cDNA-Amplified Fragment Length Polymorphism. METHODS MOL BIOL 2008;454:1-17 [PubMed]
Ringrose JH, Jeeninga RE, Berkhout B, Speijer D, Proteomic studies reveal coordinated changes in T-cell expression patterns upon infection with human immunodeficiency virus type 1. J VIROL 2008;82 (9):4320-4330 [PubMed]
Sanders RW, Hsu STD, van Anken E, Liscaljet IM, Dankers M, Bontjer I, Land A, Braakman I, Bonvin AMJJ, Berkhout B, Evolution rescues folding of human immunodeficiency virus-1 envelope glycoprotein GP120 lacking a conserved disulfide bond. MOL BIOL CELL 2008;19 (11):4707-4716 [PubMed]
Sanders RW, van Anken E, Nabatov AA, Liscaljet IM, Bontjer I, Eggink D, Melchers M, Busser E, Dankers MM, Groot F, Braakman I, Berkhout B, Paxton WA, The carbohydrate at asparagine 386 on HIV-1 gp120 is not essential for protein folding and function but is involved in immune evasion. RETROVIROLOGY 2008;5:10 [PubMed]
Smit C, van den Berg C, Geskus R, Berkhout B, Coutinho R, Prins M, Risk of hepatitis-related mortality increased among hepatitis C virus/HIV-coinfected drug users compared with drug users infected only with hepatitis C virus: a 20-year prospective study. JAIDS-J ACQ IMM DEF 2008;47 (2):221-225 [PubMed]
ter Brake O, Berkhout B. Development of an RNAi-based gene therapy agains HIV-1 in: Kurreck J, editor. Therapeutic Oligonucleotides. Stuttgart: RSCPublishing; 2008., p. 296-311
ter Brake O, Haasnoot J, Kurreck J, Berkhout B, ESF-EMBO symposium: antiviral applications of RNA interference. RETROVIROLOGY 2008;5 (1):81 [PubMed]
ter Brake O, 't Hooft K, Liu YP, Centlivre M, von Eije KJ, Berkhout B, Lentiviral vector design for multiple shRNA expression and durable HIV-1 inhibition. MOL THER 2008;16 (3):557-564 [PubMed]
ter Brake O, Von Eije KJ, Berkhout B, Probing the sequence space available for HIV-1 evolution. AIDS 2008;22 (14):1875-1877 [PubMed]
van Anken E, Sanders RW, Liscaljet IM, Land A, Bontjer I, Tillemans S, Nabatov AA, Paxton WA, Berkhout B, Braakman I, Only five of 10 strictly conserved disulfide bonds are essential for folding and eight for function of the HIV-1 envelope glycoprotein. MOL BIOL CELL 2008;19 (10):4298-4309 [PubMed]
van Hemert FJ, Zaaijer HL, Berkhout B, Lukashov VV, Mosaic amino acid conservation in 3D-structures of surface protein and polymerase of hepatitis B virus. VIROLOGY 2008;370 (2):362-372 [PubMed]
van Hemert FJ, Zaaijer HL, Berkhout B, Lukashov VV, Occult hepatitis B infection: an evolutionary scenario. VIROL J 2008;5 (1):146 [PubMed]
von Eije KJ, ter Brake O, Berkhout B, Human immunodeficiency virus type 1 escape is restricted when conserved genome sequences are targeted by RNA interference. J VIROL 2008;82 (6):2895-2903 [PubMed]
Vrolijk MM, Ooms M, Harwig A, Das AT, Berkhout B, Destabilization of the TAR hairpin affects the structure and function of the HIV-1 leader RNA. NUCLEIC ACIDS RES 2008;36 (13):4352-4363 [PubMed]
Wu PS, Chang LY, Berkhout B, van der Hoek L, Lu CY, Kao CL, Lee PI, Shao PL, Lee CY, Huang FY, Huang LM, Clinical manifestations of human coronavirus NL63 infection in children in Taiwan. EUR J PEDIATR 2008;167 (1):75-80 [PubMed]
Abbink TEM, Berkhout B, HIV-1 reverse transcription: close encounters between the viral genome and a cellular tRNA. ADV PHARMACOL 2007;55:99-135 [PubMed]
Baldwin C, Berkhout B, HIV-1 drug-resistance and drug-dependence. RETROVIROLOGY 2007;4 (1):78 [PubMed]
Berkhout B, Third European Congress of Virology. 1-5 September 2007, Nuremberg, Germany. IDRUGS 2007;10 (11):772-774 [PubMed]
Berkhout B, Jeang KT, RISCy business: MicroRNAs, pathogenesis, and viruses. J BIOL CHEM 2007;282 (37):26641-26645 [PubMed]
Centlivre M, Sala M, Wain-Hobson S, Berkhout B, In HIV-1 pathogenesis the die is cast during primary infection. AIDS 2007;21 (1):1-11 [PubMed]
Crotti A, Chiara GD, Ghezzi S, Lupo R, Jeeninga RE, Liboi E, Lievens PMJ, Vicenzi E, Bovolenta C, Berkhout B, Poli G, Heterogeneity of signal transducer and activator of transcription binding sites in the long-terminal repeats of distinct HIV-1 subtypes. OPEN VIROL J 2007;1:26-32 [PubMed]
Das AT, Harwig A, Vrolijk MM, Berkhout B, The TAR hairpin of human immunodeficiency virus type 1 can be deleted when not required for Tat-mediated activation of transcription. J VIROL 2007;81 (14):7742-7748 [PubMed]
Das AT, Klaver B, Harwig A, Vink M, Ooms M, Centlivre M, Berkhout B, Construction of a doxycycline-dependent simian immunodeficiency virus reveals a nontranscriptional function of tat in viral replication. J VIROL 2007;81 (20):11159-11169 [PubMed]
Gali Y, Berkhout B, Vanham G, Bakker M, Back NKT, Arien KK, Survey of the temporal changes in HIV-1 replicative fitness in the Amsterdam Cohort. VIROLOGY 2007;364 (1):140-146 [PubMed]
Geskus RB, Prins M, Hubert JB, Miedema F, Berkhout B, Rouzioux C, Delfraissy JF, Meyer L, The HIV RNA setpoint theory revisited. RETROVIROLOGY 2007;4:65 [PubMed]
Haasnoot J, de Vries W, Geutjes EJ, Prins M, de Haan P, Berkhout B, The Ebola virus VP35 protein is a suppressor of RNA silencing. PLOS PATHOG 2007;3 (6):e86 [PubMed]
Haasnoot J, Westerhout EM, Berkhout B, RNA interference against viruses: strike and counterstrike. NAT BIOTECHNOL 2007;25 (12):1435-1443 [PubMed]
Jakobsen MR, Haasnoot J, Wengel J, Berkhout B, Kjems J, Efficient inhibition of HIV-1 expression by LNA modified antisense oligonucleotides and DNAzymes targeted to functionally selected binding sites. RETROVIROLOGY 2007;4:29 [PubMed]
Konstantinova P, ter Brake O, Haasnoot J, de Haan P, Berkhout B, Trans-inhibition of HIV-1 by a long hairpin RNA expressed within the viral genome. RETROVIROLOGY 2007;4:15 [PubMed]
Liu YP, Haasnoot J, Berkhout B, Design of extended short hairpin RNAs for HIV-1 inhibition. NUCLEIC ACIDS RES 2007;35 (17):5683-5693 [PubMed]
Naarding MA. Inhibition of mother to child transmission of HIV-1 during breastfeeding. s.l.: s.n.; 2007. 162p. ISBN 9789078675020 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): Paxton WA)
Ooms M, Abbink TEM, Pham C, Berkhout B, Circularization of the HIV-1 RNA genome. NUCLEIC ACIDS RES 2007;35 (15):5253-5261 [PubMed]
Ooms M, Cupac D, Abbink TEM, Huthoff H, Berkhout B, The availability of the primer activation signal (PAS) affects the efficiency of HIV-1 reverse transcription initiation. NUCLEIC ACIDS RES 2007;35 (5):1649-1659 [PubMed]
Ooms MPW. Regulatory RNA structures in the HIV-1 genome. s.l.: s.n.; 2007. 135p. ISBN 9789085701743 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): )
Pyrc KA. Virus discovery and human coronavirus NL63. s.l.: s.n.; 2007. 278p. [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): van der Hoek CM)
Pyrc K, Berkhout B, van der Hoek L, Antiviral strategies against human coronaviruses. INFECT DISORD DRUG TARGETS 2007;7 (1):59-66 [PubMed]
Pyrc K, Berkhout B, van der Hoek L, Identification of new human coronaviruses. EXPERT REV ANTI-INFE 2007;5 (2):245-253 [PubMed]
Pyrc K, Berkhout B, van der Hoek L, The novel human coronaviruses NL63 and HKU1. J VIROL 2007;81 (7):3051-3057 [PubMed]
Smit C, Pfrommer C, Mindel A, Taylor J, Spaargaren J, Berkhout B, Coutinho R, Dukers NHTM, Rise in seroprevalence of herpes simplex virus type 1 among highly sexual active homosexual men and an increasing association between herpes simplex virus type 2 and HIV over time (1984-2003). EUR J EPIDEMIOL 2007;22 (12):937-944 [PubMed]
ter Brake O. Development of an RNAi based gene therapy against HIV-1. s.l.: s.n.; 2007. 116p. ISBN 9789090216973 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): )
ter Brake O, Berkhout B, Lentiviral vectors that carry anti-HIV shRNAs: problems and solutions. J GENE MED 2007;9 (9):743-750 [PubMed]
van den Berg CHSB, Smit C, Bakker M, Geskus RB, Berkhout B, Jurriaans S, Coutinho RA, Wolthers KC, Prins M, Major decline of hepatitis C virus incidence rate over two decades in a cohort of drug users. EUR J EPIDEMIOL 2007;22 (3):183-193 [PubMed]
van der Hoek L, Pollakis G, Lukashov VV, Jebbink MF, Jeeninga RE, Bakker M, Dukers N, Jurriaans S, Paxton WA, Back NKT, Berkhout B, Characterization of an HIV-1 group M variant that is distinct from the known subtypes. AIDS RES HUM RETROV 2007;23 (3):466-470 [PubMed]
van der Kuyl AC, van den Burg R, Zorgdrager F, Groot F, Berkhout B, Cornelissen M, Sialoadhesin (CD169) expression in CD14+ cells is upregulated early after HIV-1 infection and increases during disease progression. PLOS ONE 2007;2 (2):e257 [PubMed]
van Hemert FJ, Berkhout B, Lukashov VV, Host-related nucleotide composition and codon usage as driving forces in the recent evolution of the Astroviridae. VIROLOGY 2007;361 (2):447-454 [PubMed]
van Hemert FJ, Lukashov VV, Berkhout B, Different rates of (non-)synonymous mutations in astrovirus genes; correlation with gene function. VIROL J 2007;4:25 [PubMed]
van Opijnen T, de Ronde A, Boerlijst MC, Berkhout B, Adaptation of HIV-1 depends on the host-cell environment. PLOS ONE 2007;2 (3):e271 [PubMed]
van Wilpe S, Jurriaans S, Stroobants AK , Berkhout B, Sturk A, Toepassing van een HIV-sneltest in de praktijk. NED TIJDSCHR KLIN CHEM LABORATORIUMGENEESKD 2007;32:232-236
Westerhout EM. Silencing of HIV-1 with RNAi. s.l.: s.n.; 2007. 120p. ISBN 9789085701880 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): )
Westerhout EM, Berkhout B, A systematic analysis of the effect of target RNA structure on RNA interference. NUCLEIC ACIDS RES 2007;35 (13):4322-4330 [PubMed]
Zhou X. Optimization of the conditional-live HIV-1 vaccine strain. s.l.: s.n.; 2007. 113p. ISBN 9789090214689 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): Das AT)
Zhou X, Symons J, Hoppes R, Krueger C, Berens C, Hillen W, Berkhout B, Das AT, Improved single-chain transactivators of the Tet-On gene expression system. BMC BIOTECHNOL 2007;7:6 [PubMed]
