Prof. A.H.C. van Kampen PhD publications

2020

• Molenaars Marte, Janssens Georges E., Williams Evan G., Jongejan Aldo, Lan Jiayi, Rabot Sylvie, Joly Fatima, Moerland Perry D., Schomakers Bauke V., Lezzerini Marco, Liu Yasmine J., McCormick Mark A., Kennedy Brian K., van Weeghel Michel, van Kampen Antoine H. C., Aebersold Ruedi, MacInnes Alyson W., Houtkooper Riekelt H. A Conserved Mito-Cytosolic Translational Balance Links Two Longevity Pathways Cell metabolism 2020;31 (3):549-563.e7 [PubMed]
• Ferdinandusse Sacha, McWalter Kirsty, te Brinke Heleen, IJlst Lodewijk, Mooijer Petra M., Ruiter Jos P. N., van Lint Alida E. M., Pras-Raves Mia, Wever Eric, Millan Francisca, Guillen Sacoto Maria J., Begtrup Amber, Tarnopolsky Mark, Brady Lauren, Ladda Roger L., Sell Susan L., Nowak Catherine B., Douglas Jessica, Tian Cuixia, Ulm Elizabeth, Perlman Seth, Drack Arlene V., Chong Karen, Martin Nicole, Brault Jennifer, Brokamp Elly, Toro Camilo, Gahl William A., Macnamara Ellen F., Wolfe Lynne, Alejandro Mercedes E., Azamian Mahshid S., Bacino Carlos A., Balasubramanyam Ashok, Burrage Lindsay C., Chao Hsiao-Tuan, Clark Gary D., Craigen William J., Dai Hongzheng, Dhar Shweta U., Emrick Lisa T., Goldman Alica M., Hanchard Neil A., Jamal Fariha, Karaviti Lefkothea, Zwijnenburg Petra J. G., van Kampen Antoine H. C., Wanders Ronald J. A., Waterham Hans R., Vaz Frédéric M. An autosomal dominant neurological disorder caused by de novo variants in FAR1 resulting in uncontrolled synthesis of ether lipids Genetics in medicine 2020 [PubMed]
• Soleimani Dodaran Maryam, Borgoni Simone, Sofyall Emre, Verschure Pernette J., Wiemann Stefan, Moerland Perry D., van Kampen Antoine H. C. Candidate methylation sites associated with endocrine therapy resistance in ER+/HER2- breast cancer BMC cancer 2020;20 (1) [PubMed]
• Darwisch Warda, von Spangenberg Marino, Lehmann Jana, Singin Öznur, Deubert Geralt, Kühl Sandra, Roos Johannes, Horstmann Heinz, Körber Christoph, Hoppe Simone, Zheng Hongwei, Kuner Thomas, Pras-Raves Mia L., van Kampen Antoine H. C., Waterham Hans R., Schwarz Kathrin V., Okun J. rgen G., Schultz Christian, Vaz Frédéric M., Islinger Markus Cerebellar and hepatic alterations in ACBD5-deficient mice are associated with unexpected, distinct alterations in cellular lipid homeostasis Communications Biology 2020;3 (1) [PubMed]
• Staps Pippa, Rizzo William B., Vaz Frédéric M., Bugiani Marianna, Giera Martin, Heijs Bram, van Kampen Antoine H. C., Pras-Raves Mia L., Breur Marjolein, Groen Annemieke, Ferdinandusse Sacha, van der Graaf Marinette, van Goethem Gert, Lammens Martin, Wevers Ron A., Willemsen Michèl A. A. P. Disturbed brain ether lipid metabolism and histology in Sjögren-Larsson syndrome Journal of inherited metabolic disease 2020;43 (6):1265-1278 [PubMed]
• Hasdemir Dicle, van den Berg Robert A., van Kampen Antoine, Smilde Age K. Modeling adaptive response profiles in a vaccine clinical trial BMC medical research methodology 2020;20 (1):191 [PubMed]
• Richmond Phillip A., van der Kloet Frans, Vaz Frederic M., Lin David, Uzozie Anuli, Graham Emma, Kobor Michael, Mostafavi Sara, Moerland Perry D., Lange Philipp F., van Kampen Antoine H. C., Wasserman Wyeth W., Engelen Marc, Kemp Stephan, van Karnebeek Clara D. M. Multi-Omic Approach to Identify Phenotypic Modifiers Underlying Cerebral Demyelination in X-Linked Adrenoleukodystrophy Frontiers in cell and developmental biology 2020;8 [PubMed]
• Vroman Heleen, Balzaretti Giulia, Belderbos Robert A., Klarenbeek Paul L., van Nimwegen Menno, Bezemer Koen, Cornelissen Robin, Niewold Ilse T. G., van Schaik Barbera D., van Kampen Antione H., Aerts Joachim G. J. V., de Vries Niek, Hendriks Rudi W. T cell receptor repertoire characteristics both before and following immunotherapy correlate with clinical response in mesothelioma Journal for immunotherapy of cancer 2020;8 (1) [PubMed]
• Borgoni Simone, Sofyalı Emre, Soleimani Maryam, Wilhelm Heike, Müller-Decker Karin, Will Rainer, Noronha Ashish, Beumers Lukas, Verschure Pernette J., Yarden Yosef, Magnani Luca, van Kampen Antoine H. C., Moerland Perry D., Wiemann Stefan Time-resolved profiling reveals atf3 as a novel mediator of endocrine resistance in breast cancer Cancers 2020;12 (10):1-19 [PubMed]

