G.K.J. Hooijer MSc publications

2020

• Bailey Matthew H., Meyerson William U., Dursi Lewis Jonathan, Wang Liang-Bo, Dong Guanlan, Liang Wen-Wei, Weerasinghe Amila, Li Shantao, Li Yize, Kelso Sean, Akbani Rehan, Anur Pavana, Bailey Matthew H., Buchanan Alex, Chiotti Kami, Covington Kyle, Creason Allison, Ding Li, Ellrott Kyle, Fan Yu, Foltz Steven, Getz Gad, Hale Walker, Haussler David, Hess Julian M., Hutter Carolyn M., Kandoth Cyriac, Kasaian Katayoon, Kasapi Melpomeni, Larson Dave, Leshchiner Ignaty, Letaw John, Ma Singer, McLellan Michael D., Men Yifei, Mills Gordon B., Niu Beifang, Peto Myron, Radenbaugh Amie, Reynolds Sheila M., Saksena Gordon, Sofia Heidi, Stewart Chip, Struck Adam J., Stuart Joshua M., Wang Wenyi, Hooijer Gerrit K., Kool Marcel, Liu Jia, van de Vijver Marc J. Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples (Nature Communications, (2020), 11, 1, (4748), 10.1038/s41467-020-18151-y) Nature communications 2020;11 (1) [PubMed]
• Hartl Leonie, Duitman Janwillem, Aberson Hella L., Chen Kan, Dijk Frederike, Roelofs Joris J. T. H., Dings Mark P. G., Hooijer Gerrit K. J., Hernanda Pratika Y., Pan Qiunwei, Busch Olivier R., Besselink Marc G. H., Boerman Ton, Peppelenbosch Maikel P., Bijlsma Maarten F., Spek C. Arnold Ccaat/enhancer-binding protein delta (C/ebpδ): A previously unrecognized tumor suppressor that limits the oncogenic potential of pancreatic ductal adenocarcinoma cells Cancers 2020;12 (9):1-21 [PubMed]
• de Krijger Manon, Visseren Thijmen, Wildenberg Manon E., Hooijer Gerrit K. J., Verstegen Monique M. A., van der Laan Luc J. W., de Jonge Wouter J., Verheij Joanne, Ponsioen Cyriel Y. Characterization of gut-homing molecules in non-endstage livers of patients with primary sclerosing cholangitis and inflammatory bowel disease Journal of Translational Autoimmunity 2020;3 [PubMed]
• Franken L. C., Vuijk F. A., Soer E. C., Roos E., Erdmann J. I., Hooijer G. K. J., Vahrmeijer A. L., Gambhir S. S., van Gulik T. M., Sarasqueta A. Farina, Verheij J., Swijnenburg R. J. Expression of integrin ανβ6 differentiates perihilar cholangiocarcinoma (PHC) from benign disease mimicking PHC European journal of surgical oncology 2020 [PubMed]
• Tekin Cansu, Aberson Hella L., Waasdorp Cynthia, Hooijer Gerrit K. J., de Boer Onno J., Dijk Frederike, Bijlsma Maarten F., Spek C. Arnold Macrophage-secreted MMP9 induces mesenchymal transition in pancreatic cancer cells via PAR1 activation Cellular oncology 2020;43 (6):1161-1174 [PubMed]
• Campbell Peter J., Getz Gad, Korbel Jan O., Stuart Joshua M., Jennings Jennifer L., Stein Lincoln D., Perry Marc D., Nahal-Bose Hardeep K., Ouellette B. F. Francis, Li Constance H., Rheinbay Esther, Nielsen G. Petur, Sgroi Dennis C., Wu Chin-Lee, Faquin William C., Deshpande Vikram, Boutros Paul C., Lazar Alexander J., Hoadley Katherine A., Louis David N., Dursi L. Jonathan, Yung Christina K., Bailey Matthew H., Saksena Gordon, Raine Keiran M., Buchhalter Ivo, Kleinheinz Kortine, Schlesner Matthias, Zhang Junjun, Wang Wenyi, Wheeler David A., Ding Li, Simpson Jared T., O’Connor Brian D., Yakneen Sergei, Ellrott Kyle, Miyoshi Naoki, Butler Adam P., Royo Romina, Shorser Solomon I., Vazquez Miguel, Rausch Tobias, Liu Jia, Hooijer Gerrit K., van de Vijver Marc J., Kool Marcel, Liu Jia, Hooijer Gerrit K., van de Vijver Marc J., Kool Marcel Pan-cancer analysis of whole genomes Nature 2020;578 (7793):82-93 [PubMed]
