F.M. Vos PhD publications

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Publications PhD F.M. Vos

Position
Research Associate
Main activities
Research
Specialisation
Medical Image Analysis
Focus of research
  • Assessment of Crohn's disease severity

    Inflammatory bowel diseases such as Crohn's disease are a large healthcare problem in the Western World. Grading of Crohn’s disease severity is important to determine the proper treatment strategy and to quantify the response to the treatment.
    Currently, Magnetic Resonance Imaging is widely used for diagnosing and grading luminal Crohn’s disease (CD). Unfortunately, MRI has been shown to be accurate for severe disease cases (91% accuracy), but mediocre for mild disease activity or remission (62% accuracy).
    I aim to create a suite of fundamental tools for accurate assessment of CD severity. It will involve image analysis, classification and visualization algorithms to measure disease severity from MRI.
    I do this research in conjunction with leading clinical groups (University College London Hospital, AMC), technical institutes (ETH Zurich, Zuse Institute Berlin) and industrial partners (Biotronics3D Inc, Vodera Inc). In fact, there are 4 Phd Students, 2 postdocs, 2 research fellows, and a scientific programmer working on the project. It is funded from the European Community’s Seventh Framework Programme as the VIGOR++ Project. I am coordinating the project, which scored 15/15 and ended first of 640 research proposals!
     
  • Identifying biomarkers of neurological disorders using Diffusion Weighted MRI

    Diffusion Tensor MRI (DTI) provides information about changes in the brain's white matter, both physiologically (aging) and pathologically (e.g. Alzheimer's disease). DTI measures the ability of water molecules to move freely in the surrounding tissue. Healthy white matter tracts show high diffusion along and low diffusion across axons. Such anisotropy is measured by DTI. Although pathology is generally characterized by increased isotropy, it is not easily recognized especially due to the lack of a reference.
    My research focuses on identifying deviating structures in DTI data by developing methods that (i) improve tract characterization by explicitly modeling crossing tracts; (ii) establish both spatial and temporal registration; (iii) statistically model changes in white matter structure; (iv) identify spatiotemporal biomarkers..
     
  • Virtual colonoscopy: electronic cleansing and Computer Aided Detection  (CAD) of polyps

    Virtual colonoscopy (also called CT colonography) is a non-invasive method to screen for colonic polyps - the precursors of colon cancer .  
    Fecal remains may mimmick or obscure polyps due to its tissue equivalent intensity. An oral contrast agent ('fecal tagging') makes it distinguishable from the physiologic bowel wall. Over the past years, I have developed several methods for electronic cleansing. Electronic cleansing automatically segments the colon wall in the presence of fecal tagging.
    Also, to assist the radiologist in this time consuming screening task, I have worked on Computer Aided Detection systems for finding polyps.

    I now aim at making CAD work with patients taking a low fiber diet and scanning at a low radiation dose. This would make the whole procedure more patient friendly than it currently is. However, the tagged material may become inhomogeneously mixed with fecal matter and it will form complex structures such as thin layers. Also, there is much more noise in the images due to the low radiation dose. Current electronic cleansing and CAD systems are not designed to handle such data.
     

 

Amsterdam UMC Research Institutes
AMC departments
All publications

2020

  • van Valenberg Willem, Klein Stefan, Vos Frans M., Koolstra Kirsten, van Vliet Lucas J., Poot Dirk H. J. An Efficient Method for Multi-Parameter Mapping in Quantitative MRI Using B-Spline Interpolation IEEE transactions on medical imaging 2020;39 (5):1681-1689 [PubMed]
  • Ambrosini Pierre, Hollemans Eva, Kweldam Charlotte F., Leenders Geert J. L. H. van, Stallinga Sjoerd, Vos Frans Automated detection of cribriform growth patterns in prostate histology images Scientific reports 2020;10 (1) [PubMed]
  • Nagtegaal Martijn, Koken Peter, Amthor Thomas, de Bresser Jeroen, Mädler Burkhard, Vos Frans, Doneva Mariya Myelin water imaging from multi-echo T2 MR relaxometry data using a joint sparsity constraint NeuroImage 2020;219 [PubMed]
  • Arkesteijn G. A. M., Poot D. H. J., Ikram M. A., Niessen W. J., van Vliet L. J., Vernooij M. W., Vos F. M. Orientation Prior and Consistent Model Selection Increase Sensitivity of Tract-Based Spatial Statistics in Crossing-Fiber Regions IEEE transactions on medical imaging 2020;39 (2):308-319 [PubMed]
  • Bazin Pierre-Louis, Nijsse Hannah E., van der Zwaag Wietske, Gallichan Daniel, Alkemade Anneke, Vos Frans M., Forstmann Birte U., Caan Matthan W. A. Sharpness in motion corrected quantitative imaging at 7T NeuroImage 2020;222 [PubMed]
  • Liebrand Luka C., van Wingen Guido A., Vos Frans M., Denys Damiaan, Caan Matthan W. A. Spatial versus angular resolution for tractography-assisted planning of deep brain stimulation NeuroImage. Clinical 2020;25 [PubMed]