2019

• Reiniers M. J., de Haan L., Weijer R., Wiggers J. K., Jongejan A., Moerland P. D., Alles L. K., van Kampen A. H. C., van Gulik T. M., Heger M., van Golen R. F. Effect of preoperative biliary drainage on cholestasis-associated inflammatory and fibrotic gene signatures in perihilar cholangiocarcinoma British journal of surgery 2019;106 (1):55-58 [PubMed]
• Warrington Nicole M., Beaumont Robin N., Horikoshi Momoko, Day Felix R., Helgeland Øyvind, Laurin Charles, Bacelis Jonas, Peng Shouneng, Hao Ke, Feenstra Bjarke, Wood Andrew R., Mahajan Anubha, Tyrrell Jessica, Robertson Neil R., Rayner N. William, Qiao Zhen, Moen Gunn-Helen, Vaudel Marc, Marsit Carmen J., Chen Jia, Nodzenski Michael, Schnurr Theresia M., Zafarmand Mohammad H., Bradfield Jonathan P., Grarup Niels, Kooijman Marjolein N., Li-Gao Ruifang, Geller Frank, Ahluwalia Tarunveer S., Paternoster Lavinia, Rueedi Rico, Huikari Ville, Hottenga Jouke-Jan, Lyytikäinen Leo-Pekka, Cavadino Alana, Metrustry Sarah, Cousminer Diana L., Wu Ying, Thiering Elisabeth, Wang Carol A., Have Christian T., Vilor-Tejedor Natalia, Joshi Peter K., Painter Jodie N., Ntalla Ioanna, van Leeuwen Elisabeth M., van Kampen Antoine H. C., van Schaik Barbera D. C., Rosendaal Frits R., Vrijkotte Tanja G. M., Perry John R. B., Evans David M., Freathy Rachel M. Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors Nature genetics 2019;51 (5):804-814 [PubMed]
• Vaz Frédéric M., McDermott John H., Alders Mariëlle, Wortmann Saskia B., Kölker Stefan, Pras-Raves Mia L., Vervaart Martin A. T., van Lenthe Henk, Luyf Angela C. M., Elfrink Hyung L., Metcalfe Kay, Cuvertino Sara, Clayton Peter E., Yarwood Rebecca, Lowe Martin P., Lovell Simon, Rogers Richard C., van Kampen Antoine H. C., Ruiter Jos P. N., Wanders Ronald J. A., Ferdinandusse Sacha, van Weeghel Michel, Engelen Marc, Banka Siddharth Mutations in PCYT2 disrupt etherlipid biosynthesis and cause a complex hereditary spastic paraplegia Brain 2019;142 (11):3382-3397 [PubMed]
• Vergroesen Rochelle D., Slot Linda M., van Schaik Barbera D. C., Koning Marvyn T., Rispens Theo, van Kampen Antoine H. C., Toes René E. M., Scherer Hans U. N-Glycosylation Site Analysis of Citrullinated Antigen-Specific B-Cell Receptors Indicates Alternative Selection Pathways During Autoreactive B-Cell Development Frontiers in immunology 2019;10:2092 [PubMed]
• Pollastro Sabrina, Klarenbeek Paul L., Doorenspleet Marieke E., van Schaik Barbera D. C., Esveldt Rebecca E. E., Thurlings Rogier M., Boumans Maria J. H., Gerlag Danielle M., Tak Paul P., Vos Koen, Baas Frank, van Kampen Antoine H. C., de Vries Niek Non-response to rituximab therapy in rheumatoid arthritis is associated with incomplete disruption of the B cell receptor repertoire Annals of the rheumatic diseases 2019;78 (10):1339-1345 [PubMed]

2018

• Herzog Katharina, Pras-Raves Mia L., Ferdinandusse Sacha, Vervaart Martin A. T., Luyf Angela C. M., van Kampen Antoine H. C., Wanders Ronald J. A., Waterham Hans R., Vaz Frédéric M. Functional characterisation of peroxisomal β-oxidation disorders in fibroblasts using lipidomics Journal of inherited metabolic disease 2018;41 (3):479–487 [PubMed]
• Musters Anne, Klarenbeek Paul L., Doorenspleet Marieke E., Balzaretti Giulia, Esveldt Rebecca E. E., van Schaik Barbera D. C., Jongejan Aldo, Tas Sander W., van Kampen Antoine H. C., Baas Frank, de Vries Niek In rheumatoid arthritis, synovitis at different inflammatory sites is dominated by shared but patient-specific T cell clones Journal of immunology (Baltimore, Md. 2018;201 (2):417-422 [PubMed]
• Herzog Katharina, Pras-Raves Mia L., Ferdinandusse Sacha, Vervaart Martin A. T., Luyf Angela C. M., van Kampen Antoine H. C., Wanders Ronald J. A., Waterham Hans R., Vaz Frédéric M. Plasma lipidomics as a diagnostic tool for peroxisomal disorders Journal of inherited metabolic disease 2018;41 (3):489–498 [PubMed]

