P.D. Moerland MEng PhD publications

2020

• Molenaars Marte, Janssens Georges E., Williams Evan G., Jongejan Aldo, Lan Jiayi, Rabot Sylvie, Joly Fatima, Moerland Perry D., Schomakers Bauke V., Lezzerini Marco, Liu Yasmine J., McCormick Mark A., Kennedy Brian K., van Weeghel Michel, van Kampen Antoine H. C., Aebersold Ruedi, MacInnes Alyson W., Houtkooper Riekelt H. A Conserved Mito-Cytosolic Translational Balance Links Two Longevity Pathways Cell metabolism 2020;31 (3):549-563.e7 [PubMed]
• Soleimani Dodaran Maryam, Borgoni Simone, Sofyall Emre, Verschure Pernette J., Wiemann Stefan, Moerland Perry D., van Kampen Antoine H. C. Candidate methylation sites associated with endocrine therapy resistance in ER+/HER2- breast cancer BMC cancer 2020;20 (1) [PubMed]
• Bagchi Udita, Gegnaw Shumet T., Milićević Nemanja, Sandu Cristina, ten Brink Jacoline B., Jongejan Aldo, Hicks David, Moerland Perry D., Felder-Schmittbuhl Marie-Paule, Bergen Arthur A. Core-clock genes Period 1 and 2 regulate visual cascade and cell cycle components during mouse eye development Biochimica et Biophysica Acta-Gene Regulatory Mechanisms 2020;1863 (10) [PubMed]
• Hofland Tom, de Weerdt Iris, Endstra Sanne, Jongejan Aldo, Platenkamp Laura, Remmerswaal Ester B. M., Moerland Perry D., ten Berge Ineke J. M., Levin Mark-David, Kater Arnon P., Tonino Sanne H. Functional Differences between EBV- and CMV-Specific CD8+ T cells Demonstrate Heterogeneity of T cell Dysfunction in CLL HemaSphere 2020;4 (2) [PubMed]
• Adam Aziza A. A., Jongejan Aldo, Moerland Perry D., van der Mark Vincent A., Oude Elferink Ronald P., Chamuleau Robert A. F. M., Hoekstra Ruurdtje Genome-wide expression profiling reveals increased stability and mitochondrial energy metabolism of the human liver cell line HepaRG-CAR Cytotechnology 2020;72 (3):377-395 [PubMed]
• Richmond Phillip A., van der Kloet Frans, Vaz Frederic M., Lin David, Uzozie Anuli, Graham Emma, Kobor Michael, Mostafavi Sara, Moerland Perry D., Lange Philipp F., van Kampen Antoine H. C., Wasserman Wyeth W., Engelen Marc, Kemp Stephan, van Karnebeek Clara D. M. Multi-Omic Approach to Identify Phenotypic Modifiers Underlying Cerebral Demyelination in X-Linked Adrenoleukodystrophy Frontiers in cell and developmental biology 2020;8 [PubMed]
• Borgoni Simone, Sofyalı Emre, Soleimani Maryam, Wilhelm Heike, Müller-Decker Karin, Will Rainer, Noronha Ashish, Beumers Lukas, Verschure Pernette J., Yarden Yosef, Magnani Luca, van Kampen Antoine H. C., Moerland Perry D., Wiemann Stefan Time-resolved profiling reveals atf3 as a novel mediator of endocrine resistance in breast cancer Cancers 2020;12 (10):1-19 [PubMed]

2019

• de Vries L. C. S., Duarte J. M., de Krijger M., Welting O., van Hamersveld P. H. P., van Leeuwen-Hilbers F. W. M., Moerland P. D., Jongejan A., D'Haens G. R., de Jonge W. J., Wildenberg M. E. A JAK1 Selective Kinase Inhibitor and Tofacitinib Affect Macrophage Activation and Function Inflammatory bowel diseases 2019;25 (4):647-660 [PubMed]
• Stenvers Dirk Jan, Jongejan Aldo, Atiqi Sadaf, Vreijling Jeroen P., Limonard Eelkje J., Endert Erik, Baas Frank, Moerland Perry D., Fliers Eric, Kalsbeek Andries, Bisschop Peter H. Diurnal rhythms in the white adipose tissue transcriptome are disturbed in obese individuals with type 2 diabetes compared with lean control individuals Diabetologia 2019 [PubMed]
• Reiniers M. J., de Haan L., Weijer R., Wiggers J. K., Jongejan A., Moerland P. D., Alles L. K., van Kampen A. H. C., van Gulik T. M., Heger M., van Golen R. F. Effect of preoperative biliary drainage on cholestasis-associated inflammatory and fibrotic gene signatures in perihilar cholangiocarcinoma British journal of surgery 2019;106 (1):55-58 [PubMed]
• Hermkens Dorien M. A., Stam Olga C. G., de Wit Nienke M., Fontijn Ruud D., Jongejan Aldo, Moerland Perry D., Mackaaij Claire, Waas Ingeborg S. E., Daemen Mat J. A. P., de Vries Helga E. Profiling the unique protective properties of intracranial arterial endothelial cells Acta neuropathologica communications 2019;7 (1):151 [PubMed]
• van Altena Allard J., Moerland Perry D., Zwinderman Aeilko H., Olabarriaga S. lvia Delgado Usage of the term big data in biomedical publications: A text mining approach Big Data and Cognitive Computing 2019;3 (1):1-12