Ahuja SK, Aiuti F, Berkhout B, Biberfeld P, Burton DR, Colizzi V, Deeks SG, Desrosiers RC, Dierich MP, Doms RW, Emerman M, Gallo RC, Girard M, Greene WC, Hoxie JA, Hunter E, Klein G, Korber B, Kuritzkes DR, Lederman MM, Malim MH, Marx PA, McCune JM, McMichael A, Miller C, Miller V, Montagnier L, Montefiori DC, Moore JP, Nixon DF, Overbaugh J, Pauza CD, Richman DD, Saag MS, Sattentau Q, Schooley RT, Shattock R, Shaw GM, Stevenson M, Trkola A, Wainberg MA, Weiss RA, Wolinsky S, Zack JA, A plea for justice for jailed medical workers. SCIENCE 2006;314 (5801):924-925 [PubMed]
Baldwin CE, Berkhout B, Second site escape of a T20-dependent HIV-1 variant by a single amino acid change in the CD4 binding region of the envelope glycoprotein. RETROVIROLOGY 2006;3:84 [PubMed]
Benschop KSM, Schinkel J, Minnaar RP, Pajkrt D, Spanjerberg L, Kraakman HC, Berkhout B, Zaaijer HL, Beld MGHM, Wolthers KC, Human parechovirus infections in Dutch children and the association between serotype and disease severity. CLIN INFECT DIS 2006;42 (2):204-210 [PubMed]
Berkhout B, Back NK, de Ronde A, Jurriaans S, Bakker M, Parkin NT, van der Hoek L, Identification of alternative amino acid substitutions in drug-resistant variants of the HIV-1 reverse transcriptase. AIDS 2006;20 (11):1515-1520 [PubMed]
Berkhout B, Haasnoot J, The interplay between virus infection and the cellular RNA interference machinery. FEBS LETT 2006;580 (12):2896-2902 [PubMed]
Chang LY, Chiang BL, Kao CL, Wu MH, Chen PJ, Berkhout B, Yang HC, Huang LM, Lack of association between infection with a novel human coronavirus (HCoV), HCoV-NH, and Kawasaki disease in Taiwan. J INFECT DIS 2006;193 (2):283-286 [PubMed]
Dijkman R, Jebbink MF, Wilbrink B, Pyrc K, Zaaijer HL, Minor PD, Franklin S, Berkhout B, Thiel V, van der Hoek L, Human coronavirus 229E encodes a single ORF4 protein between the spike and the envelope genes. VIROL J 2006;3:106 [PubMed]
Eberhardy SR, Goncalves J, Coelho S, Segal DJ, Berkhout B, Barbas CF 3rd, Inhibition of human immunodeficiency virus type 1 replication with artificial transcription factors targeting the highly conserved primer-binding site. J VIROL 2006;80 (6):2873-2883 [PubMed]
Groot F. Dendritic cell-mediated HIV-1 transmission. S.l.: s.n.; 2006. 171p. ISBN 90-8559-192-9 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B, Kapsenberg ML; copromotor(s): de Jong EC)
Groot F, Kuijpers TW, Berkhout B, de Jong EC, Dendritic cell-mediated HIV-1 transmission to T cells of LAD-1 patients is impaired due to the defect in LFA-1. RETROVIROLOGY 2006;3:75 [PubMed]
Groot F, Sanders RW, ter Brake O, Nazmi K, Veerman ECI, Bolscher JGM, Berkhout B, Histatin 5-derived peptide with improved fungicidal properties enhances human immunodeficiency virus type 1 replication by promoting viral entry. J VIROL 2006;80 (18):9236-9243 [PubMed]
Groot F, van Capel TMM, Kapsenberg ML, Berkhout B, de Jong EC, Opposing roles of blood myeloid and plasmacytoid dendritic cells in HIV-1 infection of T cells: transmission facilitation versus replication inhibition. BLOOD 2006;108 (6):1957-1964 [PubMed]
Groot F, van Capel TMM, Schuitemaker J, Berkhout B, de Jong EC, Differential susceptibility of naïve, central memory and effector memory T cells to dendritic cell-mediated HIV-1 transmission. RETROVIROLOGY 2006;3:52 [PubMed]
Haasnoot J, Berkhout B, RNA interference: its use as antiviral therapy. HANDB EXP PHARMACOL 2006;173 (173):117-150 [PubMed]
Hofman H, Marzi A, Gramberg T, Geier M, Pyrc K, van der Hoek L, Berkhout B, Pöhlmann S. Attachment factor and receptor engagement of SARS coronavirus and human coronavirus NL63 in: Perlman S, Holmes KV, editors. The Nidoviruses: toward control of SARS and other nidovirus diseases. S.l.: Springer; 2006., p. 219-227
Hofmann H, Marzi A, Gramberg T, Geier M, Pyrc K, van der Hoek L, Berkhout B, Pöhlmann S, Attachment factor and receptor engagement of SARS coronavirus and human coronavirus NL63. ADV EXP MED BIOL 2006;581:219-227 [PubMed]
Jeeninga RE, Jan B, van den Berg H, Berkhout B, Construction of doxycyline-dependent mini-HIV-1 variants for the development of a virotherapy against leukemias. RETROVIROLOGY 2006;3 (sept 27):64 [PubMed]
Konstantinova P, de Haan P, Das AT, Berkhout B, Hairpin-induced tRNA-mediated (HITME) recombination in HIV-1. NUCLEIC ACIDS RES 2006;34 (8):2206-2218 [PubMed]
Konstantinova P, de Vries W, Haasnoot J, ter Brake O, de Haan P, Berkhout B, Inhibition of human immunodeficiency virus type 1 by RNA interference using long-hairpin RNA. GENE THER 2006;13 (19):1403-1413 [PubMed]
Lemckert AAC, Grimbergen J, Smits S, Hartkoorn E, Holterman L, Berkhout B, Barouch DH, Vogels R, Quax P, Goudsmit J, Havenga MJE, Generation of a novel replication-incompetent adenoviral vector derived from human adenovirus type 49: manufacture on PER.C6 cells, tropism and immunogenicity. J GEN VIROL 2006;87 (10):2891-2899 [PubMed]
Lützelberger M, Reinert LS, Das AT, Berkhout B, Kjems J, A novel splice donor site in the gag-pol gene is required for HIV-1 RNA stability. J BIOL CHEM 2006;281 (27):18644-18651 [PubMed]
Ophorst OJAE, Radosević K, Havenga MJE, Pau MG, Holterman L, Berkhout B, Goudsmit J, Tsuji M, Immunogenicity and protection of a recombinant human adenovirus serotype 35-based malaria vaccine against Plasmodium yoelii in mice. INFECT IMMUN 2006;74 (1):313-320 [PubMed]
Piotrowski Y, van der Hoek L, Pyrc K, Berkhout B, Moll R, Hilgenfeld R. Nonstructural proteins of human coronavirus NL63 in: Perlman S, Holmes KV, editors. The Nidoviruses: toward control of SARS and other nidovirus diseases. S.l.: Springer; 2006., p. 97-100
Piotrowski Y, van der Hoek L, Pyrc K, Berkhout B, Moll R, Hilgenfeld R, Nonstructural proteins of human coronavirus NL63. ADV EXP MED BIOL 2006;581:97-100 [PubMed]
Pöhlmann S, Gramberg T, Wegele A, Pyrc K, van der Hoek L, Berkhout B, Hofman H. Interaction between the spike protein of human coronavirus NL63 and its cellular receptor ACE2 in: Perlman S, Holmes KV, editors. The Nidoviruses: toward control of SARS and other nidovirus diseases. S.l.: Springer; 2006., p. 281-284
Pöhlmann S, Gramberg T, Wegele A, Pyrc K, van der Hoek L, Berkhout B, Hofmann H, Interaction between the spike protein of human coronavirus NL63 and its cellular receptor ACE2. ADV EXP MED BIOL 2006;581:281-284 [PubMed]
Pyrc K, Bosch BJ, Berkhout B, Jebbink MF, Dijkman R, Rottier P, van der Hoek L, Inhibition of human coronavirus NL63 infection at early stages of the replication cycle. ANTIMICROB AGENTS CH 2006;50 (6):2000-2008 [PubMed]
Pyrc K, Dijkman R, Deng L, Jebbink MF, Ross HA, Berkhout B, van der Hoek L, Mosaic structure of human coronavirus NL63, one thousand years of evolution. J MOL BIOL 2006;364 (5):964-973 [PubMed]
Rizzi C, Crippa MP, Jeeninga RE, Berkhout B, Blasi F, Poli G, Alfano M, Pertussis toxin B-oligomer suppresses IL-6 induced HIV-1 and chemokine expression in chronically infected U1 cells via inhibition of activator protein 1. J IMMUNOL 2006;176 (2):999-1006 [PubMed]
Ruijter JM, Thygesen HH, Schoneveld OJLM, Das AT, Berkhout B, Lamers WH, Factor correction as a tool to eliminate between-session variation in replicate experiments: application to molecular biology and retrovirology. RETROVIROLOGY 2006;3 (jan 6):2 [PubMed]
Smith MK, Tusell S, Travanty EA, Berkhout B, van der Hoek L, Holmes KV. Human angiotensin-converting enzyme 2 (ACE2) is a receptor for human respiratory coronavirus NL63 in: Perlman S, Holmes KV, editors. The Nidoviruses: toward control of SARS and other nidovirus diseases. S.l.: Springer; 2006., p. 285-288
Smith MK, Tusell S, Travanty EA, Berkhout B, van der Hoek L, Holmes KV, Human angiotensin-converting enzyme 2 (ACE2) is a receptor for human respiratory coronavirus NL63. ADV EXP MED BIOL 2006;581:285-288 [PubMed]
ter Brake O, Konstantinova P, Ceylan M, Berkhout B, Silencing of HIV-1 with RNA interference: a multiple shRNA approach. MOL THER 2006;14 (6):883-892 [PubMed]
van der Hoek CM, Pyrc K, Berkhout B, Coronavirus NL63, de Hollandse nieuwe. TIJDSCHR INFECTIEZIEKTEN 2006;1 (3):108-ev
van der Hoek L, Pyrc K, Berkhout B, Human coronavirus NL63, a new respiratory virus. FEMS MICROBIOL REV 2006;30 (5):760-773 [PubMed]
van der Hoek L, Sure K, Ihorst G, Stang A, Pyrc K, Jebbink MF, Petersen G, Forster J, Berkhout B, Uberla K, Human coronavirus NL63 infection is associated with croup. ADV EXP MED BIOL 2006;581:485-491 [PubMed]
van der Hoek L, Sure K, Ihorst G, Stang A, Pyrc K, Jebbink MF, Petersen G, Forster J, Berkhout B, Überla K. Human coronavirus NL63 infection is associated with group in: Perlman S, Holmes KV, editors. The Nidoviruses: toward control of SARS and other nidovirus diseases. S.l.: Springer; 2006., p. 485-491
van Opijnen T. Virus and environment. How HIV-1 replication and evolution are driven by the host-cell environment. S.l.: s.n.; 2006. 142p. ISBN 9789073838864 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B, Sabelis MW; copromotor(s): Boerlijst MC)
van Opijnen T, Boerlijst MC, Berkhout B, Effects of random mutations in the human immunodeficiency virus type 1 transcriptional promoter on viral fitness in different host cell environments. J VIROL 2006;80 (13):6678-6685 [PubMed]
Westerhout EM, ter Brake O, Berkhout B, The virion-associated incoming HIV-1 RNA genome is not targeted by RNA interference. RETROVIROLOGY 2006;3:57 [PubMed]
Westerhout EM, Vink M, Haasnoot PCJ, Das AT, Berkhout B, A conditionally replicating HIV-based vector that stably expresses an antiviral shRNA against HIV-1 replication. MOL THER 2006;14 (2):268-275 [PubMed]
Zheng Q, Deng Y, Liu J, van der Hoek L, Berkhout B, Lu M, Core structure of S2 from the human coronavirus NL63 spike glycoprotein. BIOCHEMISTRY-US 2006;45 (51):15205-15215 [PubMed]
Zhou X, Vink M, Berkhout B, Das AT, Modification of the Tet-On regulatory system prevents the conditional-live HIV-1 variant from losing doxycycline-control. RETROVIROLOGY 2006;3:82 [PubMed]