2017

• Gao Arwen W., Chatzispyrou Iliana A., Kamble Rashmi, Liu Yasmine J., Herzog Katharina, Smith Reuben L., van Lenthe Henk, Vervaart Martin A. T., van Cruchten Arno, Luyf Angela C., van Kampen Antoine, Pras-Raves Mia L., Vaz Frédéric M., Houtkooper Riekelt H. A sensitive mass spectrometry platform identifies metabolic changes of life history traits in C-elegans Scientific reports 2017;7 (1):2408 [PubMed]
• Smith Reuben L., Tan Josephine M. E., Jonker Martijs J., Jongejan Aldo, Buissink Thomas, Veldhuijzen Steve, van Kampen Antoine H. C., Brul Stanley, van der Spek Hans Beyond the polymerase-γ theory: Production of ROS as a mode of NRTI-induced mitochondrial toxicity PLoS ONE 2017;12 (11):e0187424 [PubMed]
• Reshetova Polina, van Schaik Barbera D. C., Klarenbeek Paul L., Doorenspleet Marieke E., Esveldt Rebecca E. E., Tak Paul-Peter, Guikema Jeroen E. J., de Vries Niek, van Kampen Antoine H. C. Computational Model Reveals Limited Correlation between Germinal Center B-Cell Subclone Abundancy and Affinity: Implications for Repertoire Sequencing Frontiers in immunology 2017;8:221 [PubMed]
• Tak Paul P., Doorenspleet Marieke E., de Hair Maria J. H., Klarenbeek Paul L., van Beers-Tas Marian H., van Kampen Antoine H. C., van Schaardenburg Dirkjan, Gerlag Danielle M., Baas Frank, de Vries Niek Dominant B cell receptor clones in peripheral blood predict onset of arthritis in individuals at risk for rheumatoid arthritis Annals of the rheumatic diseases 2017;76 (11):1924-1930 [PubMed]
• Klaassen Ingeborg, de Vries Ewout W., Vogels Ilse M. C., van Kampen Antoine H. C., Bosscha Machteld I., Steel David H. W., van Noorden Cornelis J. F., Lesnik-Oberstein Sarit Y., Schlingemann Reinier O. Identification of proteins associated with clinical and pathological features of proliferative diabetic retinopathy in vitreous and fibrovascular membranes PLoS ONE 2017;12 (11):e0187304 [PubMed]
• Weijer Ruud, Clavier Séverine, Zaal Esther A., Pijls Maud M. E., van Kooten Robert T., Vermaas Klaas, Leen René, Jongejan Aldo, Moerland Perry D., van Kampen Antoine H. C., van Kuilenburg André B. P., Berkers Celia R., Lemeer Simone, Heger Michal Multi-OMIC profiling of survival and metabolic signaling networks in cells subjected to photodynamic therapy Cellular and molecular life sciences 2017;74 (6):1133-1151 [PubMed]
• van Groningen Tim, Koster Jan, Valentijn Linda J., Zwijnenburg Danny A., Akogul Nurdan, Hasselt Nancy E., Broekmans Marloes, Haneveld Franciska, Nowakowska Natalia E., Bras Johannes, van Noesel Carel J. M., Jongejan Aldo, van Kampen Antoine H., Koster Linda, Baas Frank, van Dijk-Kerkhoven Lianne, Huizer-Smit Margriet, Lecca Maria C., Chan Alvin, Lakeman Arjan, Molenaar Piet, Volckmann Richard, Westerhout Ellen M., Hamdi Mohamed, van Sluis Peter G., Ebus Marli E., Molenaar Jan J., Tytgat Godelieve A., Westerman Bart A., van Nes Johan, Versteeg Rogier Neuroblastoma is composed of two super-enhancer-associated differentiation states Nature genetics 2017;49 (8):1261-1266 [PubMed]
• Doorenspleet M. E., Westera L., Peters C. P., Hakvoort T. B. M., Esveldt R. E., Vogels E., van Kampen A. H. C., Baas F., Buskens C., Bemelman W. A., D'Haens G., Ponsioen C. Y., te Velde A. A., de Vries N. [=Niek], van den Brink G. R. Profoundly Expanded T-cell Clones in the Inflamed and Uninflamed Intestine of Patients With Crohn's Disease Journal of Crohn s & colitis 2017;11 (7):831-839 [PubMed]
• Zhao J., Hakvoort T. B. M., Jongejan A., Ruijter J. M., van Kampen A. H. C., Lamers W. H. Unexpected regulation of miRNA abundance during adaptation of early-somite mouse embryos to diabetic pregnancy Biochemical and biophysical research communications 2017;482 (4):1013-1018 [PubMed]
• Reshetova Polina Use of prior knowledge in biological systems modelling 2017. 129p. [UvA Dissertations Online] University of Amsterdam. (Supervisors: van Kampen A. H. C., Smilde A. K.; Co-supervisor: Westerhuis J. A.)