• Klaassen Remy, Steins Anne, Gurney-Champion Oliver J., Bijlsma Maarten F., van Tienhoven Geertjan, Engelbrecht Marc R. W., van Eijck Casper H. J., Suker Mustafa, Wilmink Johanna W., Besselink Marc G., Busch Olivier R., de Boer Onno J., van de Vijver Marc J., Hooijer Gerrit K. J., Verheij Joanne, Stoker Jaap, Nederveen Aart J., van Laarhoven Hanneke W. M. Pathological validation and prognostic potential of quantitative MRI in the characterization of pancreas cancer: preliminary experience Molecular oncology 2020;14 (9):2176-2189 [PubMed]
• Bailey Matthew H., Meyerson William U., Dursi Lewis Jonathan, Wang Liang-Bo, Dong Guanlan, Liang Wen-Wei, Weerasinghe Amila, Li Shantao, Kelso Sean, Akbani Rehan, Anur Pavana, Bailey Matthew H., Buchanan Alex, Chiotti Kami, Covington Kyle, Creason Allison, Ding Li, Ellrott Kyle, Fan Yu, Foltz Steven, Getz Gad, Hale Walker, Haussler David, Hess Julian M., Hutter Carolyn M., Kandoth Cyriac, Kasaian Katayoon, Kasapi Melpomeni, Larson Dave, Leshchiner Ignaty, Letaw John, Ma Singer, McLellan Michael D., Men Yifei, Mills Gordon B., Niu Beifang, Peto Myron, Radenbaugh Amie, Reynolds Sheila M., Saksena Gordon, Sofia Heidi, Stewart Chip, Struck Adam J., Stuart Joshua M., Wang Wenyi, Weinstein John N., Hooijer Gerrit K., Kool Marcel, Liu Jia, van de Vijver Marc J. Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples Nature communications 2020;11 (1) [PubMed]
• Li Constance H., Prokopec Stephenie D., Sun Ren X., Yousif Fouad, Schmitz Nathaniel, Al-Shahrour Fatima, Atwal Gurnit, Bailey Peter J., Biankin Andrew V., Boutros Paul C., Campbell Peter J., Chang David K., Cooke Susanna L., Deshpande Vikram, Faltas Bishoy M., Faquin William C., Garraway Levi, Getz Gad, Grimmond Sean M., Haider Syed, Hoadley Katherine A., Jiao Wei, Kaiser Vera B., Karlić Rosa, Kato Mamoru, Kübler Kirsten, Lazar Alexander J., Li Constance H., Louis David N., Margolin Adam, Martin Sancha, Nahal-Bose Hardeep K., Nielsen G. Petur, Nik-Zainal Serena, Omberg Larsson, P’ng Christine, Perry Marc D., Polak Paz, Rheinbay Esther, Rubin Mark A., Semple Colin A., Sgroi Dennis C., Shibata Tatsuhiro, Siebert Reiner, Smith Jaclyn, Stein Lincoln D., Hooijer Gerrit K., Kool Marcel, Liu Jia, van de Vijver Marc J. Sex differences in oncogenic mutational processes Nature communications 2020;11 (1) [PubMed]
• Dijk Frederike, Veenstra Veronique L., Soer Eline C., Dings Mark P. G., Zhao Lan, Halfwerk Johannes B., Hooijer Gerrit K., Damhofer Helene, Marzano Marco, Steins Anne, Waasdorp Cynthia, Busch Olivier R., Besselink Marc G., Tol Johanna A., Welling Lieke, van Rijssen Lennart B., Klompmaker Sjors, Wilmink Hanneke W., van Laarhoven Hanneke W., Medema Jan Paul, Vermeulen Louis, van Hooff Sander R., Koster Jan, Verheij Joanne, van de Vijver Marc J., Wang Xin, Bijlsma Maarten F. Unsupervised class discovery in pancreatic ductal adenocarcinoma reveals cell-intrinsic mesenchymal features and high concordance between existing classification systems Scientific reports 2020;10 (1):337 [PubMed]