Zhou X, Vink M, Klaver B, Berkhout B, Das AT, Optimization of the Tet-On system for regulated gene expression through viral evolution. GENE THER 2006;13 (19):1382-1390 [PubMed]
Zhou X, Vink M, Klaver B, Verhoef K, Marzio G, Das AT, Berkhout B, The genetic stability of a conditional live HIV-1 variant can be improved by mutations in the Tet-On regulatory system that restrain evolution. J BIOL CHEM 2006;281 (25):17084-17091 [PubMed]
Abbink TEM, Ooms M, Haasnoot PCJ, Berkhout B, The HIV-1 leader RNA conformational switch regulates RNA dimerization but does not regulate mRNA translation. BIOCHEMISTRY-US 2005;44 (25):9058-9066 [PubMed]
Adal M, Ayele W, Wolday D, Dagne K, Messele T, Tilahun T, Berkhout B, Mayaan S, Pollakis G, Dorigo-Zetsma W, Evidence of genetic variability of human immunodeficiency virus type 1 in plasma and cervicovaginal lavage in Ethiopian women seeking care for sexually transmitted infections. AIDS RES HUM RETROV 2005;21 (7):649-653 [PubMed]
Andersson MG, Haasnoot PCJ, Xu N, Berenjian S, Berkhout B, Akusjärvi G, Suppression of RNA interference by adenovirus virus-associated RNA. J VIROL 2005;79 (15):9556-9565 [PubMed]
Berkhout B, It's the virus, stupid--part 2. RETROVIROLOGY 2005;2 (1):78 [PubMed]
Berkhout B, RNAi Europe 2005. IDRUGS 2005;8 (12):978-981 [PubMed]
Berkhout B, de Ronde A, van der Hoek L, Aggressive HIV-1?. RETROVIROLOGY 2005;2 (1):13 [PubMed]
Das AT, Baldwin CE, Vink M, Berkhout B, Improving the safety of a conditional-live human immunodeficiency virus type 1 vaccine by controlling both gene expression and cell entry. J VIROL 2005;79 (6):3855-3858 [PubMed]
Das AT, Vink M, Berkhout B, Alternative tRNA priming of human immunodeficiency virus type 1 reverse transcription explains sequence variation in the primer-binding site that has been attributed to APOBEC3G activity. J VIROL 2005;79 (5):3179-3181 [PubMed]
Fernández A, Tawfik DS, Berkhout B, Sanders R, Kloczkowski A, Sen T, Jernigan B, Protein promiscuity: drug resistance and native functions--HIV-1 case. J BIOMOL STRUCT DYN 2005;22 (6):615-624 [PubMed]
Geskus RB, Meyer L, Hubert JB, Schuitemaker H, Berkhout B, Rouzioux C, Theodorou ID, Delfraissy JF, Prins M, Coutinho RA, Causal pathways of the effects of age and the CCR5-Delta32, CCR2-64I, and SDF-1 3'A alleles on AIDS development. JAIDS-J ACQ IMM DEF 2005;39 (3):321-326 [PubMed]
Girardi E, Sabin CA, D'Arminio Monforte A, Hogg B, Phillips AN, Gill MJ, Dabis F, Reiss P, Kirk O, Bernasconi E, Grabar S, Justice A, Staszewski S, Fätkenheuer G, Sterne JAC [Contributors: Prins JM, Bos JC, Eeftinck Schattenkerk JKM, Geerlings SE, Godfried MH, Lange JMA, van Leth FC, Lowe SH, van der Meer JTM, Nellen FJB, Pogány K, van der Poll T, Reiss P, Ruys TA, Sankatsing S, Steingrover R, van Twillert G, van der Valk M, van Vonderen MGA, Vrouenraets SME, van Vugt M, Wit FWMN, Kuijpers TW, Pajkrt D, Scherpbier HJ, Veenstra J, Danner SA, van Agtmael MA, Claessen FAP, Perenboom RM, Rijkeboer A, van Vonderen M, Back NKT, Bakker MEG, Berkhout B, Jurriaans S, Cuijpers T, Rietra PJGM, Roozendaal KJ, Pauw W, van Zanten AP, von Blomberg BME, Savelkoul P, et al -]] , Incidence of Tuberculosis among HIV-infected patients receiving highly active antiretroviral therapy in Europe and North America. CLIN INFECT DIS 2005;41 (12):1772-1782 [PubMed]
Groot F, Geijtenbeek TBH, Sanders RW, Baldwin CE, Sanchez-Hernandez M, Floris R, van Kooyk Y, de Jong EC, Berkhout B, Lactoferrin prevents dendritic cell-mediated human immunodeficiency virus type 1 transmission by blocking the DC-SIGN--gp120 interaction. J VIROL 2005;79 (5):3009-3015 [PubMed]
Hofmann H, Pyrc K, van der Hoek L, Geier M, Berkhout B, Pöhlmann S, Human coronavirus NL63 employs the severe acute respiratory syndrome coronavirus receptor for cellular entry. P NATL ACAD SCI USA 2005;102 (22):7988-7993 [PubMed]
Jeeninga RE, Jan B, van der Linden B, van den Berg H, Berkhout B, Construction of a minimal HIV-1 variant that selectively replicates in leukemic derived T-cell lines: Towards a new virotherapy approach. CANCER RES 2005;65 (8):3347-3355 [PubMed]
Kivelä PS, Krol A, Salminen MO, Geskus RB, Suni JI, Anttila VJ, Liitsola K, Zetterberg V, Miedema F, Berkhout B, Coutinho RA, Ristola MA, High plasma HIV load in the CRF01-AE outbreak among injecting drug users in Finland. SCAND J INFECT DIS 2005;37 (4):276-283 [PubMed]
Markusic D, Oude-Elferink R, Das AT, Berkhout B, Seppen J, Comparison of single regulated lentiviral vectors with rtTA expression driven by an autoregulatory loop or a constitutive promoter. NUCLEIC ACIDS RES 2005;33 (6):e63 [PubMed]
Moës E, Vijgen L, Keyaerts E, Zlateva K, Li S, Maes P, Pyrc K, Berkhout B, van der Hoek L, van Ranst M, A novel pancoronavirus RT-PCR assay: frequent detection of human coronavirus NL63 in children hospitalized with respiratory tract infections in Belgium. BMC INFECT DIS 2005;5 (1):6 [PubMed]
Naarding MA, Ludwig IS, Groot F, Berkhout B, Geijtenbeek TBH, Pollakis G, Paxton WA, Lewis X component in human milk binds DC-SIGN and inhibits HIV-1 transfer to CD4(+) T lymphocytes. J CLIN INVEST 2005;115 (11):3256-3264 [PubMed]
Nethe M, Berkhout B, van der Kuyl AC, Retroviral superinfection resistance. RETROVIROLOGY 2005;2 (52):52 [PubMed]
Pyrc K, Berkhout B, van der Hoek L. Molecular characterization of human coronavirus NL63 in: Recent Res Devel Infection & Immunity. Kerala. India: Transworld Research Network; 2005.
ter Brake O, Berkhout B, A novel approach for inhibition of HIV-1 by RNA interference: counteracting viral escape with a second generation of siRNAs. J RNAI GENE SILENCING 2005;1 (2):56-65 [PubMed]
van der Hoek L, Back N, Jebbink MF, de Ronde A, Bakker M, Jurriaans S, Reiss P, Parkin N, Berkhout B, Increased multinucleoside drug resistance and decreased replicative capacity of a human immunodeficiency virus type 1 variant with an 8-amino-acid insert in the reverse transcriptase. J VIROL 2005;79 (6):3536-3543 [PubMed]
van der Hoek L, Berkhout B, Questions concerning the new haven coronavirus. J INFECT DIS 2005;192 (2):350-351 [PubMed]
van der Hoek L, Sure K, Ihorst G, Stang A, Pyrc K, Jebbink MF, Petersen G, Forster J, Berkhout B, Uberla K, Croup is associated with the novel coronavirus NL63. PLOS MED 2005;2 (8):764 e240-770 [PubMed]
van der Kuyl AC, Kozaczynska K, van den Burg R, Zorgdrager F, Back N, Jurriaans S, Berkhout B, Reiss P, Cornelissen M, Triple HIV-1 infection. NEW ENGL J MED 2005;352 (24):2557-2559 [PubMed]
van Opijnen T, Berkhout B, The host environment drives HIV-1 fitness. REV MED VIROL 2005;15 (4):219-233 [PubMed]
Westerhout EM, Ooms M, Vink M, Das AT, Berkhout B, HIV-1 can escape from RNA interference by evolving an alternative structure in its RNA genome. NUCLEIC ACIDS RES 2005;33 (2):796-804 [PubMed]
Abbink TEM, Beerens N, Berkhout B, Forced selection of a human immunodeficiency virus type 1 variant that uses a non-self tRNA primer for reverse transcription: Involvement of viral RNA sequences and the reverse transcriptase enzyme. J VIROL 2004;78 (19):10706-10714 [PubMed]
Baldwin CE, Sanders RW, Deng Y, Jurriaans S, Lange JM, Lu M, Berkhout B, Emergence of a drug-dependent human immunodeficiency virus type 1 variant during therapy with the T20 fusion inhibitor. J VIROL 2004;78 (22):12428-12437 [PubMed]
Berkhout B, RNA interference as an antiviral approach: Targeting HIV-1. CURR OPIN MOL THER 2004;6 (2):141-145 [PubMed]
Berkhout B, de Ronde A, APOBEC3G versus reverse transcriptase in the generation of HIV-1 drug-resistance mutations. AIDS 2004;18 (13):1861-1863 [PubMed]
Berkhout B, Floris R, Recio I, Visser S, The antiviral activity of the milk protein lactoferrin against the human immunodeficiency virus type 1. BIOMETALS 2004;17 (3):291-294 [PubMed]
Bezemer D, Jurriaans S, Prins M, van der Hoek L, Prins JM, de Wolf F, Berkhout B, Coutinho R, Back NKT, Declining trend in transmission of drug-resistant HIV-1 in Amsterdam. AIDS 2004;18 (11):1571-1577 [PubMed]
Das AT, Brummelkamp TR, Westerhout EM, Vink M, Madiredjo M, Bernards R, Berkhout B, Human immunodeficiency virus type 1 escapes from RNA interference-mediated inhibition. J VIROL 2004;78 (5):2601-2605 [PubMed]
Das AT, Verhoef K, Berkhout B, A conditionally replicating virus as a novel approach toward an HIV vaccine. METHOD ENZYMOL 2004;388:359-379 [PubMed]
Das AT, Zhou X, Vink M, Klaver B, Verhoef K, Marzio G, Berkhout B, Viral evolution as a tool to improve the tetracycline-regulated gene expression system. J BIOL CHEM 2004;279 (18):18776-18782 [PubMed]
Holterman L, Vogels R, van der Vlugt R, Sieuwerts M, Grimbergen J, Kaspers J, Geelen E, van der Helm E, Lemckert A, Gillissen G, Verhaagh S, Custers J, Zuijdgeest D, Berkhout B, Bakker M, Quax P, Goudsmit J, Havenga M, Novel replication-incompetent vector derived from adenovirus type 11 (Ad11) for vaccination and gene therapy: Low seroprevalence and non-cross-reactivity with Ad5. J VIROL 2004;78 (23):13207-13215 [PubMed]
Huthoff H, Das AT, Vink M, Klaver B, Zorgdrager F, Cornelissen M, Berkhout B, A human immunodeficiency virus type 1-infected individual with low viral load harbors a virus variant that exhibits an in vitro RNA dimerization defect. J VIROL 2004;78 (9):4907-4913 [PubMed]
Huthoff H, Girard F, Wijmenga SS, Berkhout B, Evidence for a base triple in the free HIV-1 TAR RNA. RNA 2004;10 (3):412-423 [PubMed]
Kiselyeva Y, Ito Y, Lima RG, Grivel JC, Das AT, Berkhout B, Margolis LB, Depletion of CD4 T lymphocytes in human lymphoid tissue infected ex vivo with doxycycline-dependent HIV-1. VIROLOGY 2004;328 (1):1-6 [PubMed]
Kostense S, Koudstaal W, Sprangers M, Weverling GJ, Penders G, Helmus N, Vogels R, Bakker M, Berkhout B, Havenga M, Goudsmit J, Adenovirus types 5 and 35 seroprevalence in AIDS risk groups supports type 35 as a vaccine vector. AIDS 2004;18 (8):1213-1216 [PubMed]