2016

• Potze L., Di Franco S., Grandela C., Pras-Raves M. L., Picavet D. I., van Veen H. A., van Lenthe H., Mullauer F. B., van der Wel N. N., Luyf A., van Kampen A. H. C., Kemp S., Everts V., Kessler J. H., Vaz F. M., Medema J. P. Betulinic acid induces a novel cell death pathway that depends on cardiolipin modification Oncogene 2016;35 (4):427-437 [PubMed]
• Slot Linda M., Hoogeboom Robbert, Smit Laura A., Wormhoudt Thera A. M., Biemond Bart J., Oud Monique E. C. M., Schilder-Tol Esther J. M., Mulder André B., Jongejan Aldo, van Kampen Antoine H. C., Kluin Philip M., Guikema Jeroen E. J., Bende Richard J., van Noesel Carel J. M. B-Lymphoblastic Lymphomas Evolving from Follicular Lymphomas Co-Express Surrogate Light Chains and Mutated Gamma Heavy Chains American journal of pathology 2016;186 (12):3273-3284 [PubMed]
• Raemy E., Montessuit S., Pierredon S., van Kampen A. H., Vaz F. M., Martinou J.-C. Cardiolipin or MTCH2 can serve as tBID receptors during apoptosis Cell death and differentiation 2016;23 (7):1165-1174 [PubMed]
• Nandal Umesh K., van Kampen Antoine H. C., Moerland Perry D. compendiumdb: an R package for retrieval and storage of functional genomics data Bioinformatics (Oxford, England) 2016;32 (18):2856-2857 [PubMed]
• Lu Ya-Wen, Galbraith Laura, Herndon Jenny D., Lu Ya-Lin, Pras-Raves Mia, Vervaart Martin, van Kampen Antoine, Luyf Angela, Koehler Carla M., McCaffery J. Michael, Gottlieb Eyal, Vaz Frederic M., Claypool Steven M. Defining functional classes of Barth syndrome mutation in humans Human molecular genetics 2016;25 (9):1754-1770 [PubMed]
• Zhao Jing, Hakvoort Theodorus B. M., Willemsen A. Marcel, Jongejan Aldo, Sokolovic Milka, Bradley Edward J., de Boer Vincent C. J., Baas Frank, van Kampen Antoine H. C., Lamers Wouter H. Effect of Hyperglycemia on Gene Expression during Early Organogenesis in Mice PLoS ONE 2016;11 (7):e0158035 [PubMed]
• te Velde Anje A., Bezema Tjitske, van Kampen Antoine H. C., Kraneveld Aletta D., 't Hart Bert A., van Middendorp Henriet, Hack Erik C., van Montfrans Joris M., Belzer Clara, Jans-Beken Lilian, Pieters Raymond H., Knipping Karen, Huber Machteld, Boots Annemieke M. H., Garssen Johan, Radstake Tim R., Evers Andrea W. M., Prakken Berent J., Joosten Irma Embracing Complexity beyond Systems Medicine: A New Approach to Chronic Immune Disorders Frontiers in immunology 2016;7:587 [PubMed]
• Herzog Katharina, Pras-Raves Mia L., Vervaart Martin A. T., Luyf Angela C. M., van Kampen Antoine H. C., Wanders Ronald J. A., Waterham Hans R., Vaz Frédéric M. Lipidomic analysis of fibroblasts from Zellweger spectrum disorder patients identifies disease-specific phospholipid ratios Journal of lipid research 2016;57 (8):1447-1454 [PubMed]
• van Kampen Antoine H. C., Moerland Perry D. Taking Bioinformatics to Systems Medicine Methods in molecular biology (Clifton, N.J.) 2016;1386:17-41 [PubMed]
• Harwig Alex, Jongejan Aldo, van Kampen Antoine H. C., Berkhout Ben, Das Atze T. Tat-dependent production of an HIV-1 TAR-encoded miRNA-like small RNA Nucleic acids research 2016;44 (9):4340-4353 [PubMed]

2015

• Shahand Shayan, Benabdelkader Ammar, Jaghoori Mohammad Mahdi, al Mourabit Mostapha, Huguet Jordi, Caan Matthan W. A., van Kampen Antoine H. C., Olabarriaga Silvia D. A data-centric neuroscience gateway: design, implementation, and experiences CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE 2015;27 (2):489-506
• Nandal Umesh K., Vlietstra Wytze J., Byrman Carsten, Jeeninga Rienk E., Ringrose Jeffrey H., van Kampen Antoine H. C., Speijer Dave, Moerland Perry D. Candidate prioritization for low-abundant differentially expressed proteins in 2D-DIGE datasets BMC bioinformatics 2015;16 (1):25 [PubMed]
• Remmerswaal Ester B. M., Klarenbeek Paul L., Alves Nuno L., Doorenspleet Marieke E., van Schaik Barbera D. C., Esveldt Rebecca E. E., Idu Mirza M., van Leeuwen Ester M. M., van der Bom-Baylon Nelly, van Kampen Antoine H. C., Koch Sven D., Pircher Hanspeter, Bemelman Frederike J., ten Brinke Anja, Baas Frank, ten Berge Ineke J. M., van Lier Rene A. W., de Vries Niek Clonal evolution of CD8+ T cell responses against latent viruses: relationship among phenotype, localization, and function Journal of virology 2015;89 (1):568-580 [PubMed]
• Harwig Alex, Herrera-Carrillo Elena, Jongejan Aldo, van Kampen Antonius Hubertus, Berkhout Ben Deep Sequence Analysis of AgoshRNA Processing Reveals 3' A Addition and Trimming Molecular therapy. Nucleic acids 2015;4:e247 [PubMed]
• Weijer Ruud, Broekgaarden Mans, van Golen Rowan F., Bulle Esther, Nieuwenhuis Esther, Jongejan Aldo, Moerland Perry D., van Kampen Antoine H. C., van Gulik Thomas M., Heger Michal Low-power photodynamic therapy induces survival signaling in perihilar cholangiocarcinoma cells BMC cancer 2015;15 (1):1014 [PubMed]
• Liu Ying Poi, Karg Margarete, Harwig Alex, Herrera-Carrillo Elena, Jongejan Aldo, van Kampen Antoine, Berkhout Ben Mechanistic insights on the Dicer-independent AGO2-mediated processing of AgoshRNAs RNA biology 2015;12 (1):92-100 [PubMed]
• Willemsen A. Marcel, Hendrickx Diana M., Hoefsloot Huub C. J., Hendriks Margriet M. W. B., Wahl S. Aljoscha, Teusink Bas, Smilde Age K., van Kampen Antoine H. C. MetDFBA: incorporating time-resolved metabolomics measurements into dynamic flux balance analysis Molecular bioSystems 2015;11 (1):137-145 [PubMed]
• Vaz Frédéric M., Pras-Raves Mia, Bootsma Albert H., van Kampen Antoine H. C. Principles and practice of lipidomics Journal of inherited metabolic disease 2015;38 (1):41-52 [PubMed]
• Shahand Shayan, van Kampen Antoine H. C., Olabarriaga Silvia Delgado Science Gateway Canvas: A business reference model for Science Gatewaysin: Shantenu Jha, Daniel S. Katz, Jon Weissman, editors. SCREAM '15 Proceedings of the 1st Workshop on The Science of Cyberinfrastructure: Research, Experience, Applications and Models. New York: ACM; 2015. p. 45-52, ISBN 9781450335669
• Shahand Shayan Science gateways for biomedical big data analysis 2015. 178p. ISBN 9789461826060. [UvA Dissertations Online] University of Amsterdam. (Supervisor: van Kampen A. H. C.; Co-supervisor: Olabarriaga S. D.)
• Klarenbeek Paul L., Doorenspleet Marieke E., Esveldt Rebecca E. E., van Schaik Barbera D. C., Lardy Neubury, van Kampen Antoine H. C., Tak Paul P., Plenge Robert M., Baas Frank, de Bakker Paul I. W., de Vries Niek Somatic Variation of T-Cell Receptor Genes Strongly Associate with HLA Class Restriction PLoS ONE 2015;10 (10):e0140815 [PubMed]
• Reshetova Polina, Smilde Age K., Westerhuis Johan A., van Kampen Antoine H. C. Using Petri nets for experimental design in a multi-organ elimination pathway Computers in biology and medicine 2015;63:19-27 [PubMed]
• Canuti Marta, van Beveren Nico J. M., Jazaeri Farsani Seyed Mohammad, de Vries Michel, Deijs Martin, Jebbink Maarten F., Zaaijer Hans L., van Schaik Barbera D. C., van Kampen Antoine H. C., van der Kuyl Antoinette C., de Haan Lieuwe, Storosum Jitschak G., van der Hoek Lia Viral metagenomics in drug-naïve, first-onset schizophrenia patients with prominent negative symptoms Psychiatry research 2015;229 (3):678-684 [PubMed]