2019

• van Groningen Tim, Akogul Nurdan, Westerhout Ellen M., Chan Alvin, Hasselt Nancy E., Zwijnenburg Danny A., Broekmans Marloes, Stroeken Peter, Haneveld Franciska, Hooijer Gerrit K. J., Savci-Heijink C. Dilara, Lakeman Arjan, Volckmann Richard, van Sluis Peter, Valentijn Linda J., Koster Jan, Versteeg Rogier, van Nes Johan A NOTCH feed-forward loop drives reprogramming from adrenergic to mesenchymal state in neuroblastoma Nature communications 2019;10 (1):1530 [PubMed]
• Verly I. R. N., Leen R., Meinsma J. R., Hooijer G. K. J., Savci-Heijink C. D., van Nes J., Broekmans M., Wanders R. J. A., van Kuilenburg A. B. P., Tytgat G. A. M. Catecholamine excretion profiles identify clinical subgroups of neuroblastoma patients European journal of cancer (Oxford, England 2019;111:21-29 [PubMed]
• Nederlof Iris, de Bortoli Davide, Bareche Yacine, Nguyen Bastien, de Maaker Michiel, Hooijer Gerrit K. J., Buisseret Laurence, Kok Marleen, Smid Marcel, van den Eynden Gert G. G. M., Brinkman Arie B., Hudecek Jan, Koster Jan, Sotiriou Christos, Larsimont Denis, Martens John W. M., van de Vijver Marc J., Horlings Hugo M., Salgado Roberto, Biganzoli Elia, Desmedt Christine Comprehensive evaluation of methods to assess overall and cell-specific immune infiltrates in breast cancer Breast cancer research 2019;21 (1) [PubMed]
• Nik-Zainal Serena, Davies Helen, Staaf Johan, Ramakrishna Manasa, Glodzik Dominik, Zou Xueqing, Martincorena Inigo, Alexandrov Ludmil B., Martin Sancha, Wedge David C., van Loo Peter, Ju Young Seok, Smid Marcel, Brinkman Arie B., Morganella Sandro, Aure Miriam R., Lingjærde Ole Christian, Langerød Anita, Ringnér Markus, Ahn Sung-Min, Boyault Sandrine, Brock Jane E., Broeks Annegien, Butler Adam, Desmedt Christine, Dirix Luc, Dronov Serge, Fatima Aquila, Foekens John A., Gerstung Moritz, Hooijer Gerrit K. J., Jang Se Jin, Jones David R., Kim Hyung-Yong, King Tari A., Krishnamurthy Savitri, Lee Hee Jin, Lee Jeong-Yeon, Li Yilong, McLaren Stuart, Menzies Andrew, Mustonen Ville, O’Meara Sarah, Pauporté Iris, Pivot Xavier, Purdie Colin A., Raine Keiran, Ramakrishnan Kamna, Rodríguez-González F. Germán, Romieu Gilles, Sieuwerts Anieta M., Simpson Peter T., Shepherd Rebecca, Stebbings Lucy, Stefansson Olafur A., Teague Jon, Tommasi Stefania, Treilleux Isabelle, van den Eynden Gert G., Vermeulen Peter, Vincent-Salomon Anne, Yates Lucy, Caldas Carlos, van’t Veer Laura, Tutt Andrew, Knappskog Stian, Tan Benita Kiat Tee, Jonkers Jos, Borg Åke, Ueno Naoto T., Sotiriou Christos, Viari Alain, Futreal P. Andrew, Campbell Peter J., Span Paul N., van Laere Steven, Lakhani Sunil R., Eyfjord Jorunn E., Thompson Alastair M., Birney Ewan, Stunnenberg Hendrik G., van de Vijver Marc J., Martens John W. M., Børresen-Dale Anne-Lise, Richardson Andrea L., Kong Gu, Thomas Gilles, Stratton Michael R. Correction to: Landscape of somatic mutations in 560 breast cancer whole-genome sequences (Nature, (2016), 534, 7605, (47-54), 10.1038/nature17676) Nature 2019;566 (7742):E1 [PubMed]
• Savci-Heijink C. D., Halfwerk H., Hooijer G. K. J., Koster J., Horlings H. M., Meijer S. L., van de Vijver M. J. Epithelial-to-mesenchymal transition status of primary breast carcinomas and its correlation with metastatic behavior Breast cancer research and treatment 2019;174 (3):649-659 [PubMed]
• Butter Rogier, Hart't Nils A., Hooijer Gerrit K. J., Monkhorst Kim, Speel Ernst-Jan, Theunissen Paul, Thunnissen Erik, von der Thüsen Jan H., Timens Wim, van de Vijver Marc J. Multicentre study on the consistency of PD-L1 immunohistochemistry as predictive test for immunotherapy in non-small cell lung cancer Journal of clinical pathology 2019 [PubMed]
• Schokker Sandor, van der Woude Stephanie O., van Kleef Jessy Joy, van Zoen Daan J., van Oijen Martijn G. H., Mearadji Banafsche, Beenen Ludo F. M., Stroes Charlotte I., Waasdorp Cynthia, Jibodh R. Aarti, Creemers Aafke, Meijer Sybren L., Hooijer Gerrit K. J., Punt Cornelis J. A., Bijlsma Maarten F., van Laarhoven Hanneke W. M. Phase I Dose escalation study with expansion cohort of the addition of nab-paclitaxel to capecitabine and oxaliplatin (CapOx) as first-line treatment of metastatic esophagogastric adenocarcinoma (ACTION study) Cancers 2019;11 (6) [PubMed]
• Ebbing Eva A., van der Zalm Amber P., Steins Anne, Creemers Aafke, Hermsen Simone, Rentenaar Rosa, Klein Michelle, Waasdorp Cynthia, Hooijer Gerrit K. J., Meijer Sybren L., Krishnadath Kausilia K., Punt Cornelis J. A., van Berge Henegouwen Mark I., Gisbertz Suzanne S., van Delden Otto M., Hulshof Maarten C. C. M., Medema Jan Paul, van Laarhoven Hanneke W. M., Bijlsma Maarten F. Stromal-derived interleukin 6 drives epithelial-to-mesenchymal transition and therapy resistance in esophageal adenocarcinoma Proceedings of the National Academy of Sciences of the United States of America 2019;116 (6):2237-2242 [PubMed]