2018

• Adam Aziza A. A., van Wenum Martien, van der Mark Vincent A., Jongejan Aldo, Moerland Perry D., Houtkooper Riekelt H., Wanders Ronald J. A., Oude Elferink Ronald P., Chamuleau Robert A. F. M., Hoekstra Ruurdtje AMC-Bio-Artificial Liver culturing enhances mitochondrial biogenesis in human liver cell lines: The role of oxygen, medium perfusion and 3D configuration Mitochondrion 2018;39:30-42 [PubMed]
• van Altena A. J., Moerland P. D., Zwinderman A. H., Olabarriaga S. D. Analysis of the term 'big data': Usage in biomedical publicationsin: Zoran Obradovic, Ricardo Baeza-Yates, Jeremy Kepner, Raghunath Nambiar, Chonggang Wang, Masashi Toyoda, Toyotaro Suzumura, Xiaohua Hu, Alfredo Cuzzocrea, Jian Tang, Hui Zang, Jian-Yun Nie, Rumi Ghosh, editors. Proceedings - 2017 IEEE International Conference on Big Data, Big Data 2017. Institute of Electrical and Electronics Engineers Inc.; 2018. p. 1253-1258
• van Wenum Martien, Treskes Philipp, Adam Aziza A. A., van der Mark Vincent. A., Jongejan Aldo, Moerland Perry D., van Gulik Thomas M., Oude Elferink Ronald P. J., Chamuleau Robert A. F. M., Hoekstra Ruurdtje HepaRG-Progenitor Cell Derived Hepatocytes Cultured in Bioartificial Livers Are Protected from Healthy- and Acute Liver Failure-Plasma Induced Toxicity Cellular physiology and biochemistry 2018;48 (5):2189-2204 [PubMed]
• de Weerdt Iris, Hofland Tom, Lameris Roeland, Endstra Sanne, Jongejan Aldo, Moerland Perry D., de Bruin Renee C. G., Remmerswaal Ester B. M., ten Berge Ineke J. M., Liu Nora, van der Stelt Mario, Faber Laura M., Levin Mark-David, Eldering Eric, Tonino Sanne H., de Gruijl Tanja D., van der Vliet Hans J., Kater Arnon P. Improving CLL Vγ9Vδ2-T-cell fitness for cellular therapy by ex vivo activation and ibrutinib Blood 2018;132 (21):2260-2272 [PubMed]
• van Wenum Martien, Adam Aziza A. A., van der Mark Vincent A., Chang Jung-Chin, Wildenberg Manon E., Hendriks Erik J., Jongejan Aldo, Moerland Perry D., van Gulik Thomas M., Oude Elferink Ronald P., Chamuleau Robert A. F. M., Hoekstra Ruurdtje Oxygen drives hepatocyte differentiation and phenotype stability in liver cell lines Journal of cell communication and signaling 2018;12 (3):575 [PubMed]
• Kok M. G. M., de Ronde M. W. J., Moerland P. D., Ruijter J. M., Creemers E. E., Pinto-Sietsma S. J. Small sample sizes in high-throughput miRNA screens: A common pitfall for the identification of miRNA biomarkers Biomolecular Detection and Quantification 2018;15:1-5 [PubMed]
• de Ronde Maurice W. J., Ruijter Jan M., Moerland Perry D., Creemers Esther E., Pinto-Sietsma Sara-Joan Study design and qPCR data analysis guidelines for reliable circulating miRNA biomarker experiments: A review Clinical chemistry 2018;64 (9):1308-1318 [PubMed]
• Seijkens Tom T. P., van Tiel Claudia M., Kusters Pascal J. H., Atzler Dorothee, Soehnlein Oliver, Zarzycka Barbara, Aarts Suzanne A. B. M., Lameijer Marnix, Gijbels Marion J., Beckers Linda, den Toom Myrthe, Slütter Bram, Kuiper Johan, Duchene Johan, Aslani Maria, Megens Remco T. A., van 't Veer Cornelis, Kooij Gijs, Schrijver Roy, Hoeksema Marten A., Boon Louis, Fay Francois, Tang Jun, Baxter Samantha, Jongejan Aldo, Moerland Perry D., Vriend Gert, Bleijlevens Boris, Fisher Edward A., Duivenvoorden Raphael, Gerdes Norbert, de Winther Menno P. J., Nicolaes Gerry A., Mulder Willem J. M., Weber Christian, Lutgens Esther Targeting CD40-Induced TRAF6 Signaling in Macrophages Reduces Atherosclerosis Journal of the American College of Cardiology 2018;71 (5):527-542 [PubMed]
• Oja A. E., Piet B., Helbig C., Stark R., van der Zwan D., Blaauwgeers H., Remmerswaal E. B. M., Amsen D., Jonkers R. E., Moerland P. D., Nolte M. A., van Lier R. A. W., Hombrink P. Trigger-happy resident memory CD4(+) T cells inhabit the human lungs Mucosal immunology 2018;11:654-667 [PubMed]