2019

  • Zhang Tian, Runge Jurgen H., Lavini Cristina, Stoker Jaap, van Gulik Thomas, Cieslak Kasia P., van Vliet Lucas J., Vos Frans M. A pharmacokinetic model including arrival time for two inputs and compensating for varying applied flip-angle in dynamic gadoxetic acid-enhanced MR imaging PLoS ONE 2019;14 (8) [PubMed]
  • Gollifer R. M., Menys A., Plumb A., Mengoudi K., Puylaert C. A. J., Tielbeek J. A. W., Ponsioen C. Y., Vos F. M., Stoker J., Taylor S. A., Atkinson D. Automated versus subjective assessment of spatial and temporal MRI small bowel motility in Crohn's disease Clinical radiology 2019;74 (10):814 [PubMed]
  • Rassam F, Zhang T, Cieslak K P, Lavini C, Stoker J, Bennink R J, van Gulik T M, van Vliet L J, Runge J H, Vos F M Comparison between dynamic gadoxetate-enhanced MRI and 99mTc-mebrofenin hepatobiliary scintigraphy with SPECT for quantitative assessment of liver function European radiology 2019;29 (9):5063-5072 [PubMed]
  • Puylaert Carl A. J., Tielbeek Jeroen A. W., Schüffler Peter J., Nio C. Yung, Horsthuis Karin, Mearadji Banafsche, Ponsioen Cyriel Y., Vos Frans M., Stoker Jaap Comparison of contrast-enhanced and diffusion-weighted MRI in assessment of the terminal ileum in Crohn’s disease patients ABDOMINAL RADIOLOGY 2019;44 (2):398-405 [PubMed]
  • Bouziane Cheima, Filatova Olena G., Schrantee Anouk, Caan Matthan W. A., Vos Frans M., Reneman Liesbeth White matter by diffusion MRI following methylphenidate treatment: A randomized control trial in males with attention-deficit/hyperactivity disorder Radiology 2019;293 (1):186-192 [PubMed]

2018

  • Li Zhang, van Vliet Lucas J., Stoker Jaap, Vos Frans M. A hybrid optimization strategy for registering images with large local deformations and intensity variations International journal of computer assisted radiology and surgery 2018;13 (3):343-351 [PubMed]
  • Zhang Tian, Wu Zhiyi, Runge Jurgen H., Lavini Cristina, Stoker Jaap, van Gulik Thomas, Cieslak Kasia P., van Vliet Lucas J., Vos Frans M. A hybrid segmentation method for partitioning the liver based on 4D DCE-MR imagesin: Elsa D. Angelini, Bennett A. Landman, editors. Medical Imaging 2018: Image Processing. SPIE; 2018.
  • Filatova Olena G., van Vliet Lucas J., Schouten Alfred C., Kwakkel Gert, van der Helm Frans C. T., Vos Frans M., de Munck Jan, Meskers Carel, Saes Mique, Haring Luuk, Winters Caroline, Andringa Aukje, Hoevenaars Dirk, Fernandes Ines de Castro, Zandvliet Sarah, Daffertshofer Andreas, van Wegen Erwin, Yao Jun, Dewald Julius, Solis-Escalante Teodoro, Yang Yuan, van de Ruit Mark, Vlaar Martijn, Kalogianni Konstantina Comparison of multi-tensor diffusion models' performance for white matter integrity estimation in chronic stroke Frontiers in neuroscience 2018;12 (APR) [PubMed]
  • van Schie Jeroen J. N., Lavini Cristina, van Vliet Lucas J., Kramer Gem, Pieters-van den Bos Indra, Marcus J. T., Stoker Jaap, Vos Frans M. Estimating the arterial input function from dynamic contrast-enhanced MRI data with compensation for flow enhancement (II): Applications in spine diagnostics and assessment of crohn's disease Journal of magnetic resonance imaging 2018;47 (5):1197-1204 [PubMed]
  • van Schie Jeroen J. N., Lavini Cristina, van Vliet Lucas J., Vos Frans M. Estimating the arterial input function from dynamic contrast-enhanced MRI data with compensation for flow enhancement (I): Theory, method, and phantom experiments Journal of magnetic resonance imaging 2018;47 (5):1197-1204 [PubMed]
  • Puylaert Carl A. J. MRI for Crohn's disease: From quantification to automation 2018. ISBN 9789463751216. [UvA Dissertations Online] University of Amsterdam. (Supervisors: Stoker J., van Vliet L. J.; Co-supervisors: Ponsioen C. Y., Vos F. M.)
  • Versteeg Edwin, Vos Frans M., Kwakkel Gert, van der Helm Frans C. T., Arkesteijn Joor A. M., Filatova Olena Probabilistic tractography for complex fiber orientations with automatic model selectionin: Enrico Kaden, Francesco Grussu, Lipeng Ning, Chantal M.W. Tax, Jelle Veraart, editors. Computational Diffusion MRI - MICCAI Workshop, 2017. Springer; 2018. p. 117-128, ISBN 9783319738383
  • Menys Alex, Puylaert Carl, Nolthenius Charlotte E. Tutein, Plumb Andrew A., Makanyanga Jesica, Tielbeek Jeroen, Pendse Doug, Brosens Lodewijk A., Rodriguez-Justo Manuel, Atkinson David, Bhatnagar Gauraang, Vos Frans, Stoker Jaap, Taylor Stuart A. Quantified terminal ileal motility during MR enterography as a biomarker of Crohn disease activity: Prospective multi-institution study Radiology 2018;289 (2):428-435 [PubMed]
  • GollIfer Ruaridh M., Menys Alex, Makanyanga Jesica, Puylaert Carl A. J., Vos Frans M., Stoker Jaap, Atkinson David, Taylor Stuart Andrew Relationship between MrI quantified small bowel motility and abdominal symptoms in Crohn's disease patients-a validation study British journal of radiology 2018;91 (1089) [PubMed]
  • Puylaert Carl A. J., Schüffler Peter J., Naziroglu Robiel E., Tielbeek Jeroen A. W., Li Zhang, Makanyanga Jesica C., Tutein Nolthenius Charlotte J., Nio C. Yung, Pendsé Douglas A., Menys Alex, Ponsioen Cyriel Y., Atkinson David, Forbes Alastair, Buhmann Joachim M., Fuchs Thomas J., Hatzakis Haralambos, van Vliet Lucas J., Stoker Jaap, Taylor Stuart A., Vos Frans M. Semiautomatic Assessment of the Terminal Ileum and Colon in Patients with Crohn Disease Using MRI (the VIGOR++ Project) Academic radiology 2018;25 (8):1038-1045 [PubMed]
  • Tümer Nazlı, Kok Aimee C., Vos Frans M., Streekstra Geert J., Askeland Christian, Tuijthof Gabrielle J. M., Zadpoor Amir A. Three-dimensional registration of freehand-tracked ultrasound to CT images of the talocrural joint Sensors (Basel, Switzerland) 2018;18 (7) [PubMed]