2018

• Sobral-Leite Marcelo, van de Vijver Koen, Michaut Magali, van der Linden Rianne, Hooijer Gerrit K. J., Horlings Hugo M., Severson Tesa M., Mulligan Anna Marie, Weerasooriya Nayana, Sanders Joyce, Glas Annuska M., Wehkamp Diederik, Mittempergher Lorenza, Kersten Kelly, Cimino-Mathews Ashley, Peters Dennis, Hooijberg Erik, Broeks Annegien, van de Vijver Marc J., Bernards Rene, Andrulis Irene L., Kok Marleen, de Visser Karin E., Schmidt Marjanka K. Assessment of PD-L1 expression across breast cancer molecular subtypes, in relation to mutation rate, BRCA1-like status, tumor-infiltrating immune cells and survival Oncoimmunology 2018;7 (12) [PubMed]
• Creemers Aafke, Ebbing Eva A., Hooijer Gerrit K. J., Stap Lisanne, Jibodh-Mulder Rajni A., Gisbertz Susanne S., Henegouwen Mark I. van Berge, van Montfoort Maurits L., Hulshof Maarten C. C. M., Krishnadath Kausilia K., van Oijen Martijn G. H., Bijlsma Maarten F., Meijer Sybren L., van Laarhoven Hanneke W. M. The dynamics of HER2 status in esophageal adenocarcinoma Oncotarget 2018;9 (42):26787-26799 [PubMed]