2017

• Bennis Anna, ten Brink Jacoline B., Moerland Perry D., Heine Vivi M., Bergen Arthur A. Comparative gene expression study and pathway analysis of the human iris- and the retinal pigment epithelium PLoS ONE 2017;12 (8):e0182983 [PubMed]
• de Ronde Maurice W. J., Kok Maayke G. M., Moerland Perry D., van den Bossche Jan, Neele Annette E., Halliani Amalia, van der Made Ingeborg, de Winther Menno P. J., Meijers Joost C. M., Creemers Esther E., Pinto-Sietsma Sara-Joan High miR-124-3p expression identifies smoking individuals susceptible to atherosclerosis Atherosclerosis 2017;263:377-384 [PubMed]
• Duijvis Nicolette W., Moerland Perry D., Kunne Cindy, Slaman Monique M. W., van Dooren Faas H., Vogels Esther W., de Jonge Wouter J., Meijer Sybren L., Fluiter Kees, te Velde Anje A. Inhibition of miR-142-5P ameliorates disease in mouse models of experimental colitis PLoS ONE 2017;12 (10):e0185097 [PubMed]
• van Attekum M. H. A., Terpstra S., Slinger E., von Lindern M., Moerland P. D., Jongejan A., Kater A. P., Eldering E. Macrophages confer survival signals via CCR1-dependent translational MCL-1 induction in chronic lymphocytic leukemia Oncogene 2017;36 (26):3651-3660 [PubMed]
• Hakimzadeh Nazanin, Elias Joëlle, Wijntjens Gilbert W. M., Theunissen Ruud, van Weert Angela, Smulders Martijn W., van den Akker Nynke, Moerland Perry D., Verberne Hein J., Hoebers Loes P., Henriques Jose P. S., van der Laan Anja M., Ilhan Mustafa, Post Mark, Bekkers Sebastiaan C. A. M., Piek Jan J. Monocytic microRNA profile associated with coronary collateral artery function in chronic total occlusion patients Scientific reports 2017;7 (1) [PubMed]
• Weijer Ruud, Clavier Séverine, Zaal Esther A., Pijls Maud M. E., van Kooten Robert T., Vermaas Klaas, Leen René, Jongejan Aldo, Moerland Perry D., van Kampen Antoine H. C., van Kuilenburg André B. P., Berkers Celia R., Lemeer Simone, Heger Michal Multi-OMIC profiling of survival and metabolic signaling networks in cells subjected to photodynamic therapy Cellular and molecular life sciences 2017;74 (6):1133-1151 [PubMed]
• Hombrink Pleun, Helbig Christina, Backer Ronald A., Piet Berber, Oja Anna E., Stark Regina, Brasser Giso, Jongejan Aldo, Jonkers René E., Nota Benjamin, Basak Onur, Clevers Hans C., Moerland Perry D., Amsen Derk, van Lier René A. W. Programs for the persistence, vigilance and control of human CD8(+) lung-resident memory T cells (vol 17, pg 1467, 2016) Nature immunology 2017;18 (2):246 [PubMed]
• van Oorschot Bregje, Uitterhoeve Lon, Oomen Ilja, ten Cate Rosemarie, Medema Jan Paul, Vrieling Harry, Stalpers Lukas J. A., Moerland Perry D., Franken Nicolaas A. P. Prostate Cancer Patients with Late Radiation Toxicity Exhibit Reduced Expression of Genes Involved in DNA Double-Strand Break Repair and Homologous Recombination Cancer research 2017;77 (6):1485-1491 [PubMed]
• Bennis A., Jacobs J. G., Catsburg L. A. E., ten Brink J. B., Koster C., Schlingemann R. O., van Meurs J., Gorgels T. G. M. F., Moerland P. D., Heine V. M., Bergen A. A. Stem Cell Derived Retinal Pigment Epithelium: The Role of Pigmentation as Maturation Marker and Gene Expression Profile Comparison with Human Endogenous Retinal Pigment Epithelium STEM CELL REVIEWS AND REPORTS 2017;13 (5):659-669 [PubMed]
• van Hagen Martijn, Piebes Diewertje G. E., de Leeuw Wim C., Vuist Ilona M., van Roon-Mom Willeke M. C., Moerland Perry D., Verschure Pernette J. The dynamics of early-state transcriptional changes and aggregate formation in a Huntington's disease cell model BMC genomics 2017;18 (1):373 [PubMed]