2017

  • Naziroglu Robiel E., Puylaert Carl A. J., Tielbeek Jeroen A. W., Makanyanga Jesica, Menys Alex, Ponsioen Cyriel Y., Hatzakis Haralambos, Taylor Stuart A., Stoker Jaap, van Vliet Lucas J., Vos Frans M. Semi-automatic bowel wall thickness measurements on MR enterography in patients with Crohn's disease British journal of radiology 2017;90 (1074):20160654 [PubMed]
  • Naziroglu Robiël E., van Ravesteijn Vincent F., van Vliet Lucas J., Streekstra Geert J., Vos Frans M. Simulation of scanner- and patient-specific low-dose CT imaging from existing CT images Physica medica 2017;36:12-23 [PubMed]

2016

  • Mahapatra Dwarikanath, Vos Franciscus M., Buhmann Joachim M. Active learning based segmentation of Crohns disease from abdominal MRI Computer methods and programs in biomedicine 2016;128:75-85 [PubMed]
  • Naziroglu Robiel E. Analysis methods for abdominal imaging: Quantifying Crohn's desease activity 2016. 152p. [UvA Dissertations Online] Delft University of Technology: Faculty of Applied Sciences. (Supervisors: van Vliet L. J., Stoker J.; Co-supervisor: Vos F. M.)
  • Li Zhang, Mahapatra Dwarikanath, Tielbeek Jeroen A. W., Stoker Jaap, van Vliet Lucas J., Vos Frans M. Image Registration Based on Autocorrelation of Local Structure IEEE transactions on medical imaging 2016;35 (1):63-75 [PubMed]
  • van Schie Jeroen J. N. Methods for Dynamic Contrast Enhanced MRI 2016. 98p. ISBN 9789462955219. [UvA Dissertations Online] Delft University of Technology: Faculty of Applied Sciences. (Supervisors: van Vliet L. J., Stoker J.; Co-supervisors: Vos F. M., Lavini C.)
  • Yang Jianfei, Poot Dirk H. J., Caan Matthan W. A., Su Tanja, Majoie Charles B. L. M., van Vliet Lucas J., Vos Frans M. Reliable Dual Tensor Model Estimation in Single and Crossing Fibers Based on Jeffreys Prior PLoS ONE 2016;11 (10):e0164336 [PubMed]
  • Su Tanja, Caan Matthan W. A., Wit Ferdinand W. N. M., Schouten Judith, Geurtsen Gert J., Cole James H., Sharp David J., Vos Frans M., Prins Maria, Portegies Peter, Reiss Peter, Majoie Charles B. White matter structure alterations in HIV-1-infected men with sustained suppression of viraemia on treatment AIDS (London, England) 2016;30 (2):311-322 [PubMed]

2015

  • Yang Jianfei Analysis of diffusion MRI: disentangling the entangled brain 2015. 136p. [UvA Dissertations Online] TU Delft: -. (Supervisors: van Vliet L. J., Majoie C. B. L. M.; Co-supervisor: Vos F. M.)
  • Yang Jianfei, Poot Dirk H. J., van Vliet Lucas J., Vos Frans M. Estimation of diffusion properties in three-way fiber crossings without overfitting Physics in medicine and biology 2015;60 (23):9123-9144 [PubMed]
  • Li Zhang, Tielbeek Jeroen A. W., Caan Matthan W. A., Puylaert Carl A. J., Ziech Manon L. W., Nio Chung Y., Stoker Jaap, van Vliet Lucas J., Vos Frans M. Expiration-phase template-based motion correction of free-breathing abdominal dynamic contrast enhanced MRI IEEE transactions on bio-medical engineering 2015;62 (4):1215-1225 [PubMed]
  • van Schie Jeroen J. N., Lavini Cristina, van Vliet Lucas J., Vos Frans M. Feasibility of a fast method for B1-inhomogeneity correction for FSPGR sequences Magnetic resonance imaging 2015;33 (3):312-318 [PubMed]
  • Li Zhang, Van Vliet Lucas J., Stoker Jaap, Vos Frans M. Image registration based on the structure tensor of the local phasein: Martin A. Styner, Sebastien Ourselin, editors. Medical Imaging 2015. SPIE; 2015.
  • Li Zhang Image registration for assessment of Crohn's disease severity 2015. 146p. ISBN 9789462951747. [UvA Dissertations Online] Delft University of Technology: Applied Sciences. (Supervisors: van Vliet L. J., Stoker J.; Co-supervisor: Vos F. M.)