2014

• Backer Ronald A., Helbig Christina, Gentek Rebecca, Kent Andrew, Laidlaw Brian J., Dominguez Claudia X., de Souza Yevan S., van Trierum Stella E., van Beek Ruud, Rimmelzwaan Guus F., ten Brinke Anja, Willemsen A. Marcel, van Kampen Antoine H. C., Kaech Susan M., Blander J. Magarian, van Gisbergen Klaas, Amsen Derk A central role for Notch in effector CD8(+) T cell differentiation Nature immunology 2014;15 (12):1143-1151 [PubMed]
• Shahand Shayan, Jaghoori Mohammad Mahdi, Benabdelkader Ammar, Font-Calvo Juan Luis, Huguet Jordi, Caan Matthan W. A., van Kampen Antoine H. C., Olabarriaga Sílvia D. Computational Neuroscience. Gateway: A science Gateway Based on the WS-PGRADE/gUSEin: Peter Kacsuk, editors. Science Gateways for Distributed Computing Infrastructures. Budapest: Springer; 2014. p. 139-149, ISBN 9783319112671
• van Schaik Barbera, Klarenbeek Paul, Doorenspleet Marieke, van Kampen Antoine, Moody D. Branch, de Vries Niek, van Rhijn Ildiko Discovery of invariant T cells by next-generation sequencing of the human TCR α-chain repertoire Journal of immunology (Baltimore, Md. 2014;193 (10):5338-5344 [PubMed]
• Stobbe Miranda D., Jansen Gerbert A., Moerland Perry D., van Kampen Antoine H. C. Knowledge representation in metabolic pathway databases Briefings in bioinformatics 2014;15 (3):455-470 [PubMed]
• Houten Sander M., Denis Simone, te Brinke Heleen, Jongejan Aldo, van Kampen Antoine H. C., Bradley Edward J., Baas Frank, Hennekam Raoul C. M., Millington David S., Young Sarah P., Frazier Dianne M., Gucsavas-Calikoglu Muge, Wanders Ronald J. A. Mitochondrial NADP(H) deficiency due to a mutation in NADK2 causes dienoyl-CoA reductase deficiency with hyperlysinemia Human molecular genetics 2014;23 (18):5009-5016 [PubMed]
• Cordeddu Viviana, Redeker Bert, Stellacci Emilia, Jongejan Aldo, Fragale Alessandra, Bradley Ted E. J., Anselmi Massimiliano, Ciolfi Andrea, Cecchetti Serena, Muto Valentina, Bernardini Laura, Azage Meron, Carvalho Daniel R., Espay Alberto J., Male Alison, Molin Anna-Maja, Posmyk Renata, Battisti Carla, Casertano Alberto, Melis Daniela, van Kampen Antoine, Baas Frank, Mannens Marcel M., Bocchinfuso Gianfranco, Stella Lorenzo, Tartaglia Marco, Hennekam Raoul C. Mutations in ZBTB20 cause Primrose syndrome Nature genetics 2014;46 (8):815-817 [PubMed]
• Cobos Jiménez Viviana, Willemsen Antonius M., Bradley Edward J., Baas Frank, van Kampen Antoine H. C., Kootstra Neeltje A. Next-generation sequencing of microRNAs in primary human polarized macrophages Genomics data 2014;2:181-183 [PubMed]
• Cobos Jiménez Viviana, Bradley Edward J., Willemsen Antonius M., van Kampen Antoine H. C., Baas Frank, Kootstra Neeltje A. Next-generation sequencing of microRNAs uncovers expression signatures in polarized macrophages Physiological genomics 2014;46 (3):91-103 [PubMed]
• Doorenspleet M. E., Klarenbeek P. L., de Hair M. J. H., van Schaik B. D. C., Esveldt R. E. E., van Kampen A. H. C., Gerlag D. M., Musters A. [=Anne], Baas F., Tak P. P., de Vries N. [=Niek] Rheumatoid arthritis synovial tissue harbours dominant B-cell and plasma-cell clones associated with autoreactivity Annals of the rheumatic diseases 2014;73 (4):756-762 [PubMed]
• Piet Jurgen R., Geldhoff Madelijn, van Schaik Barbera D. C., Brouwer Matthijs C., Valls Seron Mercedes, Jakobs Marja E., Schipper Kim, Pannekoek Yvonne, Zwinderman Aeilko H., van der Poll Tom, van Kampen Antoine H. C., Baas Frank, van der Ende Arie, van de Beek Diederik Streptococcus pneumoniae arginine synthesis genes promote growth and virulence in pneumococcal meningitis Journal of infectious diseases 2014;209 (11):1781-1791 [PubMed]
• Reshetova Polina, Smilde Age K., van Kampen Antoine H. C., Westerhuis Johan A. Use of prior knowledge for the analysis of high-throughput transcriptomics and metabolomics data BMC systems biology 2014;8 (Suppl. 2):S2 [PubMed]