2017

• Hato Stanleyson V., Figdor Carl G., Takahashi Susumu, Pen Anja E., Halilovic Altuna, Bol Kalijn F., Vasaturo Angela, Inoue Yukie, de Haas Nienke, Verweij Dagmar, van Herpen Carla M. L., Kaanders Johannes H., van Krieken Johan H. J. M., van Laarhoven Hanneke W. M., Hooijer Gerrit K. J., Punt Cornelis J. A., Asai Akira, de Vries I. Jolanda M., Joost Lesterhuis W. Direct inhibition of STAT signaling by platinum drugs contributes to their anti-cancer activity Oncotarget 2017;8 (33):54434-54443 [PubMed]
• Creemers A., ter Veer E., de Waal L., Lodder P., Hooijer G. K. J., van Grieken N. C. T., Bijlsma M. F., Meijer S. L., van Oijen M. G. H., van Laarhoven H. W. M. Discordance in HER2 Status in Gastro-esophageal Adenocarcinomas: A Systematic Review and Meta-analysis Scientific reports 2017;7 (1):3135 [PubMed]
• Trinh Anne, Trumpi Kari, de Sousa E Melo Felipe, Wang Xin, de Jong Joan H., Fessler Evelyn, Kuppen Peter J. K., Reimers Marlies S., Swets Marloes, Koopman Miriam, Nagtegaal Iris D., Jansen Marnix, Hooijer Gerrit K. J., Offerhaus George J. A., Kranenburg Onno, Punt Cornelis J., Medema Jan Paul, Markowetz Florian, Vermeulen Louis Practical and Robust Identification of Molecular Subtypes in Colorectal Cancer by Immunohistochemistry Clinical cancer research 2017;23 (2):387-398 [PubMed]

2016

• Creemers A., Ebbing E. A., Hooijer G. K. J., Jibodh-Mulder A. R. A., Gisbertz S. S., van Oijen M. G. H., Henegouwen M. Ivan Berge, Bijlsma M. F., Meijer S. L., van Laarhoven H. W. M. Dynamics of the HER2 receptor in esophageal adenocarcinoma: New opportunities for targeted therapy Annals of oncology 2016;27:vi227
• Nik-Zainal Serena, Davies Helen, Staaf Johan, Ramakrishna Manasa, Glodzik Dominik, Zou Xueqing, Martincorena Inigo, Alexandrov Ludmil B., Martin Sancha, Wedge David C., van Loo Peter, Ju Young Seok, Smid Marcel, Brinkman Arie B., Morganella Sandro, Aure Miriam R., Lingjærde Ole Christian, Langerød Anita, Ringnér Markus, Ahn Sung-Min, Boyault Sandrine, Brock Jane E., Broeks Annegien, Butler Adam, Desmedt Christine, Dirix Luc, Dronov Serge, Fatima Aquila, Foekens John A., Gerstung Moritz, Hooijer Gerrit K. J., Jang Se Jin, Jones David R., Kim Hyung-Yong, King Tari A., Krishnamurthy Savitri, Lee Hee Jin, Lee Jeong-Yeon, Li Yilong, McLaren Stuart, Menzies Andrew, Mustonen Ville, O'Meara Sarah, Pauporté Iris, Pivot Xavier, Purdie Colin A., Raine Keiran, Ramakrishnan Kamna, Rodríguez-González F. Germán, Romieu Gilles, Sieuwerts Anieta M., Simpson Peter T., Shepherd Rebecca, Stebbings Lucy, Stefansson Olafur A., Teague Jon, Tommasi Stefania, Treilleux Isabelle, van den Eynden Gert G., Vermeulen Peter, Vincent-Salomon Anne, Yates Lucy, Caldas Carlos, van't Veer Laura, Tutt Andrew, Knappskog Stian, Tan Benita Kiat Tee, Jonkers Jos, Borg Åke, Ueno Naoto T., Sotiriou Christos, Viari Alain, Futreal P. Andrew, Campbell Peter J., Span Paul N., van Laere Steven, Lakhani Sunil R., Eyfjord Jorunn E., Thompson Alastair M., Birney Ewan, Stunnenberg Hendrik G., van de Vijver Marc J., Martens John W. M., Børresen-Dale Anne-Lise, Richardson Andrea L., Kong Gu, Thomas Gilles, Stratton Michael R. Landscape of somatic mutations in 560 breast cancer whole-genome sequences Nature 2016;534 (7605):47-+ [PubMed]
• McConechy Melissa K., Färkkilä Anniina, Horlings Hugo M., Talhouk Aline, Unkila-Kallio Leila, van Meurs Hannah S., Yang Winnie, Rozenberg Nirit, Andersson Noora, Zaby Katharina, Bryk Saara, Bützow Ralf, Halfwerk Johannes B. G., Hooijer Gerrit K. J., van de Vijver Marc J., Buist Marrije R., Kenter Gemma G., Brucker Sara Y., Krämer Bernhard, Staebler Annette, Bleeker Maaike C. G., Heikinheimo Markku, Kommoss Stefan, Blake Gilks C., Anttonen Mikko, Huntsman David G. Molecularly Defined Adult Granulosa Cell Tumor of the Ovary: The Clinical Phenotype Journal of the National Cancer Institute 2016;108 (11):djw134 [PubMed]

