A. Bart PhD publications

2020

• Kinsella Cormac M., Bart Aldert, Deijs Martin, Broekhuizen Patricia, Kaczorowska Joanna, Jebbink Maarten F., van Gool Tom, Cotten Matthew, van der Hoek Lia Entamoeba and Giardia parasites implicated as hosts of CRESS viruses Nature communications 2020;11 (1) [PubMed]

2019

• van Hattem Jarne M., Arcilla Maris S., Schultsz Constance, Bootsma Martin C., Verhaar Nienke, Rebers Sjoerd P., Goorhuis Abraham, Grobusch Martin P., Penders John, de Jong Menno D., van Gool Tom, Bart Aldert, van Genderen Perry J., Melles Damian C., Molhoek Nicky, Oude Lashof Astrid M., Stobberingh Ellen E., Verbrugh Henri A., van Genderen Perry J., Melles Damian C., Molhoek Nicky, Oude Lashof Astrid M., Stobberingh Ellen E., Verbrugh Henri A. Carriage of Blastocystis spp. in travellers - A prospective longitudinal study Travel medicine and infectious disease 2019;27 (Jan-Feb):87-91 [PubMed]

2018

• Leroy Jordan, Cornu Marjorie, Deleplancque Anne-Sophie, Bart Aldert, Loridant S. verine, Fréalle Emilie, Dutoit Emmanuel, Gaillot Olivier, van Gool Tom, Puisieux François, Labalette Pierre, Sendid Boualem Case Report: Ocular Microsporidiosis: Case in a Patient Returning from India and Review of the Literature American journal of tropical medicine and hygiene 2018;99 (1):90-93 [PubMed]
• de Ruiter M. H. T., Stijnis C., Nolte J. W., Bart A., Croonen S. L., de Lange J., Grobusch M. P. Fulminant presentation of oral mucosal leishmaniasis as severe stomatitis and periodontitis Netherlands journal of medicine 2018;76 (1):40-42 [PubMed]
• Schauwvlieghe Alexander F. A. D., de Jonge Nick, van Dijk Karin, Verweij Paul E., Brüggemann Roger J., Biemond Bart J., Bart Aldert, von dem Borne Peter A., Verbon Annelies, van der Beek Martha T., Demandt Astrid M. P., Oudhuis Guy J., Cornelissen Jan J., van der Velden Walter J. F. M., Span Lambert F. R., Kampinga Greetje A., Bruns Anke H., Vonk Alieke G., Haas Pieter–Jan A., Doorduijn Jeanette K., Rijnders Bart J. A. The diagnosis and treatment of invasive aspergillosis in Dutch haematology units facing a rapidly increasing prevalence of azole-resistance. A nationwide survey and rationale for the DB-MSG 002 study protocol Mycoses 2018;61 (9):656-664 [PubMed]

2017

• Özbilgin Ahmet, Harman Mehmet, Karakuş Mehmet, Bart Aldert, Töz Seray, Kurt Özgür, Çavuş İbrahim, Polat Erdal, Gündüz Cumhur, van Gool Tom, Özbel Yusuf Leishmaniasis in Turkey: Visceral and cutaneous leishmaniasis caused by Leishmania donovani in Turkey Acta tropica 2017;173:90-96 [PubMed]
• van Hattem Jarne M., Arcilla Maris S., Grobusch Martin P., Bart Aldert, Bootsma Martin C., van Genderen Perry J., van Gool Tom, Goorhuis Abraham, van Hellemond Jaap J., Molenkamp Richard, Molhoek Nicky, Oude Lashof Astrid M., Stobberingh Ellen E., de Wever Bob, Verbrugh Henri A., Melles Damian C., Penders John, Schultsz Constance, de Jong Menno D. Travel-related acquisition of diarrhoeagenic bacteria, enteral viruses and parasites in a prospective cohort of 98 Dutch travellers Travel medicine and infectious disease 2017;19:33-36 [PubMed]