2014

  • Mahapatra Dwarikanath, Schüffler Peter J., Tielbeek Jeroen A.W., Makanyanga Jesica C., Stoker Jaap, Taylor Stuart A., Vos Franciscus M., Buhmann Joachim M. Active learning based segmentation of Crohn's disease using principles of visual saliencyin: 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014. Institute of Electrical and Electronics Engineers Inc.; 2014. p. 226-229
  • Mahapatra Dwarikanath, Schüffler Peter J., Tielbeek Jeroen A.W., Puylaert Carl A.J., Makanyanga Jesica C., Menys Alex, Andriantsimiavona Rado, Stoker Jaap, Taylor Stuart A., Vos Franciscus M., Buhmann Joachim M. Combining multiple expert annotations using semi-supervised learning and graph cuts for Crohn’s disease segmentationin: Hiroyuki Yoshida, Janne J. Näppi, Sanjay Saini, editors. Abdominal Imaging. Springer - Verlag; 2014. p. 139-147
  • Tielbeek Jeroen A. W., Ziech Manon L. W., Li Zhang, Lavini Cristina, Bipat Shandra, Bemelman Willem A., Roelofs Joris J. T. H., Ponsioen Cyriel Y., Vos Frans M., Stoker Jaap Evaluation of conventional, dynamic contrast enhanced and diffusion weighted MRI for quantitative Crohn's disease assessment with histopathology of surgical specimens European radiology 2014;24 (3):619-629 [PubMed]
  • Tielbeek Jeroen Anton Wiliam MRI for grading Crohn's disease 2014. 161p. ISBN 9789088919138. [UvA Dissertations Online] University of Amsterdam. (Supervisors: Stoker J., van Vliet L. J.; Co-supervisors: Ponsioen C. Y., Vos F. M.)
  • Schüffler Peter J., Mahapatra Dwarikanath, Naziroglu Robiel, Li Zhang, Puylaert Carl A.J., Andriantsimiavona Rado, Vos Franciscus M., Pendsé Doug A., Yung Nio C., Stoker Jaap, Taylor Stuart A., Buhmann Joachim M. Semi-automatic Crohn’s disease severity estimation on MR imagingin: Hiroyuki Yoshida, Janne J. Näppi, Sanjay Saini, editors. Abdominal Imaging. Springer - Verlag; 2014. p. 128-138

2013

  • Mahapatra Dwarikanath, Schueffler Peter, Tielbeek Jeroen A. W., Buhmann Joachim M., Vos Franciscus M. A supervised learning approach for Crohn's disease detection using higher-order image statistics and a novel shape asymmetry measure Journal of digital imaging 2013;26 (5):920-931 [PubMed]
  • de Raedt S., Stilling M., van de Giessen M., Streekstra G. J., Vos F. M., Hansen T. B. A three-dimensional analysis of osteoarthritic changes in the thumb carpometacarpal joint Journal of hand surgery, European volume 2013;38 (8):851-859 [PubMed]
  • Mahapatra Dwarikanath, Schueffler Peter, Tielbeek Jeroen, Makanyanga Jesica, Stoker Jaap, Taylor Stuart, Vos Frans, Buhmann Joachim Automatic Detection and Segmentation of Crohn's Disease Tissues From Abdominal MRI IEEE transactions on medical imaging 2013;32 (12):2332-2347 [PubMed]
  • van Ravesteijn Vincent F., Boellaard Thierry N., van der Paardt Marije P., Serlie Iwo W. O., de Haan Margriet C., Stoker Jaap, van Vliet Lucas J., Vos Frans M. Electronic cleansing for 24-h limited bowel preparation CT colonography using principal curvature flow IEEE transactions on bio-medical engineering 2013;60 (11):3036-3045 [PubMed]
  • Tielbeek Jeroen A. W., Makanyanga Jesica C., Bipat Shandra, Pendsé Doug A., Nio C. Yung, Vos Frans M., Taylor Stuart A., Stoker Jaap Grading Crohn disease activity with MRI: interobserver variability of MRI features, MRI scoring of severity, and correlation with Crohn disease endoscopic index of severity AJR. American journal of roentgenology 2013;201 (6):1220-1228 [PubMed]
  • de Groot Marius, Vernooij Meike W., Klein Stefan, Ikram M. Arfan, Vos Frans M., Smith Stephen M., Niessen Wiro J., Andersson Jesper L. R. Improving alignment in Tract-based spatial statistics: evaluation and optimization of image registration NeuroImage 2013;76:400-411 [PubMed]