2015

• Dekker T. J. A., ter Borg S., Hooijer G. K. J., Meijer S. L., Wesseling J., Boers J. E., Schuuring E., Bart J., van Gorp J., Bult P., Riemersma S. A., van Deurzen C. H. M., Sleddens H. F. B. M., Mesker W. E., Kroep J. R., Smit V. T. H. B. M., van de Vijver M. J. Quality assessment of estrogen receptor and progesterone receptor testing in breast cancer using a tissue microarray-based approach Breast cancer research and treatment 2015;152 (2):247-252 [PubMed]
• Dekker T. J. A., ter Borg S., Hooijer G. K. J., Meijer S. L., Wesseling J., Boers J. E., Schuuring E., Bart J., van Gorp J., Bult P., Riemersma S. A., van Deurzen C. H. M., Sleddens H. F. B. M., Mesker W. E., Kroep J. R., Smit V. T. H. B. M., van de Vijver M. J. Quality assessment of estrogen receptor and progesterone receptor testing in breast cancer using a tissue microarray-based approach (vol 152, pg 247, 2015) Breast cancer research and treatment 2015;152 (2):253 [PubMed]
• Savci-Heijink C. Dilara, Halfwerk Hans, Hooijer Gerrit K. J., Horlings Hugo M., Wesseling Jelle, van de Vijver Marc J. Retrospective analysis of metastatic behaviour of breast cancer subtypes Breast cancer research and treatment 2015;150 (3):547-557 [PubMed]