2016

• Sontrop Herman M. J., Reinders Marcel J. T., Moerland Perry D. Breast cancer subtype predictors revisited: from consensus to concordance? BMC medical genomics 2016;9 (1):26 [PubMed]
• Nandal Umesh K., van Kampen Antoine H. C., Moerland Perry D. compendiumdb: an R package for retrieval and storage of functional genomics data Bioinformatics (Oxford, England) 2016;32 (18):2856-2857 [PubMed]
• Sontrop Herman M. J., Reinders Marcel J. T., Moerland Perry D. Erratum to: Breast cancer subtype predictors revisited: from consensus to concordance? BMC medical genomics 2016;9 (1):39 [PubMed]
• Kok M. G. M., Mandolini C., Moerland P. D., de Ronde M. W. J., Sondermeijer B. M., Halliani A., Nieuwland R., Cipollone F., Creemers E. E., Meijers J. C. M., Pinto-Sietsma S. J. Low miR-19b-1-5p expression in isolated platelets after aspirin use is related to aspirin insensitivity International journal of cardiology 2016;203:262-263 [PubMed]
• Hamers Anouk A. J., Argmann Carmen, Moerland Perry D., Koenis Duco S., Marinković Goran, Sokolović Milka, de Vos Alex F., de Vries Carlie J. M., van Tiel Claudia M. Nur77-deficiency in bone marrow-derived macrophages modulates inflammatory responses, extracellular matrix homeostasis, phagocytosis and tolerance BMC genomics 2016;17 (1):162 [PubMed]
• Hombrink Pleun, Helbig Christina, Backer Ronald A., Piet Berber, Oja Anna E., Stark Regina, Brasser Giso, Jongejan Aldo, Jonkers René E., Nota Benjamin, Basak Onur, Clevers Hans C., Moerland Perry D., Amsen Derk, van Lier René A. W. Programs for the persistence, vigilance and control of human CD8(+) lung-resident memory T cells Nature immunology 2016;17 (12):1467-1478 [PubMed]
• van Kampen Antoine H. C., Moerland Perry D. Taking Bioinformatics to Systems Medicine Methods in molecular biology (Clifton, N.J.) 2016;1386:17-41 [PubMed]
• van Altena Allard J., Moerland Perry D., Zwinderman Aeilko H., Olabarriaga Sílvia D. Understanding big data themes from scientific biomedical literature through topic modeling Journal of big data 2016;3:23

2015

• Sontrop Herman Michael Johannes A Critical Perspective On Microarray Breast Cancer Gene Expression Profiling 2015. 194p. ISBN 9789462950757. [UvA Dissertations Online] Technische Universiteit Delft: -. (Supervisor: Reinders M. J. T.; Co-supervisor: Moerland P. D.)
• te Raa G. D., Moerland P. D., Leeksma A. C., Derks I. A., Yigittop H., Laddach N., Loden-van Straaten M., Navrkalova V., Trbusek M., Luijks D. M., Zenz T., Skowronska A., Hoogendoorn M., Stankovic T., van Oers M. H., Eldering E., Kater A. P. Assessment of p53 and ATM functionality in chronic lymphocytic leukemia by multiplex ligation-dependent probe amplification Cell death & disease 2015;6:e1852 [PubMed]
• Vieira Braga Felipe A., Hertoghs Kirsten M. L., Kragten Natasja A. M., Doody Gina M., Barnes Nicholas A., Remmerswaal Ester B. M., Hsiao Cheng-Chih, Moerland Perry D., Wouters Diana, Derks Ingrid A. M., van Stijn Amber, Demkes Marc, Hamann Jörg, Eldering Eric, Nolte Martijn A., Tooze Reuben M., ten Berge Ineke J. M., van Gisbergen Klaas P. J. M., van Lier René A. W. Blimp-1 homolog Hobit identifies effector-type lymphocytes in humans European journal of immunology 2015;45 (10):2945-2958 [PubMed]
• Nandal Umesh K., Vlietstra Wytze J., Byrman Carsten, Jeeninga Rienk E., Ringrose Jeffrey H., van Kampen Antoine H. C., Speijer Dave, Moerland Perry D. Candidate prioritization for low-abundant differentially expressed proteins in 2D-DIGE datasets BMC bioinformatics 2015;16 (1):25 [PubMed]
• Palao Teresa, Swärd Karl, Jongejan Aldo, Moerland Perry D., de Vos Judith, van Weert Angela, Arribas Silvia M., Groma Gergely, VanBavel Ed, Bakker Erik N. T. P. Gene Expression and MicroRNA Expression Analysis in Small Arteries of Spontaneously Hypertensive Rats. Evidence for ER Stress PLoS ONE 2015;10 (9):e0137027 [PubMed]
• Jebbink J. M., Boot R. G., Keijser R., Moerland P. D., Aten J., Veenboer G. J. M., van Wely M., Buimer M., Ver Loren van Themaat E., Aerts J. M. F. G., van der Post J. A. M., Afink G. B., Ris-Stalpers C. Increased glucocerebrosidase expression and activity in preeclamptic placenta Placenta 2015;36 (2):160-169 [PubMed]
• Kurakula Kondababu, Sommer Daniela, Sokolovic Milka, Moerland Perry D., Scheij Saskia, van Loenen Pieter B., Koenis Duco S., Zelcer Noam, van Tiel Claudia M., de Vries Carlie J. M. LIM-Only Protein FHL2 Is a Positive Regulator of Liver X Receptors in Smooth Muscle Cells Involved in Lipid Homeostasis Molecular and cellular biology 2015;35 (1):52-62 [PubMed]
• Weijer Ruud, Broekgaarden Mans, van Golen Rowan F., Bulle Esther, Nieuwenhuis Esther, Jongejan Aldo, Moerland Perry D., van Kampen Antoine H. C., van Gulik Thomas M., Heger Michal Low-power photodynamic therapy induces survival signaling in perihilar cholangiocarcinoma cells BMC cancer 2015;15 (1):1014 [PubMed]
• van Uitert Miranda, Moerland Perry D., Enquobahrie Daniel A., Laivuori Hannele, van der Post Joris A. M., Ris-Stalpers Carrie, Afink Gijs B. Meta-Analysis of Placental Transcriptome Data Identifies a Novel Molecular Pathway Related to Preeclampsia PLoS ONE 2015;10 (7):e0132468 [PubMed]
• Boekel Jorrit, Chilton John M., Cooke Ira R., Horvatovich Peter L., Jagtap Pratik D., Käll Lukas, Lehtiö Janne, Lukasse Pieter, Moerland Perry D., Griffin Timothy J. Multi-omic data analysis using Galaxy Nature biotechnology 2015;33 (2):137-139 [PubMed]
• Kok Maayke G. M., Halliani Amalia, Moerland Perry D., Meijers Joost C. M., Creemers Esther E., Pinto-Sietsma Sara-Joan Normalization panels for the reliable quantification of circulating microRNAs by RT-qPCR FASEB journal 2015;29 (9):3853-3862 [PubMed]
• te Raa G. D., Derks I. A. M., Navrkalova V., Skowronska A., Moerland P. D., van Laar J., Oldreive C., Monsuur H., Trbusek M., Malcikova J., Lodén M., Geisler C. H., Hüllein J., Jethwa A., Zenz T., Pospisilova S., Stankovic T., van Oers M. H. J., Kater A. P., Eldering E. The impact of SF3B1 mutations in CLL on the DNA-damage response Leukemia 2015;29 (5):1133-1142 [PubMed]
• van der Meer Anne J., Scicluna Brendon P., Moerland Perry D., Lin Jiang, Jacobson Eric W., Vlasuk George P., van der Poll Tom The Selective Sirtuin 1 Activator SRT2104 Reduces Endotoxin-Induced Cytokine Release and Coagulation Activation in Humans Critical care medicine 2015;43 (6):e199-e202 [PubMed]