2013

• Shahand Shayan, Benabdelkader Ammar, Huguet Jordi, Jaghouri Mahdi, Santcroos Mark, al Mourabit Mostapha, Groot Paul F. C., Caan Matthan W. A., van Kampen Antoine H. C., Olabarriaga Sílvia D. A Data-Centric Science Gateway for Computational Neurosciencein: Tamas Kiss, editors. IWSG 2013 : International Workshop on Science Gateways : Proceedings of the 5th International Workshop on Science Gateways : Zurich, Switzerland, 3-5 June, 2013. Clermont‐Ferrand: CEUR-WS.org; 2013. p. 12
• Madougou Souley, Shahand Shayan, Santcroos Mark, Schaik Barbara, Benabdelkader Ammar, Kampen Antoine, Olabarriaga Silvia Characterizing workflow-based activity on a production e-infrastructure using provenance data FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF GRID COMPUTING AND ESCIENCE 2013;29 (8):1931-1942
• Stobbe Miranda D., Swertz Morris A., Thiele Ines, Rengaw Trebor, van Kampen Antoine H. C., Moerland Perry D. Consensus and conflict cards for metabolic pathway databases BMC systems biology 2013;7 (1):50 [PubMed]
• Olabarriaga Silvia D., Jaghoori Mohammad Mahdi, Korkhov Vladimir, van Schaik Barbera, van Kampen Antoine Understanding workflows for distributed computing: nitty-gritty detailsin: Johan Montagnat, Ian Taylor, editors. WORKS '13 : Proceedings of the 8th Workshop on Workflows in Support of Large-Scale Science. New York: ACM; 2013. p. 68-76, ISBN 9781450325028