Lemieux AM, Paré ME, Audet B, Legault E, Lefort S, Boucher N, Landry S, van Opijnen T, Berkhout B, Naghavi MH, Tremblay MJ, Barbeau B, T-cell activation leads to poor activation of the HIV-1 clade E long terminal repeat and weak association of nuclear factor-kappaB and NFAT with its enhancer region. J BIOL CHEM 2004;279 (51):52949-52960 [PubMed]
Ooms M, Huthoff H, Russell R, Liang C, Berkhout B, A riboswitch regulates RNA dimerization and packaging in human immunodeficiency virus type 1 virions. J VIROL 2004;78 (19):10814-10819 [PubMed]
Ooms M, Verhoef K, Southern E, Huthoff H, Berkhout B, Probing alternative foldings of the HIV-1 leader RNA by antisense oligonucleotide scanning arrays. NUCLEIC ACIDS RES 2004;32 (2):819-827 [PubMed]
Pyrc K, Jebbink MF, Berkhout B, van der Hoek L, Genome structure and transcriptional regulation of human coronavirus NL63. VIROL J 2004;1 (1):7 [PubMed]
Sanders RW. The HIV-1 envelope glycoproteins: folding, function and vaccine design. S.l.: s.n.; 2004. 337p. ISBN 90 5356 667 8 [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B, Moore JP; copromotor(s): )
Sanders RW, Busser E, Moore JP, Lu M, Berkhout B, Evolutionary repair of HIV type 1 gp41 with a kink in the N-terminal helix leads to restoration of the six-helix bundle structure. AIDS RES HUM RETROV 2004;20 (7):742-749 [PubMed]
Sanders RW, Dankers MM, Busser E, Caffrey M, Moore JP, Berkhout B, Evolution of the HIV-1 envelope glycoproteins with a disulfide bond between gp120 and gp41. RETROVIROLOGY 2004;1 (1):3 [PubMed]
van der Hoek L, Pyrc K, Jebbink MF, Vermeulen-Oost W, Berkhout RJM, Wolthers KC, Wertheim-van Dillen PME, Kaandorp J, Spaargaren J, Berkhout B, Identification of a new human coronavirus. NAT MED 2004;10 (4):368-373 [PubMed]
van der Kuyl AC, van den Burg R, Hoyer MJ, Gruters RA, Osterhaus ADME, Berkhout B, SIVdrl detection in captive mandrills: are mandrills infected with a third strain of simian immunodeficiency virus?. RETROVIROLOGY 2004;1 (1):36 [PubMed]
van Opijnen T, Jeeninga RE, Boerlijst MC, Pollakis GP, Zetterberg V, Salminen M, Berkhout B, Human immunodeficiency virus type 1 subtypes have a distinct long terminal repeat that determines the replication rate in a host-cell-specific manner. J VIROL 2004;78 (7):3675-3683 [PubMed]
van Opijnen T, Kamoschinski J, Jeeninga RE, Berkhout B, The human immunodeficiency virus type 1 promoter contains a CATA box instead of a TATA box for optimal transcription and replication. J VIROL 2004;78 (13):6883-6890 [PubMed]
Abbink TEM, Berkhout B, A novel long distance base-pairing interaction in human immunodeficiency virus type 1 RNA occludes the Gag start codon. J BIOL CHEM 2003;278 (13):11601-11611 [PubMed]
Andersen ES, Jeeninga RE, Damgaard CK, Berkhout B, Kjems J, Dimerization and template switching in the 5 ' untranslated region between various subtypes of human immunodeficiency virus type 1. J VIROL 2003;77 (5):3020-3030 [PubMed]
Baldwin CE, Sanders RW, Berkhout B, Inhibiting HIV-1 entry with fusion inhibitors. CURR MED CHEM 2003;10 (17):1633-1642 [PubMed]
Berkhout B, editor, Een mens is nooit alleen. Amsterdam: Vossiuspers UvA; 2003. 27p. ISBN 90 5629 295 1
Berkhout B, Floris R, Recio I, Visser S, Antibacterial effects of the milk protein lactoferrin. AGRO FOOD IND HI TEC 2003;14 (3):32-33
Berkhout B, Floris R, Recio I, Visser S, Antiviral effects of the milk protein lactoferrin. AGRO FOOD IND HI TEC 2003;14 (2):43-46
Brasey A, Lopez-Lastra M, Ohlmann T, Beerens N, Berkhout B, Darlix JL, Sonenberg N, The leader of human immunodeficiency virus type 1 genomic RNA harbors an internal ribosome entry segment that is active during the G(2)/M phase of the cell cycle. J VIROL 2003;77 (7):3939-3949 [PubMed]
Florisa R, Recio I, Berkhout B, Visser S, Antibacterial and antiviral effects of milk proteins and derivatives thereof. CURR PHARM DESIGN 2003;9 (16):1257-1275 [PubMed]
Floris R, Berkhout B, Visser S, Antiviral effects of milk proteins. NVVL 2003;2:28-35
Haasnoot PCJ, Cupac D, Berkhout B, Inhibition of virus replication by RNA interference. J BIOMED SCI 2003;10 (6 Part 1 Sp. Iss.):607-616 [PubMed]
Huthoff H. Higher order structure of the HIV-1 leader RNA: a case for RNA switches that regulate virus replication. S.l.: s.n.; 2003. 216p. [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Berkhout B; copromotor(s): )
Huthoff H, Bugala K, Barciszewski J, Berkhout B, On the importance of the primer activation signal for initiation of tRNA(lys3)-primed reverse transcription of the HIV-1 RNA genome. NUCLEIC ACIDS RES 2003;31 (17):5186-5194 [PubMed]
Kulinski T, Olejniczak M, Huthoff H, Bielecki L, Pachulska-Wieczorek K, Das AT, Berkhout B, Adamiak RW, The apical loop of the HIV-1 TAR RNA hairpin is stabilized by a cross-loop base pair. J BIOL CHEM 2003;278 (40):38892-38901 [PubMed]
Pereira CF, Paridaen JTML, Rutten K, Huigen MCDG, van de Bovenkamp M, Middel J, Beerens N, Berkhout B, Schuurman R, Marnett LJ, Verhoef J, Nottet HSLM, Aspirin-like molecules that inhibit human immunodeficiency virus 1 replication. ANTIVIR RES 2003;58 (3):253-263 [PubMed]
Beerens N. Regulation of HIV-1 reverse transcription. S.l.: s.n.; 2002. 125p. [UvA Dissertations Online] Proefschrift Universiteit van Amsterdam. (Promotor(s): Goudsmit J; copromotor(s): Berkhout B)
Beerens N, Berkhout B, Switching the in vitro tRNA usage of HIV-1 by simultaneous adaptation of the PBS and PAS. RNA 2002;8 (3):357-369 [PubMed]
Beerens N, Berkhout B, The tRNA primer activation signal in the human immunodeficiency virus type 1 genome is important for initiation and processive elongation of reverse transcription. J VIROL 2002;76 (5):2329-2339 [PubMed]
Beljaars L, Floris R, Berkhout B, Smit C, Meijer DKF, Molema G, The influence of charge clustering on the anti-HIV-1 activity and in vivo distribution of negatively charged albumins. BIOCHEM PHARMACOL 2002;63 (9):1663-1673 [PubMed]
Berkhout B, Grigoriev A, Bakker M, Lukashov VV, Codon and amino acid usage in retroviral genomes is consistent with virus-specific nucleotide pressure. AIDS RES HUM RETROV 2002;18 (2):133-141 [PubMed]
Berkhout B, Marzio G, Verhoef K, Control over HIV-1 replication by an antibiotic; a novel vaccination strategy with a drug-dependent virus. VIRUS RES 2002;82 (1-2):103-108 [PubMed]
Berkhout B, Ooms M, Beerens N, Huthoff H, Southern E, Verhoef K, In vitro evidence that the untranslated leader of the HIV-1 genome is an RNA checkpoint that regulates multiple functions through conformational changes. J BIOL CHEM 2002;277 (22):19967-19975 [PubMed]
Berkhout B, van Wamel JLB, Beljaars L, Meijer DKF, Visser S, Floris R, Characterization of the anti-HIV effects of native lactoferrin and other milk proteins and protein-derived peptides. ANTIVIR RES 2002;55 (2):341-355 [PubMed]
Berkhout B, Verhoef K, Marzio G, Klaver B, Vink M, Zhou X, Das AT, Conditional virus replication as an approach to a safe live attenuated human immunodeficiency virus vaccine. J NEUROVIROL 2002;8 (Suppl. 2):134-137 [PubMed]
Das AT, Zhou X, Vink M, Klaver B, Berkhout B, Conditional live virus as a novel approach towards a safe live attenuated HIV vaccine. EXPERT REV VACCINES 2002;1 (3):293-301 [PubMed]
Dirac AMG, Huthoff H, Kjems J, Berkhout B, Regulated HIV-2 RNA dimerization by means of alternative RNA conformations. NUCLEIC ACIDS RES 2002;30 (12):2647-2655 [PubMed]
Dirac AMG, Huthoff H, Kjems J, Berkhout B, Requirements for RNA heterodimerization of the human immunodeficiency virus type 1 (HIV-1) and HIV-2 genomes. J GEN VIROL 2002;83 (10):2533-2542 [PubMed]
Huthoff H, Berkhout B, Multiple secondary structure rearrangements during HIV-1 RNA dimerization. BIOCHEMISTRY-US 2002;41 (33):10439-10445 [PubMed]
Marzio G, Vink M, Verhoef K, de Ronde A, Berkhout B, Efficient human immunodeficiency virus replication requires a fine-tuned level of transcription. J VIROL 2002;76 (6):3084-3088 [PubMed]
Quivy V, Adam E, Collette Y, Demonte D, Chariot A, Vanhulle C, Berkhout B, Castellano R, de Launoit Y, Burny A, Piette J, Bours V, van Lint C, Synergistic activation of human immunodeficiency virus type 1 promoter activity by NF-kappaB and inhibitors of deacetylases: potential perspectives for the development of therapeutic strategies. J VIROL 2002;76 (21):11091-11103 [PubMed]
Sanders RW, de Jong EC, Baldwin CE, Schuitemaker JHN, Kapsenberg ML, Berkhout B, Differential transmission of human immunodeficiency virus type 1 by distinct subsets of effector dendritic cells. J VIROL 2002;76 (15):7812-7821 [PubMed]
Sanders RW, Vesanen M, Schuelke N, Master A, Schiffner L, Kalyanaraman R, Paluch M, Berkhout B, Maddon PJ, Olson WC, Lu M, Moore JP, Stabilization of the soluble, cleaved, trimeric form of the envelope glycoprotein complex of human immunodeficiency virus type 1. J VIROL 2002;76 (17):8875-8889 [PubMed]
Beerens N, Groot F, Berkhout B, Initiation of HIV-1 reverse transcription is regulated by a primer activation signal. J BIOL CHEM 2001;276 (33):31247-31256 [PubMed]
Berkhout B, Das AT, Beerens N, HIV-1 RNA editing, hypermutation, and error-prone reverse transcription. SCIENCE 2001;292 (5514):7 [PubMed]
Berkhout B, Vastenhouw NL, Klasens BI, Huthoff H, Structural features in the HIV-1 repeat region facilitate strand transfer during reverse transcription. RNA 2001;7 (8):1097-1114 [PubMed]
Dirac AM, Huthoff H, Kjems J, Berkhout B, The dimer initiation site hairpin mediates dimerization of the human immunodeficiency virus, type 2 RNA genome. J BIOL CHEM 2001;276 (34):32345-32352 [PubMed]
Gómez-Gonzalo M, Carretero M, Rullas J, Lara-Pezzi E, Aramburu J, Berkhout B, Alcamí J, López-Cabrera M, The hepatitis B virus X protein induces HIV-1 replication and transcription in synergy with T-cell activation signals: functional roles of NF-kappaB/NF-AT and SP1-binding sites in the HIV-1 long terminal repeat promoter. J BIOL CHEM 2001;276 (38):35435-35443 [PubMed]