2016

• van der Auwera Gert, Bart Aldert, Chicharro Carmen, Cortes Sofia, Davidsson Leigh, Di Muccio Trentina, Dujardin Jean-Claude, Felger Ingrid, Paglia Maria Grazia, Grimm Felix, Harms Gundel, Jaffe Charles L., Manser Monika, Ravel Christophe, Robert-Gangneux Florence, Roelfsema Jeroen, Töz Seray, Verweij Jaco J., Chiodini Peter L. Comparison of Leishmania typing results obtained from 16 European clinical laboratories in 2014 Euro surveillance 2016;21 (49):9-19 [PubMed]
• de Wit Marit, Funk Anna L., Moussally Krystel, Nkuba David Aksanti, Siddiqui Ruby, Bil Karla, Piriou Erwan, Bart Aldert, Bahizi Bizoza Patrick, Bousema Teun In vivo efficacy of artesunate-amodiaquine and artemether-lumefantrine for the treatment of uncomplicated falciparum malaria: an open-randomized, non-inferiority clinical trial in South Kivu, Democratic Republic of Congo Malaria journal 2016;15:455 [PubMed]
• Slot Ed, Hogema Boris M., Molier Michel, Bart Aldert, Zaaijer Hans L. Risk Factors and Screening for Trypanosoma cruzi Infection of Dutch Blood Donors PLoS ONE 2016;11 (3):e0151038 [PubMed]

2015

• Wawrzyniak Ivan, Courtine Damien, Osman Marwan, Hubans-Pierlot Christine, Cian Amandine, Nourrisson Céline, Chabe Magali, Poirier Philippe, Bart Aldert, Polonais Valérie, Delgado-Viscogliosi Pilar, El Alaoui Hicham, Belkorchia Abdel, van Gool Tom, Tan Kevin S. W., Ferreira Stéphanie, Viscogliosi Eric, Delbac Frédéric Draft genome sequence of the intestinal parasite Blastocystis subtype 4-isolate WR1 Genomics data 2015;4:22-23 [PubMed]
• Stijnis Kees, Dijkmans Anneke C., Bart Aldert, Brosens Lodewijk A. A., Muntau Birgit, Schoen Christoph, Barth Thomas F., van Gulik Thomas, van Gool Tom, Grobusch Martin P., Tappe Dennis Echinococcus vogeli in immigrant from Suriname to the Netherlands Emerging infectious diseases 2015;21 (3):528-530 [PubMed]
• Lammers A. J. J., Goorhuis A., van de Beek D., Grobusch M. P., Bart A., van Gool T., van Vugt M. Eosinophilia à deux: a brain nagging souvenir from the Philippines Infection 2015;43 (5):615-617 [PubMed]
• Rossen N. G., Bart A., Verhaar N., van Nood E., Kootte R., de Groot P. F., D'Haens G. R., Ponsioen C. Y., van Gool T. Low prevalence of Blastocystis sp. in active ulcerative colitis patients European journal of clinical microbiology & infectious diseases 2015;34 (5):1039-1044 [PubMed]