2014

• Kerami Zohra, Duijvis Nicolette W., Vogels Esther W., van Dooren Faas H., Moerland Perry D., te Velde Anje A. Effect of interleukin-17 on gene expression profile of fibroblasts from Crohn's disease patients Journal of Crohn s & colitis 2014;8 (10):1208-1216 [PubMed]
• Koopmann Tamara T., Adriaens Michiel E., Moerland Perry D., Marsman Roos F., Westerveld Margriet L., Lal Sean, Zhang Taifang, Simmons Christine Q., Baczko Istvan, Dos Remedios Cristobal, Bishopric Nanette H., Varro Andras, George Alfred L., Lodder Elisabeth M., Bezzina Connie R. Genome-wide identification of expression quantitative trait loci (eQTLs) in human heart PLoS ONE 2014;9 (5):e97380 [PubMed]
• Lodder Elisabeth M., Scicluna Brendon P., Beekman Leander, Arends Danny, Moerland Perry D., Tanck Michael W. T., Adriaens Michiel E., Bezzina Connie R. Integrative genomic approach identifies multiple genes involved in cardiac collagen deposition Circulation. Cardiovascular genetics 2014;7 (6):790-798 [PubMed]
• Stobbe Miranda D., Jansen Gerbert A., Moerland Perry D., van Kampen Antoine H. C. Knowledge representation in metabolic pathway databases Briefings in bioinformatics 2014;15 (3):455-470 [PubMed]
• Wegdam Wouter, Argmann Carmen A., Kramer Gertjan, Vissers Johannes P., Buist Marrije R., Kenter Gemma G., Aerts Johannes M. F. G., Meijer Danielle, Moerland Perry D. Label-free LC-MSe in tissue and serum reveals protein networks underlying differences between benign and malignant serous ovarian tumors PLoS ONE 2014;9 (9):e108046-(12 p.) [PubMed]
• van Oorschot Bregje, Hovingh Suzanne E., Moerland Perry D., Medema Jan Paul, Stalpers Lukas J. A., Vrieling Harry, Franken Nicolaas A. P. Reduced activity of double-strand break repair genes in prostate cancer patients with late normal tissue radiation toxicity International journal of radiation oncology, biology, physics 2014;88 (3):664-670 [PubMed]
• Tax David M.J., Sontrop Herman M.J., Reinders Marcel J.T., Moerland Perry D. The effect of aggregating subtype performances depends strongly on the performance measure usedin: Proceedings - International Conference on Pattern Recognition. Institute of Electrical and Electronics Engineers Inc.; 2014. p. 3720-3725

2013

• Stobbe Miranda D., Swertz Morris A., Thiele Ines, Rengaw Trebor, van Kampen Antoine H. C., Moerland Perry D. Consensus and conflict cards for metabolic pathway databases BMC systems biology 2013;7 (1):50 [PubMed]
• Kleinrouweler C. Emily, van Uitert Miranda, Moerland Perry D., Ris-Stalpers Carrie, van der Post Joris A. M., Afink Gijs B. Differentially expressed genes in the pre-eclamptic placenta: a systematic review and meta-analysis PLoS ONE 2013;8 (7):e68991 [PubMed]
• Bergonzi Sara, Albani Maria C., Ver Loren van Themaat Emiel, Nordström Karl J. V., Wang Renhou, Schneeberger Korbinian, Moerland Perry D., Coupland George Mechanisms of Age-Dependent Response to Winter Temperature in Perennial Flowering of Arabis alpina Science 2013;340 (6136):1094-1097 [PubMed]
• McClellan Elizabeth A., Moerland Perry D., van der Spek Peter J., Stubbs Andrew P. NetWeAvers: an R package for integrative biological network analysis with mass spectrometry data Bioinformatics (Oxford, England) 2013;29 (22):2946-2947 [PubMed]