Huthoff H, Berkhout B, Mutations in the TAR hairpin affect the equilibrium between alternative conformations of the HIV-1 leader RNA. NUCLEIC ACIDS RES 2001;29 (12):2594-2600 [PubMed]
Huthoff H, Berkhout B, Two alternating structures of the HIV-1 leader RNA. RNA 2001;7 (1):143-157 [PubMed]
Jeeninga RE, Keulen W, Boucher C, Sanders RW, Berkhout B, Evolution of AZT resistance in HIV-1: the 41-70 intermediate that is not observed in vivo has a replication defect. VIROLOGY 2001;283 (2):294-305 [PubMed]
Marzio G, Verhoef K, Vink M, Berkhout B, In vitro evolution of a highly replicating, doxycycline-dependent HIV for applications in vaccine studies. P NATL ACAD SCI USA 2001;98 (11):6342-6347 [PubMed]
Verhoef K, Bilodeau PS, van Wamel JL, Kjems J, Stoltzfus CM, Berkhout B, Repair of a Rev-minus human immunodeficiency virus type 1 mutant by activation of a cryptic splice site. J VIROL 2001;75 (7):3495-3500 [PubMed]
Verhoef K, Marzio G, Hillen W, Bujard H, Berkhout B, Strict control of human immunodeficiency virus type 1 replication by a genetic switch: Tet for Tat. J VIROL 2001;75 (2):979-987 [PubMed]
Beerens N, Berkhout B, In vitro studies on tRNA annealing and reverse transcription with mutant HIV-1 RNA templates. J BIOL CHEM 2000;275 (20):15474-15481 [PubMed]
Beerens N, Groot F, Berkhout B, Stabilization of the U5-leader stem in the HIV-1 RNA genome affects initiation and elongation of reverse transcription. NUCLEIC ACIDS RES 2000;28 (21):4130-4137 [PubMed]
Beerens N, Klaver B, Berkhout B, A structured RNA motif is involved in correct placement of the tRNA(3)(Lys) primer onto the human immunodeficiency virus genome. J VIROL 2000;74 (5):2227-2238 [PubMed]
Berkhout B, van Wamel JL, The leader of the HIV-1 RNA genome forms a compactly folded tertiary structure. RNA 2000;6 (2):282-295 [PubMed]
de Baar MP, de Ronde A, Berkhout B, Cornelissen M, van der Horn KH, van der Schoot AM, de Wolf F, Lukashov VV, Goudsmit J, Subtype-specific sequence variation of the HIV type 1 long terminal repeat and primer-binding site. AIDS RES HUM RETROV 2000;16 (5):499-504 [PubMed]
Jeeninga RE, Hoogenkamp M, Armand-Ugon M, de Baar M, Verhoef K, Berkhout B, Functional differences between the long terminal repeat transcriptional promoters of human immunodeficiency virus type 1 subtypes A through G. J VIROL 2000;74 (8):3740-3751 [PubMed]
Mitola S, Soldi R, Zanon I, Barra L, Gutierrez MI, Berkhout B, Giacca M, Bussolino F, Identification of specific molecular structures of human immunodeficiency virus type 1 Tat relevant for its biological effects on vascular endothelial cells. J VIROL 2000;74 (1):344-353 [PubMed]
Berkhout B, HIV-1 evolution under pressure of protease inhibitors: climbing the stairs of viral fitness. J BIOMED SCI 1999;6 (5):298-305 [PubMed]
Berkhout B, Proposed alternatives for the use of anti-HIV drugs. DRUG RESIST UPDATE 1999;2 (1):69-70 [PubMed]
Berkhout B, Jebbink M, Zsíros J, Identification of an active reverse transcriptase enzyme encoded by a human endogenous HERV-K retrovirus. J VIROL 1999;73 (3):2365-2375 [PubMed]
Berkhout B, Verhoef K, van Wamel JL, Back NK, Genetic instability of live, attenuated human immunodeficiency virus type 1 vaccine strains. J VIROL 1999;73 (2):1138-1145 [PubMed]
Das AT, Klaver B, Berkhout B, A hairpin structure in the R region of the human immunodeficiency virus type 1 RNA genome is instrumental in polyadenylation site selection. J VIROL 1999;73 (1):81-91 [PubMed]
Das AT, Land A, Braakman I, Klaver B, Berkhout B, HIV-1 evolves into a nonsyncytium-inducing virus upon prolonged culture in vitro. VIROLOGY 1999;263 (1):55-69 [PubMed]
Keulen W, van Wijk A , Schuurman R, Berkhout B, Boucher CA, Increased polymerase fidelity of lamivudine-resistant HIV-1 variants does not limit their evolutionary potential. AIDS 1999;13 (11):1343-1349 [PubMed]
Klasens BI, Huthoff HT, Das AT, Jeeninga RE, Berkhout B, The effect of template RNA structure on elongation by HIV-1 reverse transcriptase. BBA-GENE STRUCT EXPR 1999;1444 (3):355-370 [PubMed]
Klasens BI, Thiesen M, Virtanen A, Berkhout B, The ability of the HIV-1 AAUAAA signal to bind polyadenylation factors is controlled by local RNA structure. NUCLEIC ACIDS RES 1999;27 (2):446-454 [PubMed]
Oude Essink BB, Berkhout B, The fidelity of reverse transcription differs in reactions primed with RNA versus DNA primers. J BIOMED SCI 1999;6 (2):121-132 [PubMed]
Verhoef K, Berkhout B, A second-site mutation that restores replication of a Tat-defective human immunodeficiency virus. J VIROL 1999;73 (4):2781-2789 [PubMed]
Verhoef K, Sanders RW, Fontaine V, Kitajima S, Berkhout B, Evolution of the human immunodeficiency virus type 1 long terminal repeat promoter by conversion of an NF-kappaB enhancer element into a GABP binding site. J VIROL 1999;73 (2):1331-1340 [PubMed]
Zsíros J, Jebbink MF, Lukashov VV, Voûte PA, Berkhout B, Biased nucleotide composition of the genome of HERV-K related endogenous retroviruses and its evolutionary implications. J MOL EVOL 1999;48 (1):102-111 [PubMed]
Berkhout B, Das AT, Similarity of chemokines charge and the V3 domain of HIV-1 env protein. EMERG INFECT DIS 1998;4 (2):335-336 [PubMed]
Berkhout B, Das AT, van Wamel JL, The native structure of the human immunodeficiency virus type 1 RNA genome is required for the first strand transfer of reverse transcription. VIROLOGY 1998;249 (2):211-218 [PubMed]
Das AT, Klaver B, Berkhout B, The 5' and 3' TAR elements of human immunodeficiency virus exert effects at several points in the virus life cycle. J VIROL 1998;72 (11):9217-9223 [PubMed]
Das AT, van Dam AP, Klaver B, Berkhout B, Improved envelope function selected by long-term cultivation of a translation-impaired HIV-1 mutant. VIROLOGY 1998;244 (2):552-562 [PubMed]
Jeeninga RE, Huthoff HT, Gultyaev AP, Berkhout B, The mechanism of actinomycin D-mediated inhibition of HIV-1 reverse transcription. NUCLEIC ACIDS RES 1998;26 (23):5472-5479 [PubMed]
Klasens BI, Das AT, Berkhout B, Inhibition of polyadenylation by stable RNA secondary structure. NUCLEIC ACIDS RES 1998;26 (8):1870-1876 [PubMed]
van Wamel JL, Berkhout B, The first strand transfer during HIV-1 reverse transcription can occur either intramolecularly or intermolecularly. VIROLOGY 1998;244 (2):245-251 [PubMed]
Verhoef K, Bauer M, Meyerhans A, Berkhout B, On the role of the second coding exon of the HIV-1 Tat protein in virus replication and MHC class I downregulation. AIDS RES HUM RETROV 1998;14 (17):1553-1559 [PubMed]
Zsíros J, Jebbink MF, Lukashov VV, Voûte PA, Berkhout B, Evolutionary relationships within a subgroup of HERV-K-related human endogenous retroviruses. J GEN VIROL 1998;79 ( Pt 1):61-70 [PubMed]
Zsíros J, Jebbink MF, Voûte PA, Berkhout B, Identification of novel human endogenous retroviral sequences belonging to the HERV-K family. AIDS RES HUM RETROV 1998;14 (12):1093-1098 [PubMed]
Back NK, Berkhout B, Limiting deoxynucleoside triphosphate concentrations emphasize the processivity defect of lamivudine-resistant variants of human immunodeficiency virus type 1 reverse transcriptase. ANTIMICROB AGENTS CH 1997;41 (11):2484-2491 [PubMed]
Berkhout B, The primer binding site on the RNA genome of human and simian immunodeficiency viruses is flanked by an upstream hairpin structure. NUCLEIC ACIDS RES 1997;25 (20):4013-4017 [PubMed]
Berkhout B, Derksen GC, Back NK, Klaver B, de Kruif CG, Visser S, Structural and functional analysis of negatively charged milk proteins with anti-HIV activity. AIDS RES HUM RETROV 1997;13 (13):1101-1107 [PubMed]
Berkhout B, Klaver B, Das AT, Forced evolution of a regulatory RNA helix in the HIV-1 genome. NUCLEIC ACIDS RES 1997;25 (5):940-947 [PubMed]
Das AT, Klaver B, Berkhout B, Sequence variation of the human immunodeficiency virus primer-binding site suggests the use of an alternative tRNA(Lys) molecule in reverse transcription. J GEN VIROL 1997;78 (4):837-840 [PubMed]
Das AT, Klaver B, Klasens BI, van Wamel JL, Berkhout B, A conserved hairpin motif in the R-U5 region of the human immunodeficiency virus type 1 RNA genome is essential for replication. J VIROL 1997;71 (3):2346-2356 [PubMed]
Keulen W, Back NK, van Wijk A , Boucher CA, Berkhout B, Initial appearance of the 184Ile variant in lamivudine-treated patients is caused by the mutational bias of human immunodeficiency virus type 1 reverse transcriptase. J VIROL 1997;71 (4):3346-3350 [PubMed]
Keulen W, Nijhuis M, Schuurman R, Berkhout B, Boucher C, Reverse transcriptase fidelity and HIV-1 variation. SCIENCE 1997;275 (5297):229; author reply 230-229; author reply 231 [PubMed]
Oude Essink BB, Back NK, Berkhout B, Increased polymerase fidelity of the 3TC-resistant variants of HIV-1 reverse transcriptase. NUCLEIC ACIDS RES 1997;25 (16):3212-3217 [PubMed]
Verhoef K, Koper M, Berkhout B, Determination of the minimal amount of Tat activity required for human immunodeficiency virus type 1 replication. VIROLOGY 1997;237 (2):228-236 [PubMed]
Verhoef K, Tijms M, Berkhout B, Optimal Tat-mediated activation of the HIV-1 LTR promoter requires a full-length TAR RNA hairpin. NUCLEIC ACIDS RES 1997;25 (3):496-502 [PubMed]
Back NK, Nijhuis M, Keulen W, Boucher CA, Oude Essink BO, van Kuilenburg AB, van Gennip AH, Berkhout B, Reduced replication of 3TC-resistant HIV-1 variants in primary cells due to a processivity defect of the reverse transcriptase enzyme. EMBO J 1996;15 (15):4040-4049 [PubMed]
Berkhout B, Structure and function of the human immunodeficiency virus leader RNA. PROG NUCLEIC ACID RE 1996;54:1-34 [PubMed]
Berkhout B, van Wamel J, Accurate scanning of the BssHII endonuclease in search for its DNA cleavage site. J BIOL CHEM 1996;271 (4):1837-1840 [PubMed]