2014

• Tubio Jose M. C., Li Yilong, Ju Young Seok, Martincorena Inigo, Cooke Susanna L., Tojo Marta, Gundem Gunes, Pipinikas Christodoulos P., Zamora Jorge, Raine Keiran, Menzies Andrew, Roman-Garcia Pablo, Fullam Anthony, Gerstung Moritz, Shlien Adam, Tarpey Patrick S., Papaemmanuil Elli, Knappskog Stian, van Loo Peter, Ramakrishna Manasa, Davies Helen R., Marshall John, Wedge David C., Teague Jon W., Butler Adam P., Nik-Zainal Serena, Alexandrov Ludmil, Behjati Sam, Yates Lucy R., Bolli Niccolo, Mudie Laura, Hardy Claire, Martin Sancha, McLaren Stuart, O'Meara Sarah, Anderson Elizabeth, Maddison Mark, Gamble Stephen, Foster Christopher, Warren Anne Y., Whitaker Hayley, Brewer Daniel, Eeles Rosalind, Cooper Colin, Neal David, Lynch Andy G., Visakorpi Tapio, Isaacs William B., van de Vijver Marc, Hooijer Gerrit K. J. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes Science 2014;345 (6196):531-+ [PubMed]
• Cooke Susanna L., Shlien Adam, Marshall John, Pipinikas Christodoulos P., Martincorena Inigo, Tubio Jose M.C., Li Yilong, Menzies Andrew, Mudie Laura, Ramakrishna Manasa, Yates Lucy, Davies Helen, Bolli Niccolo, Bignell Graham R., Tarpey Patrick S., Behjati Sam, Nik-Zainal Serena, Papaemmanuil Elli, Teixeira Vitor H., Raine Keiran, Oameara Sarah, Dodoran Maryam S., Teague Jon W., Butler Adam P., Iacobuzio-Donahue Christine, Santarius Thomas, Grundy Richard G., Malkin David, Greaves Mel, Munshi Nikhil, Flanagan Adrienne M., Bowtell David, Martin Sancha, Larsimont Denis, Reis-Filho Jorge S., Boussioutas Alex, Taylor Jack A., Hayes Neil D., Janes Sam M., Futreal P. Andrew, Stratton Michael R., McDermott Ultan, Campbell Peter J., Provenzano Elena, van de Vijver Marc, Richardson Andrea L., Purdie Colin, Pinder Sarah, Grogan Gaetan Mac, Vincent-Salomon Anne, Larsimont Denis, Grabau Dorthe, Sauer Torill, Garred Øystein, Ehinger Anna, Van den Eynden Gert G., van Deurzen C. H.M., Salgado Roberto, Brock Jane E., Lakhani Sunil R., Giri Dilip D., Arnould Laurent, Jacquemier Jocelyne, Treilleux Isabelle, Caldas Carlos, Chin Suet Feung, Fatima Aquila, Thompson Alastair M., Stenhouse Alasdair, Foekens John, Martens John, Sieuwerts Anieta, Brinkman Arjen, Stunnenberg Henk, Span Paul N., Sweep Fred, Desmedt Christine, Sotiriou Christos, Thomas Gilles, Broeks Annegein, Langerod Anita, Aparicio Samuel, Simpson Peter T., van ’t Veer Laura, Eyfjord Jorunn Erla, Hilmarsdottir Holmfridur, Jonasson Jon G., Børresen-Dale Anne Lise, Ta Michael Lee Ming, Wong Bernice Huimin, Tee Tan Benita Kiat, Hooijer Gerrit K.J. Processed pseudogenes acquired somatically during cancer development Nature communications 2014;5 [PubMed]

2013

• Majewski Ian J., Mittempergher Lorenza, Davidson Nadia M., Bosma Astrid, Willems Stefan M., Horlings Hugo M., de Rink Iris, Greger Liliana, Hooijer Gerrit Kj, Peters Dennis, Nederlof Petra M., Hofland Ingrid, de Jong Jeroen, Wesseling Jelle, Kluin Roelof Jc, Brugman Wim, Kerkhoven Ron, Nieboer Frank, Roepman Paul, Broeks Annegien, Muley Thomas R., Jassem Jacek, Niklinski Jacek, van Zandwijk Nico, Brazma Alvis, Oshlack Alicia, van den Heuvel Michel, Bernards René Identification of recurrent FGFR3 fusion genes in lung cancer through kinome-centred RNA sequencing Journal of pathology 2013;230 (3):270-276 [PubMed]
• Dekker T. J. A., Smit V. T. H. B. M., Hooijer G. K. J., van de Vijver M. J., Mesker W. E., Tollenaar R. A. E. M., Nortier J. W. R., Kroep J. R. Reliability of core needle biopsy for determining ER and HER2 status in breast cancer Annals of oncology 2013;24 (4):931-937 [PubMed]

2012

• Dekker Tim J. A., Borg Susan Ter, Hooijer Gerrit K. J., Meijer Sybren L., Wesseling Jelle, Boers James E., Schuuring Ed, Bart Jos, van Gorp Joost, Mesker Wilma E., Kroep Judith R., Smit Vincent T. H. B. M., van de Vijver Marc J. Determining sensitivity and specificity of HER2 testing in breast cancer using a tissue micro-array approach Breast cancer research 2012;14 (3):R93 [PubMed]

2011

• Meijer Sybren L., Wesseling Jelle, Smit Vincent T., Nederlof Petra M., Hooijer Gerrit K. J., Ruijter Henrique, Arends Jan Willem, Kliffen Mike, van Gorp Joost M., Sterk Lotus, van de Vijver Marc J. HER2 gene amplification in patients with breast cancer with equivocal IHC results Journal of clinical pathology 2011;64 (12):1069-1072 [PubMed]