2012

• Wegdam Wouter, Moerland Perry D., Meijer Danielle, de Jong Shreyas M., Hoefsloot Huub C. J., Kenter Gemma G., Buist Marrije R., Aerts Johannes M. F. G. A critical assessment of SELDI-TOF-MS for biomarker discovery in serum and tissue of patients with an ovarian mass Proteome science 2012;10 (1):45-(10 p.) [PubMed]
• Lodder Elisabeth M., Scicluna Brendon P., Milano Annalisa, Sun Albert Y., Tang Hao, Remme Carol Ann, Moerland Perry D., Tanck Michael W. T., Pitt Geoffrey S., Marchuk Douglas A., Bezzina Connie R. Dissection of a Quantitative Trait Locus for PR Interval Duration Identifies Tnni3k as a Novel Modulator of Cardiac Conduction PLoS genetics 2012;8 (12):e1003113 [PubMed]
• Stobbe Miranda D., Houten Sander M., van Kampen Antoine H. C., Wanders Ronald J. A., Moerland Perry D. Improving the description of metabolic networks: the TCA cycle as example FASEB journal 2012;26 (9):3625-3636 [PubMed]
• Helbig Christina, Gentek Rebecca, Backer Ronald A., de Souza Yevan, Derks Ingrid A. M., Eldering Eric, Wagner Koen, Jankovic Dragana, Gridley Thomas, Moerland Perry D., Flavell Richard A., Amsen Derk Notch controls the magnitude of T helper cell responses by promoting cellular longevity Proceedings of the National Academy of Sciences of the United States of America 2012;109 (23):9041-9046 [PubMed]
• Kramer Gertjan, Moerland Perry D., Jeeninga Rienk E., Vlietstra Wytze J., Ringrose Jeffrey H., Byrman Carsten, Berkhout Ben, Speijer Dave Proteomic analysis of HIV-T cell interaction: an update Frontiers in microbiology 2012;3:240-(6 p.) [PubMed]
• Stobbe Miranda D. The road to knowledge: from biology to databases and back again 2012. 168p. [UvA Dissertations Online] University of Amsterdam. (Supervisor: van Kampen A. H. C.; Co-supervisor: Moerland P. D.)

2011

• Sontrop Herman M. J., Verhaegh Wim F. J., Reinders Marcel J. T., Moerland Perry D. An evaluation protocol for subtype-specific breast cancer event prediction PLoS ONE 2011;6 (7):e21681 [PubMed]
• Stobbe Miranda D., Houten Sander M., Jansen Gerbert A., van Kampen Antoine H. C., Moerland Perry D. Critical assessment of human metabolic pathway databases: a stepping stone for future integration BMC systems biology 2011;5 (1):165 [PubMed]
• van Manen Daniëlle, Delaneau Olivier, Kootstra Neeltje A., Boeser-Nunnink Brigitte D., Limou Sophie, Bol Sebastiaan M., Burger Judith A., Zwinderman Aeilko H., Moerland Perry D., van 't Slot Ruben, Zagury Jean-François, van 't Wout Angélique B., Schuitemaker Hanneke Genome-wide association scan in HIV-1-infected individuals identifying variants influencing disease course PLoS ONE 2011;6 (7):e22208 [PubMed]
• Bol Sebastiaan M., Moerland Perry D., Limou Sophie, van Remmerden Yvonne, Coulonges Cédric, van Manen Daniëlle, Herbeck Joshua T., Fellay Jacques, Sieberer Margit, Sietzema Jantine G., van 't Slot Ruben, Martinson Jeremy, Zagury Jean-François, Schuitemaker Hanneke, van 't Wout Angélique B. Genome-Wide Association Study Identifies Single Nucleotide Polymorphism in DYRK1A Associated with Replication of HIV-1 in Monocyte-Derived Macrophages PLoS ONE 2011;6 (2):e17190 [PubMed]
• Hakvoort Theodorus B. M., Moerland Perry D., Frijters Raoul, Sokolovic Aleksandar, Labruyere Wilhelmina T., Vermeulen Jacqueline L. M., Ver Loren van Themaat Emiel, Breit Timo M., Wittink Floyd R. A., van Kampen Antoine H. C., Verhoeven Arthur J., Lamers Wouter H., Sokolovic Milka Interorgan Coordination of the Murine Adaptive Response to Fasting Journal of biological chemistry 2011;286 (18):16332-16343 [PubMed]
• Noordhuis Maartje G., Fehrmann Rudolf S. N., Wisman G. Bea A., Nijhuis Esther R., van Zanden Jelmer J., Moerland Perry D., Ver Loren van Themaat Emiel, Volders Haukeline H., Kok Mirjam, ten Hoor Klaske A., Hollema Harry, de Vries Elisabeth G. E., de Bock Geertruida H., van der Zee Ate G. J., Schuuring Ed Involvement of the TGF-beta and beta-Catenin Pathways in Pelvic Lymph Node Metastasis in Early-Stage Cervical Cancer Clinical cancer research 2011;17 (6):1317-1330 [PubMed]
• Sondermeijer Brigitte M., Bakker Annemieke, Halliani Amalia, de Ronde Maurice W. J., Marquart Arnoud A., Tijsen Anke J., Mulders Ties A., Kok Maayke G. M., Battjes Suzanne, Maiwald Steffi, Sivapalaratnam Suthesh, Trip Mieke D., Moerland Perry D., Meijers Joost C. M., Creemers Esther E., Pinto-Sietsma Sara-Joan Platelets in patients with premature coronary artery disease exhibit upregulation of miRNA340* and miRNA624* PLoS ONE 2011;6 (10):e25946 [PubMed]
• Bol Sebastiaan M., Booiman Thijs, Bunnik Evelien M., Moerland Perry D., van Dort Karel, Strauss Jerome F., Sieberer Margit, Schuitemaker Hanneke, Kootstra Neeltje A., van 't Wout Angélique B. Polymorphism in HIV-1 dependency factor PDE8A affects mRNA level and HIV-1 replication in primary macrophages Virology 2011;420 (1):32-42 [PubMed]