2012

• Shahand Shayan, Santcroos Mark, van Kampen Antoine H. C., Olabarriaga Silvia Delgado A Grid-Enabled Gateway for Biomedical Data Analysis JOURNAL OF GRID COMPUTING 2012;10 (4):725-742
• van Schaik Barbera D. C., Santcroos Mark, Korkhov Vladimir, Jongejan Aldo, Willemsen Marcel, van Kampen Antoine H. C., Olabarriaga Silvia D. Challenges in DNA sequence analysis on a production gridin: A. Anonymous, editors. EGI Community Forum 2012 / EMI Second Technical Conference. S.l.: s.n.; 2012. p. 1-19
• Klarenbeek P. L., Remmerswaal E. B. M., ten Berge I. J. M., Doorenspleet M. E., van Schaik B. D. C., Esveldt R. E. E., Koch S. D., ten Brinke A., van Kampen A. H. C., Bemelman F. J., Tak P. P., Baas F., de Vries N. [=Niek], van Lier R. A. W. Deep sequencing of antiviral T-cell responses to HCMV and EBV in humans reveals a stable repertoire that is maintained for many years PLoS pathogens 2012;8 (9):e1002889 [PubMed]
• Schopman Nick C. T., Willemsen Marcel, Liu Ying Poi, Bradley Ted, van Kampen Antoine, Baas Frank, Berkhout Ben, Haasnoot Joost Deep sequencing of virus-infected cells reveals HIV-encoded small RNAs Nucleic acids research 2012;40 (1):414-427 [PubMed]
• Caan M. W. A., Shahand S., Vos F. M., van Kampen A. H. C., Olabarriaga S. D. Evolution of grid-based services for Diffusion Tensor Image analysis FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF GRID COMPUTING AND ESCIENCE 2012;28 (8):1194-1204
• van Houdt Jeroen K. J., Nowakowska Beata Anna, Sousa Sérgio B., van Schaik Barbera D. C., Seuntjens Eve, Avonce Nelson, Sifrim Alejandro, Abdul-Rahman Omar A., van den Boogaard Marie-José H., Bottani Armand, Castori Marco, Cormier-Daire Valérie, Deardorff Matthew A., Filges Isabel, Fryer Alan, Fryns Jean-Pierre, Gana Simone, Garavelli Livia, Gillessen-Kaesbach Gabriele, Hall Bryan D., Horn Denise, Huylebroeck Danny, Klapecki Jakub, Krajewska-Walasek Malgorzata, Kuechler Alma, Lines Matthew A., Maas Saskia, Macdermot Kay D., McKee Shane, Magee Alex, de Man Stella A., Moreau Yves, Morice-Picard Fanny, Obersztyn Ewa, Pilch Jacek, Rosser Elizabeth, Shannon Nora, Stolte-Dijkstra Irene, van Dijck Patrick, Vilain Catheline, Vogels Annick, Wakeling Emma, Wieczorek Dagmar, Wilson Louise, Zuffardi Orsetta, van Kampen Antoine H. C., Devriendt Koenraad, Hennekam Raoul, Vermeesch Joris Robert Heterozygous missense mutations in SMARCA2 cause Nicolaides-Baraitser syndrome Nature genetics 2012;44 (4):445-U261 [PubMed]
• Stobbe Miranda D., Houten Sander M., van Kampen Antoine H. C., Wanders Ronald J. A., Moerland Perry D. Improving the description of metabolic networks: the TCA cycle as example FASEB journal 2012;26 (9):3625-3636 [PubMed]
• Klarenbeek P. L., de Hair M. J. H., Doorenspleet M. E., van Schaik B. D. C., Esveldt R. E. E., van de Sande M. G. H., Cantaert T., Gerlag D. M., Baeten D., van Kampen A. H. C., Baas F., Tak P. P., de Vries N. [=Niek] Inflamed target tissue provides a specific niche for highly expanded T-cell clones in early human autoimmune disease Annals of the rheumatic diseases 2012;71 (6):1088-1093 [PubMed]
• Shahand Shayan, Caan Matthan W. A., van Kampen Antoine H. C., Olabarriaga Sílvia D. Integrated support for neuroscience research: from study design to publication Studies in health technology and informatics 2012;175:195-204 [PubMed]
• Mouw Evert, van't Noordende Guido, van Kampen Antoine H. C., Louter Baas, Santcroos Mark, Olabarriaga Silvia D. Legal constraints on genetic data processing in European grids Studies in health technology and informatics 2012;175:49-58 [PubMed]
• Marquering Henk, Engelberts Jeroen, Groot Paul, Majoie Charles, Beenen Ludo, van Kampen Antoine, Olabarriaga Silvia D. Optimization and Parallelization of the Matched Masked Bone Elimination Method for CTAin: Johan Montagnat, editors. Proceedings of the DCICTIA-MICCAI 2012 Workshop : Data- and Compute-Intensive Clinical and Translational Imaging Applications. S.l.: s.n.; 2012. p. 31-40
• de Vries Michel, Oude Munnink Bas B., Deijs Martin, Canuti Marta, Koekkoek Sylvie M., Molenkamp Richard, Bakker Margreet, Jurriaans Suzanne, van Schaik Barbera D. C., Luyf Angela C., Olabarriaga Silvia D., van Kampen Antoine H. C., van der Hoek Lia Performance of VIDISCA-454 in Feces-Suspensions and Serum Viruses 2012;4 (8):1328-1334 [PubMed]
• Madougou Souley, Santcroos Mark, Benabdelkader Ammar, van Schaik Barbera D. C., Shahand Shayan, Korkhov Vladimir, van Kampen Antoine H. C., Olabarriaga Sílvia D. Provenance for distributed biomedical workflow execution Studies in health technology and informatics 2012;175:91-100 [PubMed]
• Schopman Nick C. T., van Montfort Thijs, Willemsen Marcel, Knoepfel Stefanie A., Pollakis Georgios, van Kampen Antoine, Sanders Rogier W., Haasnoot Joost, Berkhout Ben Selective packaging of cellular miRNAs in HIV-1 particles Virus research 2012;169 (2):438-447 [PubMed]
• Stobbe Miranda D. The road to knowledge: from biology to databases and back again 2012. 168p. [UvA Dissertations Online] University of Amsterdam. (Supervisor: van Kampen A. H. C.; Co-supervisor: Moerland P. D.)