2014

• Dagci Hande, Kurt Özgür, Demirel Mete, Mandiracioglu Aliye, Aydemir Söhret, Saz Ulas, Bart Aldert, van Gool Tom Epidemiological and diagnostic features of blastocystis infection in symptomatic patients in izmir province, Turkey Iranian journal of parasitology 2014;9 (4):519-529 [PubMed]
• van der Auwera Gert, Ravel Christophe, Verweij Jaco J., Bart Aldert, Schönian Gabriele, Felger Ingrid Evaluation of four single-locus markers for leishmania species discrimination by sequencing Journal of clinical microbiology 2014;52 (4):1098-1104 [PubMed]
• Requena-Méndez Ana, Albajar-Viñas Pere, Angheben Andrea, Chiodini Peter, Gascón Joaquim, Muñoz José, Jackson Yves, Chappuis Francois, Le-Loup Guillaume, Develoux Michel, Zoller Tomas, Stich August, Wirth Margit, Bottieau Emmanuel, Carlier Yves, Muyldermans Gaetan, Quoilin Sophie, Bart Aldert, Ekblom-Kullberg Susanne, Ferrao Ana, Seixas Jorge, García-Rodríguez Magdalena, Hellgren Urban, Björkman Anders Health Policies to Control Chagas Disease Transmission in European Countries PLoS neglected tropical diseases 2014;8 (10):e3245 [PubMed]
• Hodiamont Caspar J., Kager Piet A., Bart Aldert, de Vries Henry J. C., van Thiel Pieter P. A. M., Leenstra Tjalling, de Vries Peter J., van Vugt Michèle, Grobusch Martin P., van Gool Tom Species-directed therapy for leishmaniasis in returning travellers: a comprehensive guide PLoS neglected tropical diseases 2014;8 (5):e2832 [PubMed]
• Martiny D., Bart A., Vandenberg O., Verhaar N., Wentink-Bonnema E., Moens C., van Gool T. Subtype determination of Blastocystis isolates by matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI-TOF MS) European journal of clinical microbiology & infectious diseases 2014;33 (4):529-536 [PubMed]

2013

• Bart Aldert, Wentink-Bonnema Ellen M. S., Gilis Henk, Verhaar Nienke, Wassenaar Carla J. A., van Vugt Michèle, Goorhuis Abraham, van Gool Tom Diagnosis and subtype analysis of Blastocystis sp. in 442 patients in a hospital setting in the Netherlands BMC infectious diseases 2013;13:389 [PubMed]
• Stijnis C., Bart A., Brosens L., van Gool T., Grobusch M., van Gulik T., Roelfsema J., van Thiel P. First case of Echinococcus vogeli infection imported to the Netherlands, January 2013 Euro surveillance 2013;18 (15):20448-25 [PubMed]
• Bart A., van Thiel P. P. A. M., de Vries H. J. C., Hodiamont C. J., van Gool T. Imported leishmaniasis in the Netherlands from 2005 to 2012: epidemiology, diagnostic techniques and sequence-based species typing from 195 patients Euro surveillance 2013;18 (30):20544-21 [PubMed]
• Bart A., van Hellemond J. J., van Genderen P. J., van Gool T. Plasmodium knowlesi infection imported to Germany, January 2013 Euro surveillance 2013;18 (44):23 20619-24 [PubMed]

2012

• Faber William R., Hoekzema Rick, Bart Aldert, Zeegelaar Jim E., de Vries Henry J. C. Cutaneous Leishmaniasis Acquired in Jura, France Emerging infectious diseases 2012;18 (1):183-184 [PubMed]
• Link Lonneke, Bart Aldert, Verhaar Nienke, van Gool Tom, Pronk Marjolijn, Scharnhorst Volkher Molecular Detection of Plasmodium knowlesi in a Dutch Traveler by Real-Time PCR Journal of clinical microbiology 2012;50 (7):2523-2524 [PubMed]

2011

• Bart Aldert, Hodiamont Caspar J., Grobusch Martin P., van den Brink Reneé B. A., Smout André J. P. M., van Gool Tom De ziekte van Chagas in Nederland: een schatting van het aantal patiënten Nederlands tijdschrift voor geneeskunde 2011;155 (18):A3170 [PubMed]
• van Vugt Michèle, Wetsteyn José C., Haverkort Milly, Kolader Marion, Verhaar Nienke, Spanjaard Lodewijk, Grobusch Martin P., Bart Aldert, van Gool Tom New England souvenirs Journal of travel medicine 2011;18 (6):425-426 [PubMed]
• van Thiel Pieter-Paul A. M., van Gool Tom, Faber William R., Leenstra Tjalling, Kager Piet A., Bart Aldert Variation in clinical presentation and genotype of causative Leishmania major strain in cutaneous leishmaniasis in north and south Afghanistan American journal of tropical medicine and hygiene 2011;85 (1):60-63 [PubMed]