2012

  • Li Z., Caan M. W. A., Ziech M. L. W., Stoker J., van Vliet L. J., Vos F. M. 3D Non-Rigid Motion Correction of Free-Breathing Abdominal DCE-MRI Datain: H. Yoshida, G. Sakas, M. G. Linguraru, editors. Abdominal Imaging: Computational and Clinical Applications. S.l.: Springer; 2012. p. 44-50, ISBN 9783642285578
  • van de Giessen Martijn, Foumani Mahyar, Vos Frans M., Strackee Simon D., Maas Mario, van Vliet Lucas J., Grimbergen Cornelis A., Streekstra Geert J. A 4D Statistical Model of Wrist Bone Motion Patterns IEEE transactions on medical imaging 2012;31 (3):613-625 [PubMed]
  • Tielbeek Jeroen A. W., Vos Frans M., Stoker Jaap A computer-assisted model for detection of MRI signs of Crohn's disease activity: future or fiction? Abdominal imaging 2012;37 (6):967-973 [PubMed]
  • van de Giessen Martijn, Vos Frans M., Grimbergen Cornelis A., van Vliet Lucas J., Streekstra Geert J. An efficient and robust algorithm for parallel groupwise registration of bone surfaces Medical image computing and computer-assisted intervention 2012;15 (Part 3):164-171 [PubMed]
  • Vos Franciscus M., Tielbeek Jeroen A. W., Naziroglu Robiel E., Li Zhang, Schueffler Peter, Mahapatra Dwarikanath, Wiebel Alexander, Lavini C., Buhmann Joachim M., Hege Hans-Christian, Stoker Jaap, van Vliet Lucas J. Computational modeling for assessment of IBD: to be or not to be? Conference Proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society 2012;2012:3974-3977 [PubMed]
  • Caan M. W. A., Shahand S., Vos F. M., van Kampen A. H. C., Olabarriaga S. D. Evolution of grid-based services for Diffusion Tensor Image analysis FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF GRID COMPUTING AND ESCIENCE 2012;28 (8):1194-1204
  • van de Giessen Martijn, Vos Frans M., Grimbergen Cornelis A., van Vliet Lucas J., Streekstra Geert J. Groupwise rigid registration of wrist bones Medical image computing and computer-assisted intervention 2012;15 (Part 2):155-162 [PubMed]
  • Wiebel A., Vos F. M., Foerster D., Hege H. WYSIWYP: What You See Is What You Pick IEEE transactions on visualization and computer graphics 2012;18 (12):2236-2244 [PubMed]

2011

  • Vermeer K. A., Lo B., Zhou Q., Vos F. M., Vossepoel A. M., Lemij H. G. Event-based progression detection strategies using scanning laser polarimetry images of the human retina Computers in biology and medicine 2011;41 (9):857-864 [PubMed]
  • van de Giessen Martijn, de Raedt Sepp, Stilling Maiken, Hansen Torben B., Maas Mario, Streekstra Geert J., van Vliet Lucas J., Vos Frans M. Localized component analysis for arthritis detection in the trapeziometacarpal joint Medical image computing and computer-assisted intervention 2011;14 (2):360-367 [PubMed]
  • Caan Matthan W. A., van Vliet Lucas J., Majoie Charles B. L. M., van der Graaff Maaike M., Grimbergen C. A., Vos Frans M. Nonrigid point set matching of white matter tracts for diffusion tensor image analysis IEEE transactions on bio-medical engineering 2011;58 (9):2431-2440 [PubMed]
  • Liedenbaum M. H., Denters M. J., Zijta F. M., van Ravesteijn V. F., Bipat S., Vos F. M., Dekker E., Stoker J. Reducing the oral contrast dose in CT colonography: evaluation of faecal tagging quality and patient acceptance Clinical radiology 2011;66 (1):30-37 [PubMed]
  • van de Giessen M. Statistical Modeling of shape and motion of the wrist bonesDelft: F&N Boekservice Amsterdam; 2011. 116p. ISBN 9789491098246. [UvA Dissertations Online] TU Delft: Electrical Engineering. (Supervisors: van Vliet L. J., Grimbergen C. A.; Co-supervisors: Vos F., Streekstra G. J.)
  • van der Graaff Maaike M., Sage Caroline A., Caan Matthan W. A., Akkerman Erik M., Lavini Cristina, Majoie Charles B., Nederveen Aart J., Zwinderman Aeilko H., Vos Frans, Brugman Frans, van den Berg Leonard H., de Rijk Maarten C., van Doorn Pieter A., van Hecke Wim, Peeters Ronald R., Robberecht Wim, Sunaert Stefan, de Visser Marianne Upper and extra-motoneuron involvement in early motoneuron disease: a diffusion tensor imaging study Brain 2011;134 (Part 4):1211-1228 [PubMed]