Berkhout B, van Wamel JL, Identification of a novel splice acceptor in the HIV-1 genome: independent expression of the cytoplasmic tail of the envelope protein. ARCH VIROL 1996;141 (5):839-855 [PubMed]
Berkhout B, van Wamel JL, Role of the DIS hairpin in replication of human immunodeficiency virus type 1. J VIROL 1996;70 (10):6723-6732 [PubMed]
Keulen W, Boucher C, Berkhout B, Nucleotide substitution patterns can predict the requirements for drug-resistance of HIV-1 proteins. ANTIVIR RES 1996;31 (1-2):45-57 [PubMed]
Oude Essink BB, Das AT, Berkhout B, HIV-1 reverse transcriptase discriminates against non-self tRNA primers. J MOL BIOL 1996;264 (2):243-254 [PubMed]
Verhoef K, Klein A, Berkhout B, Paracrine activation of the HIV-1 LTR promoter by the viral Tat protein is mechanistically similar to trans-activation within a cell. VIROLOGY 1996;225 (2):316-327 [PubMed]
Berkhout B, Klaver B, Revertants and pseudo-revertants of human immunodeficiency virus type 1 viruses mutated in the long terminal repeat promoter region. J GEN VIROL 1995;76 (4):845-853 [PubMed]
Berkhout B, Klaver B, Das AT, A conserved hairpin structure predicted for the poly(A) signal of human and simian immunodeficiency viruses. VIROLOGY 1995;207 (1):276-281 [PubMed]
Berkhout B, van Wamel J, Klaver B, Requirements for DNA strand transfer during reverse transcription in mutant HIV-1 virions. J MOL BIOL 1995;252 (1):59-69 [PubMed]
Berkhout B, van Wamel JL, Inhibition of human immunodeficiency virus expression by sense transcripts encoding the retroviral leader RNA. ANTIVIR RES 1995;26 (2):101-115 [PubMed]
Das AT, Berkhout B, Efficient extension of a misaligned tRNA-primer during replication of the HIV-1 retrovirus. NUCLEIC ACIDS RES 1995;23 (8):1319-1326 [PubMed]
Das AT, Klaver B, Berkhout B, Reduced replication of human immunodeficiency virus type 1 mutants that use reverse transcription primers other than the natural tRNA(3Lys). J VIROL 1995;69 (5):3090-3097 [PubMed]
Oude Essink BB, Das AT, Berkhout B, Structural requirements for the binding of tRNA Lys3 to reverse transcriptase of the human immunodeficiency virus type 1. J BIOL CHEM 1995;270 (40):23867-23874 [PubMed]
van der Ende A, Hopman CT, Zaat S, Essink BB, Berkhout B, Dankert J, Variable expression of class 1 outer membrane protein in Neisseria meningitidis is caused by variation in the spacing between the -10 and -35 regions of the promoter. J BACTERIOL 1995;177 (9):2475-2480 [PubMed]
van Hemert FJ, Berkhout B, The tendency of lentiviral open reading frames to become A-rich: constraints imposed by viral genome organization and cellular tRNA availability. J MOL EVOL 1995;41 (2):132-140 [PubMed]
Berkhout B, van Hemert FJ, The unusual nucleotide content of the HIV RNA genome results in a biased amino acid composition of HIV proteins. NUCLEIC ACIDS RES 1994;22 (9):1705-1711 [PubMed]
Das AT, Koken SE, Essink BB, van Wamel JL, Berkhout B, Human immunodeficiency virus uses tRNA(Lys,3) as primer for reverse transcription in HeLa-CD4+ cells. FEBS LETT 1994;341 (1):49-53 [PubMed]
Klaver B, Berkhout B, Comparison of 5' and 3' long terminal repeat promoter function in human immunodeficiency virus. J VIROL 1994;68 (6):3830-3840 [PubMed]
Klaver B, Berkhout B, Evolution of a disrupted TAR RNA hairpin structure in the HIV-1 virus. EMBO J 1994;13 (11):2650-2659 [PubMed]
Klaver B, Berkhout B, Premature strand transfer by the HIV-1 reverse transcriptase during strong-stop DNA synthesis. NUCLEIC ACIDS RES 1994;22 (2):137-144 [PubMed]
Koken SE, Greijer AE, Verhoef K, van Wamel J, Bukrinskaya AG, Berkhout B, Intracellular analysis of in vitro modified HIV Tat protein. J BIOL CHEM 1994;269 (11):8366-8375 [PubMed]
Koken SE, van Wamel J, Berkhout B, A sensitive promoter assay based on the transcriptional activator Tat of the HIV-1 virus. GENE 1994;144 (2):243-247 [PubMed]
Oude Essink BB, Berkhout B, The restriction enzyme BanI is inhibited by dcm-methylation of the GGCGCm5C site. NUCLEIC ACIDS RES 1994;22 (1):108 [PubMed]
Berkhout B, Essink BB, Schoneveld I, In vitro dimerization of HIV-2 leader RNA in the absence of PuGGAPuA motifs. FASEB J 1993;7 (1):181-187 [PubMed]
Berkhout B, Klaver B, In vivo selection of randomly mutated retroviral genomes. NUCLEIC ACIDS RES 1993;21 (22):5020-5024 [PubMed]
Berkhout B, Schoneveld I, Secondary structure of the HIV-2 leader RNA comprising the tRNA-primer binding site. NUCLEIC ACIDS RES 1993;21 (5):1171-1178 [PubMed]
Jeang KT, Berkhout B, Dropulic B, Effects of integration and replication on transcription of the HIV-1 long terminal repeat. J BIOL CHEM 1993;268 (33):24940-24949 [PubMed]
Verhoef K, Koken SE, Berkhout B, Electroporation of the HIV Tat trans-activator protein into cells. ANAL BIOCHEM 1993;210 (1):210-214 [PubMed]
Berkhout B, Structural features in TAR RNA of human and simian immunodeficiency viruses: a phylogenetic analysis. NUCLEIC ACIDS RES 1992;20 (1):27-31 [PubMed]
Berkhout B, Jeang KT, Functional roles for the TATA promoter and enhancers in basal and Tat-induced expression of the human immunodeficiency virus type 1 long terminal repeat. J VIROL 1992;66 (1):139-149 [PubMed]
Jeang KT, Berkhout B, Kinetics of HIV-1 long terminal repeat trans-activation. Use of intragenic ribozyme to assess rate-limiting steps. J BIOL CHEM 1992;267 (25):17891-17899 [PubMed]
Koken SE, van Wamel JL, Goudsmit J, Berkhout B, Geelen JL, Natural variants of the HIV-1 long terminal repeat: analysis of promoters with duplicated DNA regulatory motifs. VIROLOGY 1992;191 (2):968-972 [PubMed]
Berkhout B, Jeang KT, Detailed mutational analysis of TAR RNA: critical spacing between the bulge and loop recognition domains. NUCLEIC ACIDS RES 1991;19 (22):6169-6176 [PubMed]
Gatignol A, Buckler-White A, Berkhout B, Jeang KT, Characterization of a human TAR RNA-binding protein that activates the HIV-1 LTR. SCIENCE 1991;251 (5001):1597-1600 [PubMed]
Hall C, Berkhout B, Alarcon B, Sancho J, Wileman T, Terhorst C, Requirements for cell surface expression of the human TCR/CD3 complex in non-T cells. INT IMMUNOL 1991;3 (4):359-368 [PubMed]
Berkhout B, Gatignol A, Rabson AB, Jeang KT, TAR-independent activation of the HIV-1 LTR: evidence that tat requires specific regions of the promoter. CELL 1990;62 (4):757-767 [PubMed]
Berkhout B, Gatignol A, Silver J, Jeang KT, Efficient trans-activation by the HIV-2 Tat protein requires a duplicated TAR RNA structure. NUCLEIC ACIDS RES 1990;18 (7):1839-1846 [PubMed]
Berkhout B, Jeang KT, Down modulation of HIV-1 gene expression using a procaryotic RNA-binding protein. NUCLEIC ACIDS RES 1990;18 (23):6903-6907 [PubMed]
SenGupta DN, Berkhout B, Gatignol A, Zhou AM, Silverman RH, Direct evidence for translational regulation by leader RNA and Tat protein of human immunodeficiency virus type 1. P NATL ACAD SCI USA 1990;87 (19):7492-7496 [PubMed]
Berkhout B, Jeang KT, trans activation of human immunodeficiency virus type 1 is sequence specific for both the single-stranded bulge and loop of the trans-acting-responsive hairpin: a quantitative analysis. J VIROL 1989;63 (12):5501-5504 [PubMed]
Berkhout B, Silverman RH, Jeang KT, Tat trans-activates the human immunodeficiency virus through a nascent RNA target. CELL 1989;59 (2):273-282 [PubMed]
Alarcon B, Berkhout B, Breitmeyer J, Terhorst C, Assembly of the human T cell receptor-CD3 complex takes place in the endoplasmic reticulum and involves intermediary complexes between the CD3-gamma.delta.epsilon core and single T cell receptor alpha or beta chains. J BIOL CHEM 1988;263 (6):2953-2961 [PubMed]
Berkhout B, Alarcon B, Terhorst C, Transfection of genes encoding the T cell receptor-associated CD3 complex into COS cells results in assembly of the macromolecular structure. J BIOL CHEM 1988;263 (17):8528-8536 [PubMed]
Berkhout B, Hall C, Terhorst C, Complete cDNA sequence coding for the human T cell receptor alpha chain HPB-ALL. NUCLEIC ACIDS RES 1988;16 (11):5209 [PubMed]
Berkhout B, Schmidt BF, van Strien A, van Boom J, van Westrenen J, van Duin J, Lysis gene of bacteriophage MS2 is activated by translation termination at the overlapping coat gene. J MOL BIOL 1987;195 (3):517-524 [PubMed]
Schmidt BF, Berkhout B, Overbeek GP, van Strien A, van Duin J, Determination of the RNA secondary structure that regulates lysis gene expression in bacteriophage MS2. J MOL BIOL 1987;195 (3):505-516 [PubMed]
Berkhout B, van der Laken CJ, van Knippenberg PH, Formylmethionyl-tRNA binding to 30 S ribosomes programmed with homopolynucleotides and the effect of translational initiation factor 3. BBA-GENE STRUCT EXPR 1986;866 (2-3):144-153 [PubMed]
Berkhout B, de Smit MH, Spanjaard RA, Blom T, van Duin J, The amino terminal half of the MS2-coded lysis protein is dispensable for function: implications for our understanding of coding region overlaps. EMBO J 1985;4 (12):3315-3320 [PubMed]
Berkhout B, Kastelein RA, van Duin J, Translational interference at overlapping reading frames in prokaryotic messenger RNA. GENE 1985;37 (1-3):171-179 [PubMed]
Berkhout B, van Duin J, Mechanism of translational coupling between coat protein and replicase genes of RNA bacteriophage MS2. NUCLEIC ACIDS RES 1985;13 (19):6955-6967 [PubMed]
Kastelein RA, Berkhout B, Overbeek GP, van Duin J, Effect of the sequences upstream from the ribosome-binding site on the yield of protein from the cloned gene for phage MS2 coat protein. GENE 1983;23 (3):245-254 [PubMed]
Kastelein RA, Berkhout B, van Duin J, Opening the closed ribosome-binding site of the lysis cistron of bacteriophage MS2. NATURE 1983;305 (5936):741-743 [PubMed]
van der Laken K, Bakker-Steeneveld H, Berkhout B, van Knippenberg PH, The role of the codon and the initiation factor IF-2 in the selection of N-blocked aminoacyl-tRNA for initiation. EUR J BIOCHEM 1980;104 (1):19-33 [PubMed]
Key publications