2010

• van Thiel Pieter-Paul, Leenstra Tjalling, de Vries Henry J., van der Sluis Allard, van Gool Tom, Krull Alex C., van Vugt Michèle, de Vries Peter J., Zeegelaar Jimmy E., Bart Aldert, van der Meide Wendy F., Schallig Henk D. F. H., Faber William R., Kager Piet A. Cutaneous Leishmaniasis (Leishmania major Infection) in Dutch Troops Deployed in Northern Afghanistan: Epidemiology, Clinical Aspects, and Treatment American journal of tropical medicine and hygiene 2010;83 (6):1295-1300 [PubMed]
• van Thiel Pieter-Paul A. M., van Gool Tom, Kager Piet A., Bart Aldert First Cases of Cutaneous Leishmaniasis Caused by Leishmania (Viannia) naiffi Infection in Surinam American journal of tropical medicine and hygiene 2010;82 (4):588-590 [PubMed]
• van Thiel P. P. A. M., Leenstra T., Kager P. A., de Vries H. J., van Vugt M., van der Meide W. F., Bart A., Zeegelaar J. E., van der Sluis A., Schallig H. D. F. H., van Gool T., Faber W. R., de Vries P. J. Miltefosine Treatment of Leishmania major Infection: An Observational Study Involving Dutch Military Personnel Returning from Northern Afghanistan Clinical infectious diseases 2010;50 (1):80-83 [PubMed]
• van Dijk Karin, Starink Markus V., Bart Aldert, Nijhuis Erik W. P., van der Wal Allard C., van Thiel Pieter P. A. M., de Vries Henry J. C., van Gool Tom The potential of molecular diagnosis of cutaneous ectopic schistosomiasis American journal of tropical medicine and hygiene 2010;83 (4):958-959 [PubMed]

2009

• van der Snoek E. M., Lammers A. M., Kortbeek L. M., Roelfsema J. H., Bart A., Jaspers C. A. J. J. Spontaneous cure of American cutaneous leishmaniasis due to Leishmania naiffi in two Dutch infantry soldiers Clinical and experimental dermatology 2009;34 (8):e889-e891 [PubMed]

2008

• Bart Aldert, Wentink-Bonnema Ellen M., Heddema Edou R., Buijs Jan, van Gool Tom Frequent Occurrence of Human-Associated Microsporidia in Fecal Droppings of Urban Pigeons in Amsterdam, The Netherlands Applied and environmental microbiology 2008;74 (22):7056-7058 [PubMed]
• Bart Aldert, van der Heijden Harold M., Greve Sophie, Speijer Dave, Landman Wil J., van Gool Tom Intragenomic variation in the internal transcribed spacer 1 region of Dientamoeba fragilis as a molecular epidemiological marker Journal of clinical microbiology 2008;46 (10):3270-3275 [PubMed]

2007

• Al Naiemi Nashwan, Heddema Edou R., Bart Aldert, de Jonge Evert, Vandenbroucke-Grauls Christina M., Savelkoul Paul H. M., Duim Birgitta Emergence of multidrug-resistant Gram-negative bacteria during selective decontamination of the digestive tract on an intensive care unit - Authors' response Journal of antimicrobial chemotherapy 2007;60 (2):446 [PubMed]
• Al Naiemi Nashwan Extended-spectrum Beta-lactamases detection and epidemiologyAmsterdam: 2007. 124p. ISBN 9789073838987. [UvA Dissertations Online] University of Amsterdam. (Supervisor: Vandenbroucke-Grauls C. M. J.; Co-supervisors: Bart Aldert, Duim Birgitta)