2010

  • van Noorden S., Caan M. W. A., van der Graaf M., van Vliet L. J., Vos F. M. A comparison of the cingulum tract in ALS-B patients and controls using kernel matching Medical image computing and computer-assisted intervention 2010;13 (2):249-256
  • Caan Matthan W. A., Khedoe Ganesh, Poot Dirk, den Dekker Arjan, Olabarriaga Silvia, Grimbergen Kees, van Vliet Lucas, Vos Frans Adaptive noise filtering for accurate and precise diffusion estimation in fiber crossings Medical image computing and computer-assisted intervention 2010;13 (Part 1):167-174 [PubMed]
  • Grigorescu S., Nevo S. T., Liedenbaum M. H., Truyen R., Stoker J., van Vliet L. J., Vos F. M. Automated detection and segmentation of large lesions in CT colonography IEEE transactions on bio-medical engineering 2010;57 (3):675-684 [PubMed]
  • van Ravesteijn Vincent F., van Wijk Cees, Vos Frans M., Truyen Roel, Peters Joost F., Stoker Jaap, van Vliet Lucas J. Computer-aided detection of polyps in CT colonography using logistic regression IEEE transactions on medical imaging 2010;29 (1):120-131 [PubMed]
  • van Wijk Cees, van Ravesteijn Vincent F., Vos Frans M., van Vliet Lucas J. Detection and segmentation of colonic polyps on implicit isosurfaces by second principal curvature flow IEEE transactions on medical imaging 2010;29 (3):688-698 [PubMed]
  • Serlie Iwo W. O., Vos Frans M., Truyen Roel, Post Frits H., Stoker Jaap, van Vliet Lucas J. Electronic cleansing for computed tomography (CT) colonography using a scale-invariant three-material model IEEE transactions on bio-medical engineering 2010;57 (6):1306-1317 [PubMed]
  • Caan Matthan W. A., Khedoe H. Ganesh, Poot Dirk H. J., den Dekker Arjan J., Olabarriaga Silvia D., Grimbergen Kees A., van Vliet Lucas J., Vos Frans M. Estimation of Diffusion Properties in Crossing Fiber Bundles IEEE transactions on medical imaging 2010;29 (8):1504-1515 [PubMed]
  • Caan M. W. A., Vos F. M., van Kampen A. H. C., Olabarriaga S. D., van Vliet L. J. Gridifying a Diffusion Tensor Imaging Analysis Pipelinein: Manish Parashar, Rajkumar Buyyar, editors. CCGrid 2010 : 10th IEEE/ACM International Conference on Cluster, Cloud and Grid Computing : 17-20 May, Melbourne, Australia. Los Alamitos: IEEE Computer Society; 2010. p. 733-738, ISBN 9780769540399
  • Liedenbaum Marjolein H., Denters Maaike J., de Vries Ayso H., van Ravesteijn Vincent F., Bipat Shandra, Vos Frans M., Dekker Evelien, Stoker Jaap Low-Fiber Diet in Limited Bowel Preparation for CT Colonography: Influence on Image Quality and Patient Acceptance AJR. American journal of roentgenology 2010;195 (1):W31-W37 [PubMed]
  • de Vries Ayso H., Bipat Shandra, Dekker Evelien, Liedenbaum Marjolein H., Florie Jasper, Fockens Paul, van der Kraan Roel, Mathus-Vliegen Elizabeth M., Reitsma Johannes B., Truyen Roel, Vos Frans M., Zwinderman Aeilko H., Stoker Jaap Polyp measurement based on CT colonography and colonoscopy: variability and systematic differences European radiology 2010;20 (6):1404-1413 [PubMed]
  • van de Giessen Martijn, Foumani Mahyar, Streekstra Geert J., Strackee Simon D., Maas Mario, van Vliet Lucas J., Grimbergen Kees A., Vos Frans M. Statistical descriptions of scaphoid and lunate bone shapes Journal of biomechanics 2010;43 (8):1463-1469 [PubMed]

2009

  • van Ravensteijn V. F., Zhao L., Botha C. P., Post F. H., Vos F. M., van Vliet L. J. Combining mesh, volume, and streamline representations for polyp detection in CT colonography IEEE transactions on medical imaging 2009;28 (12):907-910
  • van de Giessen Martijn, Streekstra Geert J., Strackee Simon D., Maas Mario, Grimbergen Kees A., van Vliet Lucas J., Vos Frans M. Constrained registration of the wrist joint IEEE transactions on medical imaging 2009;28 (12):1861-1869 [PubMed]
  • Caan M. W. A., Sage C. A., van der Graaf M. M., Grimbergen C. A., Sunaert S., van Vliet L. J., Vos F. M. Dual Tensor Atlas Generation based on a Cohort of Coregistered non-HARDI Datasets Medical image computing and computer-assisted intervention 2009;Part I (LNCS 5761):869-876
  • van Ravesteijn V. F., Vos F. M., van Vliet L. J. Recognition of protruding objects in highly structured surroundings by structural inference LECTURE NOTES IN COMPUTER SCIENCE 2009;5574:41-50
  • Aukema Eline J., Caan Matthan W. A., Oudhuis Nienke, Majoie Charles B. L. M., Vos Frans M., Reneman Liesbeth, Last Bob F., Grootenhuis Martha A., Schouten-van Meeteren Antoinette Y. N. White matter fractional anisotropy correlates with speed of processing and motor speed in young childhood cancer survivors International journal of radiation oncology, biology, physics 2009;74 (3):837-843 [PubMed]