2010

• van der Pouw Kraan T. C. T. M., Schirmer Stephan H., Fledderus Joost O., Moerland Perry D., Baggen Josefien M., Leyen Thomas A., van der Laan Anja M., Piek Jan J., van Royen Niels, Horrevoets Anton J. G. Expression of a retinoic acid signature in circulating CD34 cells from coronary artery disease patients BMC genomics 2010;11 (1):388 [PubMed]
• Tijsen Anke J., Creemers Esther E., Moerland Perry D., Pinto Yigal M. MicroRNAs As Circulating Biomarkers for Heart Failure: Questions About MiR-423-5p Response Circulation research 2010;106 (9):E9
• Tijsen Anke J., Creemers Esther E., Moerland Perry D., de Windt Leon J., van der Wal Allard C., Kok Wouter E., Pinto Yigal M. MiR423-5p As a Circulating Biomarker for Heart Failure Circulation research 2010;106 (6):1035-U63 [PubMed]
• Hertoghs Kirsten M. L., Moerland Perry D., van Stijn Amber, Remmerswaal Ester B. M., Yong Sila L., van de Berg Pablo J. E. J., van Ham S. Marieke, Baas Frank, ten Berge Ineke J. M., van Lier René A. W. Molecular profiling of cytomegalovirus-induced human CD8+ T cell differentiation Journal of clinical investigation 2010;120 (11):4077-4090 [PubMed]
• Sontrop Herman, Verhaegh Wim F. J., Van Den Ham René, Reinders Marcel J. T., Moerland Perry Subtype specific breast cancer event predictionin: 2010 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2010. 2010., ISBN 9781612847924

2009

• Sontrop Herman M. J., Moerland Perry D., van den Ham René, Reinders Marcel J. T., Verhaegh Wim F. J. A comprehensive sensitivity analysis of microarray breast cancer classification under feature variability BMC bioinformatics 2009;10:389 [PubMed]
• Sontrop Herman, Van den Ham René, Moerland Perry, Reinders Marcel J. T., Verhaegh Wim F. J. A sensitivity analysis of microarray feature selection and classification under measurement noisein: 2009 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2009. 2009., ISBN 9781424447619
• Wegdam Wouter, Moerland Perry D., Buist Marrije R., Ver Loren van Themaat Emiel, Bleijlevens Boris, Hoefsloot Huub C. J., de Koster Chris G., Aerts Johannes M. F. G. Classification-based comparison of pre-processing methods for interpretation of mass spectrometry generated clinical datasets Proteome science 2009;7 (1):19-(17 p) [PubMed]
• Schirmer Stephan H., van Royen Niels, Moerland Perry D., Fledderus Joost O., Henriques José P., van der Schaaf René J., Vis Marije M., Baan Jan, Koch Karel T., Horrevoets Anton J. G., Hoefer Imo E., Piek Jan J. Local Cytokine Concentrations and Oxygen Pressure Are Related to Maturation of the Collateral Circulation in Humans Journal of the American College of Cardiology 2009;53 (23):2141-2147 [PubMed]
• Bijl Nora, Sokolović Milka, Vrins Carlos, Langeveld Mirjam, Moerland Perry D., Ottenhoff Roelof, van Roomen Cindy P. A. A., Claessen Nike, Boot Rolf G., Aten Jan, Groen Albert K., Aerts Johannes M. F. G., van Eijk Marco Modulation of Glycosphingolipid Metabolism Significantly Improves Hepatic Insulin Sensitivity and Reverses Hepatic Steatosis in Mice Hepatology (Baltimore, Md.) 2009;50 (5):1431-1441 [PubMed]
• van Munster Barbara C., van Breemen Marielle J., Moerland Perry D., Speijer Dave, de Rooij Sophia E., Pfrommer Christel J., Levi Marcel, Hollmann Markus W., Aerts Johannes M., Zwinderman Aeilko H., Korevaar Johanna C. Proteomic Profiling of Plasma and Serum in Elderly Patients With Delirium Journal of neuropsychiatry and clinical neurosciences 2009;21 (3):284-291 [PubMed]
• Schirmer Stephan H., Fledderus Joost O., van der Laan Anja M., van der Pouw-Kraan Tineke C. T. M., Moerland Perry D., Volger Oscar L., Baggen Josefien M., Böhm Michael, Piek Jan J., Horrevoets Anton J. G., van Royen Niels Suppression of inflammatory signaling in monocytes from patients with coronary artery disease Journal of molecular and cellular cardiology 2009;46 (2):177-185 [PubMed]