Liu YP, Schopman NCT, Berkhout B, Dicer-independent processing of short hairpin RNAs. NUCLEIC ACIDS RES 2013;41 (6):3723-3733 [PubMed]
Herrera-Carrillo E, Liu YP, Berkhout B, The impact of unprotected T cells in RNAi-based gene therapy for HIV-AIDS. MOL THER 2014;22 (3):596-606 [PubMed]
Harwig A, Das AT, Berkhout B, Retroviral microRNAs. CURR OPIN VIROL 2014;7:47-54 [PubMed]
Pasternak AO, Berkhout B, HIV Reservoir: Finding the Right Needles in a Needlestack. CELL HOST MICROBE 2016;20 (3):280-282 [PubMed]
Herrera-Carrillo E, Gao ZL, Harwig A, Heemskerk MT, Berkhout B, The influence of the 5΄-terminal nucleotide on AgoshRNA activity and biogenesis: importance of the polymerase III transcription initiation site. NUCLEIC ACIDS RES 2017;45 (7):4036-4050 [PubMed]


All Publications

Curriculum Vitae
Personal data

Name: Benjamin Berkhout

Date of Birth: June 18, 1958

Nationality: Dutch

Sex: male

Office address: Laboratory of Experimental Virology
Department of Medical Microbiology
Center for Infection and Immunity Amsterdam (CINIMA)
Academic Medical Center of the University of Amsterdam
Meibergdreef 15, 1105 AZ Amsterdam, the Netherlands
tel. +31-20-5664822
fax +31-20-6916531
b.berkhout@amc.uva.nl