2008

  • Serlie Iwo W. O., de Vries Ayso H., van Vliet Lucas J., Nio Chung Y., Truyen Roel, Stoker Jaap, Vos Franciscus M. Lesion Conspicuity and Efficiency of CT Colonography with Electronic Cleansing Based on a Three-Material Transition Model AJR. American journal of roentgenology 2008;191 (5):1493-1502 [PubMed]
  • van Wijk C., Florie J., Nio C. Y., Dekker E., de Vries A. H., Venema H. W., van Vliet L. J., Stoker J., Vos F. M. Protrusion method for automated estimation of polyp size on CT colonography AJR. American journal of roentgenology 2008;190 (5):1279-1285 [PubMed]
  • de Vries A. H., Vos F. M., Serlie I. W. O., Stoker J. Unfolded Cube Projection of the Colonin: E. Neri, D. Caramella, C. Bartolozzi, editors. Image Processing in Radiology. Berlin Heidelberg New York: Springer; 2008. p. 269-275, ISBN 9783540259152

2007

  • van Gelder Rogier E., Florie Jasper, Nio C. Yung, Jensch Sebastiaan, de Jager Steven W., Vos Frans M., Venema Henk W., Bartelsman Joep F., Reitsma Johannes B., Bossuyt Patrick M. M., Laméris Johan S., Stoker Jaap A comparison of primary two- and three-dimensional methods to review CT colonography European radiology 2007;17 (5):1181-1192 [PubMed]
  • Serlie Iwo W. O., Vos Frans M., Truyen Roel, Post Frits H., van Vliet Lucas J. Classifying CT image data into material fractions by a scale and rotation invariant edge model IEEE transactions on image processing 2007;16 (12):2891-2904 [PubMed]
  • van de Giesen M., Vos F. M., Strackee S. D., Maas M., Grimbergen C. A., van Vliet L. J., Streekstra G. J. Constrained registration of multiple rigid objects in close proximity: application in the wrist jointin: A. Anonymous, editors. 4th IEEE International symposium on Biomedical imaging : From nano to macro, ISBI 2007. Piscataway, NJ: IEEE; 2007. p. 704-707, ISBN 9781424406715
  • Caan Matthan, de Vries Anne Willem, Khedoe Ganesh, Akkerman Erik, van Vliet Lucas, Grimbergen Kees, Vos Frans Generating fiber crossing phantoms out of experimental DWIsin: Nicholas Ayache, Sébastien Ourselin, Anthony Maeder, editors. Medical image computing and computer-assisted intervention - MICCAI 2007. 10th International conference, Brisbane, Australia, Oktober/November 2007, Proceedings, Part 1. Berlin Heidelberg: Springer; 2007. p. 169-176, ISBN 9783540757566
  • Vos F. M., Caan M. W. A., Vermeer K. A., Majoie C. B. L. M., den Heeten G. J., van Vliet L. J. Linear and kernel fisher discriminant analysis for studying diffusion tensor images in schizophreniain: A. Anonymous, editors. 4th IEEE International symposium on Biomedical imaging : From nano to macro, ISBI 2007. Piscataway, NJ: IEEE; 2007. p. 764-767, ISBN 9781424406715
  • Caan M. W. A., Vermeer K. A., van Vliet L. J., Grimbergen C. A., Vos F. M. Pruning datasets in discriminant analysis: a DTI study to schizophreniain: A. Anonymous, editors. 4th IEEE International symposium on Biomedical imaging : From nano to macro, ISBI 2007. Piscataway, NJ: IEEE; 2007. p. 1340-1344, ISBN 9781424406715
  • Vermeer K. A., Reus N. J., Vos F. M., Lemij H. G., Vossepoel A. M. Split bundle detection in polarimetric images of the human retinal nerve fiber layer Methods of information in medicine 2007;46 (4):425-431 [PubMed]

2006

  • Vermeer K. A., Reus N. J., Vos F. M., Vossepoel A. M., Lemij H. G. Automated detection of wedge-shaped defects in polarimetric images of the retinal nerve fibre layer Eye (London, England) 2006;20 (7):776-784 [PubMed]
  • van Wijk Cees, van Ravesteijn Vincent F., Vos Frank M., Truyen Reel, de Vries Ayso H., Stoker Jaap, van Vliet Lucas J. Detection of protrusions in curved folded surfaces applied to automated polyp detection in CT Colonography LECTURE NOTES IN COMPUTER SCIENCE 2006;4191:471-478
  • Zhao Lingxiao, Botha Charl P., Bescos Javier O., Truyen Roel, Vos Frans M., Post Frits H. Lines of curvature for polyp detection in virtual colonoscopy IEEE transactions on visualization and computer graphics 2006;12 (5):885-892 [PubMed]
  • Vermeer Koen A., Vos Frans M., Lo Barrick, Zhou Qienyuan, Lemij Hans G., Vossepoel Albert M., van Vliet Lucas J. Modeling of scanning laser polarimetry images of the human retina for progression detection of glaucoma IEEE transactions on medical imaging 2006;25 (5):517-528 [PubMed]
  • Caan M. W. A., Vermeer K. A., van Vliet L. J., Majoie C. B. L. M., Peters B. D., den Heeten G. J., Vos F. M. Shaving diffusion tensor images in discriminant analysis: a study into schizophrenia Medical image analysis 2006;10 (6):841-849 [PubMed]