2006

• Al Naiemi Nashwan, Duim Birgitta, Bart Aldert A CTX-M extended-spectrum beta-lactamase in Pseudomonas aeruginosa and Stenotrophomonas maltophilia Journal of medical microbiology 2006;55 (11):1607-1608 [PubMed]
• van Passel M. W. J. Anomalous DNA in prokaryotic genomes 2006. 153p. ISBN 9789073838536. [UvA Dissertations Online] University of Amsterdam. (Supervisor: Vandenbroucke-Grauls C. M. J. E.; Co-supervisors: van der Ende A., Bart A.)
• Al Naiemi Nashwan, Schipper Kim, Duim Birgitta, Bart Aldert Application of minimal sequence quality values prevents misidentification of the blaSHV type in single bacterial isolates carrying different SHV extended-spectrum beta-lactamase genes Journal of clinical microbiology 2006;44 (5):1896-1898 [PubMed]
• van Passel Mark W. J., Bart Aldert, Luyf Angela C. M., van Kampen Antoine H. C., van der Ende Arie Compositional discordance between prokaryotic plasmids and host chromosomes BMC genomics 2006;7:26 [PubMed]
• Al Naiemi Nashwan, Heddema Edou R., Bart Aldert, de Jonge Evert, Vandenbroucke-Grauls Christina M., Savelkoul Paul H. M., Duim Birgitta Emergence of multidrug-resistant Gram-negative bacteria during selective decontamination of the digestive tract on an intensive care unit Journal of antimicrobial chemotherapy 2006;58 (4):853-856 [PubMed]
• van Passel Mark W. J., Bart Aldert, Luyf Angela C. M., van Kampen Antoine H. C., van der Ende Arie Identification of acquired DNA in Neisseria lactamica FEMS microbiology letters 2006;262 (1):77-84 [PubMed]
• van Passel Mark W. J., van der Ende Arie, Bart Aldert Plasmid diversity in neisseriae Infection and immunity 2006;74 (8):4892-4899 [PubMed]
• van Passel Mark W. J., Kuramae Eiko E., Luyf Angela C. M., Bart Aldert, Boekhout Teun The reach of the genome signature in prokaryotes BMC evolutionary biology 2006;6:84 [PubMed]
• van Thiel P. P. A. M., Faber W. R., de Vries H. J. C., Bart A., van Gool T., Kager P. A. Uw diagnose? Tijdschrift voor infectieziekten 2006;1 (5):206
• al Naiemi N., Bart A., de Jong M. D., Vandenbroucke-Grauls C. M., Rietra P. J. G. M., Debets-Ossenkopp Y. J., Wever P. C., Spanjaard L., Bos A. J., Duim B. Widely distributed and predominant CTX-M extended-spectrum beta-lactamases in Amsterdam, The Netherlands Journal of clinical microbiology 2006;44 (8):3012-3014 [PubMed]

2005

• van Amsterdam Karin, Bart Aldert, van der Ende Arie A Helicobacter pylori TolC efflux pump confers resistance to metronidazole Antimicrobial agents and chemotherapy 2005;49 (4):1477-1482 [PubMed]
• van Passel M. W. J., Bart A., Thygesen H. H., Luyf A. C. M., van Kampen A. H. C., van der Ende A. An acquisition account of genomic islands based on genome signature comparisons BMC genomics 2005;6:163 [PubMed]
• van Passel M. W. J., Bart A., van der Ende A. Default taxonomy and the genomics era Microbiology (Reading, England) 2005;151 (Part 9):2818-2820 [PubMed]
• van Passel M. W. J., Luyf A. C. M., van Kampen A. H. C., Bart A., van der Ende A. Deltarho-web, an online tool to assess composition similarity of individual nucleic acid sequences Bioinformatics (Oxford, England) 2005;21 (13):3053-3055 [PubMed]
• Bart A., van Passel M. W. J., van Amsterdam K., van der Ende A. Direct detection of methylation in genomic DNA Nucleic acids research 2005;33 (14):e124 [PubMed]
• Al Naiemi Nashwan, Duim Birgitta, Savelkoul Paul H. M., Spanjaard Lodewijk, de Jonge Evert, Bart Aldert, Vandenbroucke-Grauls Christina M., de Jong Menno D. Widespread transfer of resistance genes between bacterial species in an intensive care unit: Implications for hospital epidemiology Journal of clinical microbiology 2005;43 (9):4862-4864 [PubMed]