Education

1979 B.Sc. University of Leiden (Chemistry)

1981 M.Sc. University of Leiden (Chemistry, Biochemistry,
Organic Chemistry and Bio-Inorganic Chemistry)
judicium: cum laude

1986 PhD University of Leiden (Molecular Biology and Biochemistry)
Thesis: Translational control mechanisms in bacteriophage MS2

Research and Professional Experience

1977-1981 Teaching Fellow, Department of Biochemistry
University of Leiden

1981-1986 Scientific Officer, Department of Biochemistry
University of Leiden

1986-1988 Research Fellow in Pathology, Harvard Medical School
Dana-Farber Cancer Institute, Boston, MA, USA

1988-1991 Visiting Research Associate, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda MD, USA

1991-1993 Assistant Professor, Department of Virology
Academic Medical Center, University of Amsterdam

1994-2002 Associate Professor, Department of Human Retrovirology
Academic Medical Center, University of Amsterdam

2002-2006 Head a.i. of the Department of Human Retrovirology
Academic Medical Center, University of Amsterdam

2002-present Professor of Human Retrovirology
Academic Medical Center, University of Amsterdam

2006-present Head of the Laboratory of Experimental Virology
Academic Medical Center, University of Amsterdam

Discoveries, contributions to science

- Novel mechanism for translational coupling in E. coli

- HIV-1 TAR RNA as transcriptional enhancer

- Virus competition assays to monitor fitness

- Concept of genetic barrier in evolution of drug-resistance

- HIV-1 fitness loss due to drug-resistance mutations

- Description of A-rich HIV-1 genome and G-to-A hypermutation

- Modulation of polyadenylation by RNA structure

- First description of a drug-dependent clinical HIV-1 variant (T20)

- Biological differences among HIV-1 subtypes due to LTR promoter variation

- Mechanism of initiation of reverse transcription (tRNA primer selection, PAS motif)

- Identification of new HIV-1 RNA motifs (polyA hairpin, PAS, AUG-U5 interaction)

- HIV-1 RNA functions regulated by a riboswitch mechanism

- Forced evolution approach to study RNA structure, drug-resistance etc

- RNAi gene therapy as antiviral approach

- RNAi-resistance through target RNA structure motifs

- Construction of drug-dependent HIV-1 vaccine candidate (dox)

- Improvement of the Tet-system for inducible gene expression

- Virus discovery, the human coronavirus HCoV-NL63

- First selection of T1249-resistant HIV-1 viruses

- Regulation of splicing by RNA structure

- New tRNA-mediated HIV-1 recombination mechanism

- HIV-1 RNA circularization

- Implementation of the humanized mouse for safety testing of lentiviral RNAi gene therapy

- Identification of a non-canonical Dicer-independent shRNA processing pathway
- Description of the novel AgoshRNA design

- Regulated expression of the SIV Rev and Env proteins via translational control

- Novel HIV-1 latency mechanism via cellular antisense transcription

- Description of HIV-1 latency in activated T cells

- Natural way to purge the HIV reservoir in activated T cells by dendritic cells

Publications:
> 469 peer-reviewed articles
> 13,700 citations
ISI H-index 61

Research programmes

Virology

Mechanism of HIV-1 gene expression.  We study the mechanism of LTR-mediated viral transcription. Appropriate in vitro and in vivo assay systems have been developed for these studies, including the evolutionary analysis of mutated viruses. We analyzed the LTR promoter activity for the different HIV-1 subtypes. The mechanism of transcriptional activation by the viral Tat protein through the TAR hairpin motif has been addressed at the molecular level by different approaches. More recently, we have initiated studies on the mechanism of proviral latency. Other aspects of viral gene expression, such as the regulation of mRNA splicing and polyadenylation are also being addressed. 

HIV-1 RNA structure and function. Studies have focused on the untranslated leader that contains many replication signals, e.g. for RNA dimerization and RNA packaging. A riboswitch model was proposed to differentiate between the gene expression (translation) and virus-specific activities (virion packaging) of the HIV-1 RNA genome. We reported that the 9kb HIV-1 RNA circularizes by means of a 5'-3' basepairing interaction. We also have a special interest in the nucleotide-composition and codon usage of retroviruses. We also study the initiation process of HIV-1 reverse transcription, which requires the interaction between the primer-binding site (PBS) and the cellular tRNAlys3 primer and the Reverse Transcriptase enzyme.

Virus evolution and drug-resistance.  We study virus evolution in diverse settings, e.g. the selection of drug-resistant virus variants and the selection of revertant viruses from replication-impaired HIV-1 mutants. Drug resistance was studied for the RT inhibitor 3TC (lamivudine) and we describede for the first time a fitness loss of the mutated RT enzyme and virus. Other studies focus on the mechanism that provides resistance to the entry inhibitor T20 (Fuzeon), we e.g. reported the first drug-dependent HIV-1 variant and RNAi-resistance (see below).

RNA interference as antiviral therapy.  HIV-1 replication in cell culture can be effectively blocked by intracellular expresion of a single shRNA inhibitor that induces RNA interference (RNAi) against HIV-1 or a critical cellular co-factor. However, the virus can escape as was demonstrated in massive evolution studies that described different escape routes. We have succesfully blocked viral escape by a combinatorial RNAi approach that is now being tested in a humanized mouse model as pre-clinical test system. A lentivirus-mediated gene therapy is being developed based on this system. Basic aspects of the virus-RNAi interaction, e.g. the presence of viral RNAi suppressors, are also being studied. We recently described a novel Dicer-independent RNAi pathway.

Novel vaccine strategies.  Live-attenuated virus vaccines have shown to be much more effective than any other AIDS vaccine approach. However, the attenuated virus may revert over time to a virulent and pathogenic phenotype, and live attenuated HIV vaccines are therefore considered to be unsafe. To improve the safety, we have constructed a conditional-live virus in which the doxycycline (dox)-controlled gene expression system (Tet-On system) was incorporated. Upon vaccination, replication of this virus can be limited to the time required to induce a protective immune response by transient administration of dox, which will prevent the evolution of a more pathogenic virus. Promising results have recently been obtained in the SIV-macaque model. Spin-off is formed by the evolution of imporved Tet-On systems (collaboration with dr. A.T. Das).

Patient related virus studies. Based on the availability of relevant patient samples, e.g. as member of the Amsterdam Cohort Studies on HIV-AIDS, we are performing several clinically relevant virology studies. This includes the description of HIV-1 superinfections, novel HIV-1 subtype variants, HBV double infections, and the development of ultra-sensitive intracellular HIV-1 RNA detection assays. 

Faculty
Prof. dr. B. Berkhout
Dr. M.I. Cornelissen
Dr. A.C. van der Kuyl

Postdocs
Dr. F. van Hemert
Dr. E. Herrera Carrillo
Dr. T. van Montfort
Dr. A.O. Pasternak PhD
Dr. Y.U. van der Velden
Dr. J.C. Villaudy PhD

PhD Students
P.J.M. Brouwer
L. Falk
Z. Gao
M.M. van Haaren
C.M. Kinsella MSc
I. del Moral Sanchez
R.J. Overmars
A. Schorcht MSc
G.S. Steba
A. Torrents de la Peña
G. Wang MSc

Others
E. Frankin
G.P.M. Klaver
E. Siteur-Van Rijnstra
M. Vink
N. Zhao
F.K. Zorgdrager

Other research related activities
  • Membership of editorial board / Editorship, JOURNAL OF BIOMEDICAL SCIENCE
  • Membership of editorial board / Editorship, RETROVIROLOGY
  • Membership of editorial board / Editorship, JOURNAL OF GENERAL VIROLOGY
  • Membership of editorial board / Editorship, RNA BIOLOGY
  • Membership of editorial board / Editorship, NUCLEIC ACIDS RESEARCH
  • Membership of editorial board / Editorship, JOURNAL OF VIROLOGY
  • Membership of editorial board / Editorship, VIROLOGY JOURNAL
  • Membership of editorial board / Editorship, JOURNAL OF BIOLOGICAL CHEMISTRY
  • Membership of editorial board / Editorship, VIRUS RESEARCH
  • Membership of editorial board / Editorship, JOURNAL OF RNAI AND GENE SILENCING
  • Membership of editorial board / Editorship, ANTIVIRAL RESEARCH
  • Membership of editorial board / Editorship, JOURNAL OF THE FORMOSAN MEDICAL ASSOCIATION
  • Membership of editorial board / Editorship, MOLECULAR THERAPY
  • Membership of editorial board / Editorship, OLIGONUCLEOTIDES
  • Membership of editorial board / Editorship, WORLD JOURNAL OF VIROLOGY
  • Membership of editorial board / Editorship, MOLECULAR THERAPY-NUCLEIC ACIDS
  • Membership of advisory board / Consultant, Biomedical Primate Research Centre
  • Board of directors / Trustees / Supervisory board, European Society for Virology
  • Membership of medical or scientific committee, KNAW (Royal Netherlands Academy of Science), Beijerinck Virologie Fonds
  • Membership of medical or scientific committee, Research Grants Council, Hong Kong, Biology and Medicine panel
  • Membership of medical or scientific committee, FWO, Belgium, Microbiology and Immunology panel
  • Membership of medical or scientific committee, Academy of Finland, Helsinki, BIO panel
  • Membership of medical or scientific committee, Danish Council for Independent Research (DFF), Copenhagen, Biochemistry, Molecular Biology panel
  • Member of the Microbiology, Immunology and Infection panel, French National Research Agency (ANR)
  • Membership of medical or scientific committee, International AIDS Society (IAS), International working group to develop a Global Scientific Strategy "Towards an HIV Cure"
  • Appointed expert for court cases dealing with virus (HIV, HBV) transmission, Ministry of Health, Welfare and Sport
Current research funding
  • AMC
  • Europese Unie
  • NWO
  • Rijksdienst voor Ondernemend Nederland
  • Stichting Aidsfonds/SOA AIDS Nederland
  • ZonMw