2005

  • Blaas J., Botha C. P., Peters B., Vos F. M., Post F. H. Fast and reproducible fiber bundle selection in DTI visualization IEEE VISUALIZATION 2005;149 (18):1001-1006
  • de Bruin P. W., Dercksen V. J., Post F. H., Vossepoel A. M., Streekstra G. J., Vos F. M. Interactive 3D segmentation using connected orthogonal contours Computers in biology and medicine 2005;35 (4):329-346 [PubMed]
  • Suprijanto S., Vogel M. W., Vos F. M., Vrooman H. A., Vossepoel A. M. Inter-frame motion correction for MR thermometryin: J. Duncan, G. Gerig, editors. MICCAI 2005, LNCS 3749. Berlin Heidelberg: Springer Verlag; 2005. p. 580-588
  • Dijkers J. J., van Wijk C., Vos F. M., Florie J., Nio Y. C., Venema H. W., Truyen R., van Vliet L. J. Segmentation and size measurement of polyps in CT colonography LECTURE NOTES IN COMPUTER SCIENCE 2005;3749:712-719
  • Dijkers J. J., van Wijk C., Vos F. M., Florie J., Nio Y. C., Venema H. W., Truyen R., van Vliet L. J. Segmentation and size measurement of polyps in CT colonographyin: J. Duncan, G. Gerig, editors. MICCAI 2005, LNCS 3749. Berlin Heidelberg: Springer Verlag; 2005. p. 712-719

2004

  • Vermeer K. A., Vos F. M., Lemij H. G., Vossepoel A. M. A model based method for retinal blood vessel detection Computers in biology and medicine 2004;34 (3):209-219 [PubMed]
  • van Gelder Rogier E., Venema Henk W., Florie Jasper, Nio C. Yung, Serlie Iwo W. O., Schutter Michiel P., van Rijn Jeroen C., Vos Frans M., Glas Afina S., Bossuyt Patrick M. M., Bartelsman Joep F. W., Laméris Johan S., Stoker Jaap CT colonography: Feasibility of substantial dose reduction - Comparison of medium to very low doses in identical patients Radiology 2004;232 (2):611-620 [PubMed]
  • van Wijk C., Truyen R., van Gelder R. E., van Vliet L. J., Vos F. M. On normalized convolution to measure curvature features for automatic polyp detection LECTURE NOTES IN COMPUTER SCIENCE 2004;3216 (Part 1):200-208
  • Vos F. M., van Gelder R. E., Serlie I. W. O., Florie J., Nio C. Y., Post F. H., Truyen R., Vossepoel A. M., Stoker J. Virtual colonoscopyin: J. Dankelman, C. A. Grimbergen, H. G. Stassen, editors. Engineering for patient safety: issues in minimally invasive procedures. Mahwah, NJ: Lawrence Erlbaum; 2004. p. 206-225, ISBN 9780805849059

2003

  • Serlie I. W. O., Truyen Roel, Florie Jasper, Post Frits H., van Vliet Lucas, Vos Frans Computed cleansing for virtual colonoscopy using a three-material transition model LECTURE NOTES IN COMPUTER SCIENCE 2003;2879:175-183
  • Vermeer K. A., Vos F. M., Lemij H. G., Vossepoel A. M. Detecting glaucomatous wedge shaped defects in polarimetric images Medical image analysis 2003;7 (4):503-511 [PubMed]
  • Vermeer K. A., Reus N. J., Vos F. M., Lemij H. G., Vossepoel A. M. Progression detection of glaucoma from polarimetric images LECTURE NOTES IN COMPUTER SCIENCE 2003;2879:611-619
  • Vos Frans M., van Gelder Rogier E., Serlie Iwo W. O., Florie Jasper, Nio C. Yung, Glas Afina S., Post Frits H., Truyen Roel, Gerritsen Frans A., Stoker Jaap Three-dimensional display modes for CT colonography: Conventional 3D virtual colonoscopy versus unfolded cube projection Radiology 2003;228 (3):878-885 [PubMed]

2002

  • van Gelder Rogier E., Venema Henk W., Serlie Iwo W. O., Nio C. Yung, Determann Rogier M., Tipker Corinne A., Vos Frans M., Glas Afina S., Bartelsman Joep F. W., Bossuyt Patrick M. M., Laméris Johan S., Stoker Jaap CT colonography at different radiation dose levels: Feasibility of dose reduction Radiology 2002;224 (1):25-33 [PubMed]
  • Vermeer K., Vos F., Lemij H., Vossepoel A. Detecting wedge shaped defects in polarimetric images of the retinal nerve fiber layer LECTURE NOTES IN COMPUTER SCIENCE 2002;2488:777-784
  • Vos F. M., Spoelder H. J. W., Germans D. M., Hofman R., Bal H. Real-time, adaptive measurement of corneal shapes COMPUTING IN SCIENCE & ENGINEERING 2002;4 (2):66-76

2001

  • Vos F. M., Serlie I., Van Gelder R. E., Post F. H., Truyen R., Gerritsen F. A., Stoker J., Vossepoel A. M. A new visualization method for virtual colonoscopyin: Wiro J. Niessen, Max A. Viergever, editors. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2001 - 4th International Conference, Proceedings. Springer - Verlag; 2001. p. 645-654, ISBN 3540426973; 9783540454687
  • Vos Frans, Serlie Iwo, Van Gelder Rogier, Stoker J., Vrooman Henri, Post Frits A review of technical advances in virtual colonoscopyin: MEDINFO 2001 - Proceedings of the 10th World Congress on Medical Informatics. IOS Press; 2001. p. 938-942, ISBN 1586031945; 9781586031947
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