2008

• Lagarde S. M., Ver Loren van Themaat P. E., Moerland P. D., Gilhuijs-Pederson L. A., ten Kate F. J. W., Reitsma P. H., van Kampen A. H. C., Zwinderman A. H., Baas F., van Lanschot J. J. B. Analysis of Gene Expression Identifies Differentially Expressed Genes and Pathways Associated with Lymphatic Dissemination in Patients with Adenocarcinoma of the Esophagus Annals of surgical oncology 2008;15 (12):3459-3470 [PubMed]
• van de Mortel Judith E., Schat Henk, Moerland Perry D., Ver Loren van Themaat Emiel, van der Ent Sjoerd, Blankestijn Hetty, Ghandilyan Artak, Tsiatsiani Styliani, Aarts Mark G. M. Expression differences for genes involved in lignin, glutathione and sulphate metabolism in response to cadmium in Arabidopsis thaliana and the related Zn/Cd-hyperaccumulator Thlaspi caerulescens Plant, cell & environment 2008;31 (3):301-324 [PubMed]
• Biewenga Petra, Buist Marrije R., Moerland Perry D., van Thernaat Emiel Ver Loren, van Kampen Antoine H. C., ten Kate Fiebo J. W., Baas Frank Gene expression in early stage cervical cancer Gynecologic oncology 2008;108 (3):520-526 [PubMed]
• Schirmer Stephan H., Fledderus Joost O., Bot Pieter T. G., Moerland Perry D., Hoefer Imo E., Baan Jan, Henriques José P. S., van der Schaaf René J., Vis Marije M., Horrevoets Anton J. G., Piek Jan J., van Royen Niels Interferon-beta signaling is enhanced in patients with insufficient coronary collateral artery development and inhibits arteriogenesis in mice Circulation research 2008;102 (10):1286-1294 [PubMed]
• Zelinkova Zuzana, van Beelen Astrid J., de Kort Floor, Moerland Perry D., van Themaat Emiel Ver Loren, te Velde Anje A., van Deventer Sander J., de Jong Esther C., Hommes Daniel W. Muramyl dipeptide-induced differential gene expression in NOD2 mutant and wild-type Crohn's disease patient-derived dendritic cells Inflammatory bowel diseases 2008;14 (2):186-194 [PubMed]

2007

• Volger Oscar L., Fledderus Joost O., Kisters Natasja, Fontijn Ruud D., Moerland Perry D., Kuiper Johan, van Berkel Theo J., Bijnens Ann-Pascale J. J., Daemen Mat J. A. P., Pannekoek Hans, Horrevoets Anton J. G. Distinctive expression of chemokines and transforming growth factor-beta signaling in human arterial endothelium during atherosclerosis American journal of pathology 2007;171 (1):326-337 [PubMed]
• Soufan A. T., van den Berg G., Moerland P. D., Massink M. M. G., van den Hoff M. J. B., Moorman A. F. M., Ruijter J. M. Three-dimensional measurement and visualization of morphogenesis applied to cardiac embryology Journal of microscopy 2007;225 (Part 3):269-274 [PubMed]

2006

• van de Mortel Judith E., Almar Villanueva Laia, Schat Henk, Kwekkeboom Jeroen, Coughlan Sean, Moerland Perry D., Ver Loren van Themaat Emiel, Koornneef Maarten, Aarts Mark G. M. Large expression differences in genes for iron and zinc homeostasis, stress response, and lignin biosynthesis distinguish roots of Arabidopsis thaliana and the related metal hyperaccumulator Thlaspi caerulescens Plant physiology 2006;142 (3):1127-1147 [PubMed]

1999

• Moerland Perry Classification using localized mixtures of expertsin: IEE Conference Publication. IEE; 1999. p. 838-843, ISBN 0852967217; 9780852967218
• Moerland Perry Comparison of mixture models for density estimationin: IEE Conference Publication. IEE; 1999. p. 25-30, ISBN 0852967217

1998

• Moerland Perry D., Fiesler Emile, Saxena Indu Discrete all-positive multilayer perceptrons for optical implementation Optical Engineering 1998;37 (4):1305-1315

1997

• Saxena I., Moerland P., Fiesler E., Pourzand A. Handwritten digit recognition with binary optical perceptronin: Wulfram Gerstner, Alain Germond, Martin Hasler, Jean-Daniel Nicoud, editors. Artificial Neural Networks - ICANN 1997 - 7th International Conference, Proceeedings. Springer Verlag; 1997. p. 1253-1258, ISBN 3540636315; 9783540636311
• Moerland Perry Mixtures of experts estimate a posteriori probabilitiesin: Wulfram Gerstner, Alain Germond, Martin Hasler, Jean-Daniel Nicoud, editors. Artificial Neural Networks - ICANN 1997 - 7th International Conference, Proceeedings. Springer Verlag; 1997. p. 499-504, ISBN 3540636315; 9783540636311

1996

• Moerland P. D., Fiesler E., Saxena I. Incorporation of liquid-crystal light valve nonlinearities in optical multilayer neural networks Applied optics 1996;35 (26):5301-5307 [PubMed]
• Thimm G., Moerland P., Fiesler E. The interchangeability of learning rate and gain in backpropagation neural networks Neural computation 1996;8 (2):451-460 [PubMed]