2004

• van Passel M. W. J., Bart A., Waaijer R. J. A., Luyf A. C. M., van Kampen A. H. C., van der Ende A. An in vitro strategy for the selective isolation of anomalous DNA from prokaryotic genomes Nucleic acids research 2004;32 (14):e114 [PubMed]
• van Passel Mark, Bart Aldert, Pannekoek Yvonne, van der Ende Arie Phylogenetic validation of horizontal gene transfer? Nature genetics 2004;36 (10):1028 [PubMed]

2003

• van Loon Sandra, Bart Aldert, den Hertog Erik J., Nikkels Peter G. J., Houwen Roderick H. J., de Schryver Jan E. A. R., Oudshoorn Johanna H. Helicobacter heilmannii gastritis caused by cat to child transmission Journal of pediatric gastroenterology and nutrition 2003;36 (3):407-409 [PubMed]

2002

• Taylor D. L., Bart A., Bowler L. D. Representational difference analysis of cDNA and genome comparisonsin: B. Wren, N. Dorell, editors. Methods in microbiology: vol.33 Functional microbial genomics. Amsterdam: Academic Press; 2002. p. hfst.6, ISBN 9780125215336
• Taylor D. L., Bart A., Bowler L. D. Representational difference analysis of cDNA and genome comparisons METHODS IN MICROBIOLOGY 2002;33:103-120

2001

• Pot R. G., Kusters J. G., Smeets L. C., van Tongeren W., Vandenbroucke-Grauls C. M., Bart A. Interspecies transfer of antibiotic resistance between Helicobacter pylori and Helicobacter acinonychis Antimicrobial agents and chemotherapy 2001;45 (10):2975-2976 [PubMed]
• Bart A., Pannekoek Y., Dankert J., van der Ende A. NmeSI restriction-modification system identified by representational difference analysis of a hypervirulent Neisseria meningitidis strain Infection and immunity 2001;69 (3):1816-1820 [PubMed]
• Bowler L. D., Bart A., van der Ende A. Representational difference analysis Methods in molecular medicine 2001;67:231-255 [PubMed]
• Bart A., Barnabé C., Achtman M., Dankert J., van der Ende A., Tibayrenc M. The population structure of Neisseria meningitidis serogroup A fits the predictions for clonality Infection, genetics and evolution 2001;1 (2):117-122 [PubMed]

2000

• DNA uptake sequences in Helicobacter pylori Microbiology (Reading, England) 2000;146 (6):1255-1256 [PubMed]
• Helicobacter acinonychis eradication leading to the resolution of gastric lesions in tigers Veterinary record 2000;147 (6):164-165 [PubMed]
• Representational difference analysis of Neisseria meningitidis identifies sequences that are specific for the hyper-virulent lineage III clone FEMS microbiology letters 2000;188 (2):111-114 [PubMed]
• Slaughter pigs are commonly infected by closely related but distinct gastric ulcerative lesion-inducing gastrospirilla Journal of clinical microbiology 2000;38 (7):2661-2664 [PubMed]

1999

• Antigenic variation of the class I outer membrane protein in hyperendemic Neisseria meningitidis strains in the netherlands Infection and immunity 1999;67 (8):3842-3846 [PubMed]
• Bart Aldert Genetic variation in Neisseria meningitidis 1999. 115p. ISBN 9789064645471. [UvA Dissertations Online] University of Amsterdam. (Supervisor: Dankert J.; Co-supervisor: van der Ende A.)
• Operator sequences for the regulatory proteins of restriction modification systems Molecular microbiology 1999;31 (4):1277-1278 [PubMed]

1998

• cagA-positive Helicobacter pylori populations in China and The Netherlands are distinct Infection and immunity 1998;66 (5):1822-1826 [PubMed]
• Randomly amplified polymorphic DNA genotyping of serogroup A meningococci yields results similar to those obtained by multilocus enzyme electrophoresis and reveals new genotypes Journal of clinical microbiology 1998;36 (6):1746-1749 [PubMed]