2011

• Benabdelkader A., Santcroos M., Madougou S., van Kampen A. H. C., Olabarriaga S. D. A Provenance Approach to Trace Scientific Experiments on a Grid Infrastructurein: Dieter Kranzlmüller, null et al, editors. eScienceW 2011 : The Seventh IEEE International Conference on e-Science Workshops : Stockholm, Sweden 5–8 December 2011. Los Alamitos: IEEE; 2011. p. 134-141, ISBN 9780769545981
• Peeters Annelies, Fraisl Peter, van den Berg Sjoerd, Ver Loren van Themaat Emiel, van Kampen Antoine, Rider Mark H., Takemori Hiroshi, van Dijk Ko Willems, van Veldhoven Paul P., Carmeliet Peter, Baes Myriam Carbohydrate metabolism is perturbed in peroxisome-deficient hepatocytes due to mitochondrial dysfunction, AMP-activated protein kinase (AMPK) activation, and peroxisome proliferator-activated receptor γ coactivator 1α (PGC-1α) suppression Journal of biological chemistry 2011;286 (49):42162-42179 [PubMed]
• Stobbe Miranda D., Houten Sander M., Jansen Gerbert A., van Kampen Antoine H. C., Moerland Perry D. Critical assessment of human metabolic pathway databases: a stepping stone for future integration BMC systems biology 2011;5 (1):165 [PubMed]
• Mohammed Y., Shahand S., Korkhov V., Luyf A. C. M., van Schaik B. D. C., Caan M. W. A., van Kampen A. H. C., Palmblad M., Olabarriaga S. D. Data Decomposition in Biomedical e-Science Applicationsin: Dieter Kranzlmüller, null et al, editors. eScienceW 2011 : The Seventh IEEE International Conference on e-Science Workshops : Stockholm, Sweden 5–8 December 2011. Los Alamitos: IEEE; 2011. p. 158-165, ISBN 9780769545981
• Huis In 't Veld Robert Antonius Gerhardus, Willemsen Antonius Marcellinus, van Kampen Antonius Hubertus Cornelis, Bradley Edward John, Baas Frank, Pannekoek Yvonne, van der Ende Arie Deep sequencing whole transcriptome exploration of the σE regulon in Neisseria meningitidis PLoS ONE 2011;6 (12):e29002 [PubMed]
• Piet J. R., Huis in 't Veld R. A. G., van Schaik B. D. C., van Kampen A. H. C., Baas F., van de Beek D., Pannekoek Y., van der Ende A. Genome sequence of Neisseria meningitidis serogroup B strain H44/76 Journal of bacteriology 2011;193 (9):2371-2372 [PubMed]
• Hakvoort Theodorus B. M., Moerland Perry D., Frijters Raoul, Sokolovic Aleksandar, Labruyere Wilhelmina T., Vermeulen Jacqueline L. M., Ver Loren van Themaat Emiel, Breit Timo M., Wittink Floyd R. A., van Kampen Antoine H. C., Verhoeven Arthur J., Lamers Wouter H., Sokolovic Milka Interorgan Coordination of the Murine Adaptive Response to Fasting Journal of biological chemistry 2011;286 (18):16332-16343 [PubMed]
• Ritz Katja, van Schaik Barbera D. C., Jakobs Marja E., Aronica Eleonora, Tijssen Marina A., van Kampen Antoine H. C., Baas Frank Looking ultra deep: short identical sequences and transcriptional slippage Genomics 2011;98 (2):90-95 [PubMed]
• Ritz Katja, van Schaik Barbera Dc, Jakobs Marja E., van Kampen Antoine H., Aronica Eleonora, Tijssen Marina A., Baas Frank SGCE isoform characterization and expression in human brain: implications for myoclonus-dystonia pathogenesis? European journal of human genetics 2011;19 (4):438-444 [PubMed]

2010

• Caan M. W. A., Vos F. M., van Kampen A. H. C., Olabarriaga S. D., van Vliet L. J. Gridifying a Diffusion Tensor Imaging Analysis Pipelinein: Manish Parashar, Rajkumar Buyyar, editors. CCGrid 2010 : 10th IEEE/ACM International Conference on Cluster, Cloud and Grid Computing : 17-20 May, Melbourne, Australia. Los Alamitos: IEEE Computer Society; 2010. p. 733-738, ISBN 9780769540399
• Gwadry-Sridhar Femida, Olabarriaga Silvia D., van Kampen Antoine, Bauer Michael, Solomonides Tony Hitting the ground running: Healthgrid deployment and adoption Studies in health technology and informatics 2010;159:40-51 [PubMed]
• Klarenbeek Paul L., Tak Paul P., van Schaik Barbera D. C., Zwinderman Aeilko H., Jakobs Marja E., Zhang Zhuoli, van Kampen Antoine H. C., van Lier René A. W., Baas Frank, de Vries Niek Human T-cell memory consists mainly of unexpanded clones Immunology letters 2010;133 (1):42-48 [PubMed]
• Luyf Angela C. M., van Schaik Barbera D. C., de Vries Michel, Baas Frank, van Kampen Antoine H. C., Olabarriaga Silvia D. Initial steps towards a production platform for DNA sequence analysis on the grid BMC bioinformatics 2010;11 (1):598 [PubMed]

2009

• van Hooff Sander R., Koster Jan, Hulsen Tim, van Schaik Barbera D. C., Roos Marco, van Batenburg Marcel F., Versteeg Rogier, van Kampen Antoine H. C. The Construction of Genome-Based Transcriptional Units Omics 2009;13 (2):105-114 [PubMed]

2008

• Lagarde S. M., Ver Loren van Themaat P. E., Moerland P. D., Gilhuijs-Pederson L. A., ten Kate F. J. W., Reitsma P. H., van Kampen A. H. C., Zwinderman A. H., Baas F., van Lanschot J. J. B. Analysis of Gene Expression Identifies Differentially Expressed Genes and Pathways Associated with Lymphatic Dissemination in Patients with Adenocarcinoma of the Esophagus Annals of surgical oncology 2008;15 (12):3459-3470 [PubMed]
• Martens Katrin, Ver Loren van Themaat Emiel, van Batenburg Marinus F., Heinäniemi Merja, Huyghe Steven, van Hummelen Paul, Carlberg Carsten, van Veldhoven Paul P., van Kampen Antoine, Baes Myriam Coordinate induction of PPAR alpha and SREBP2 in multifunctional protein 2 deficient mice BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS 2008;1781 (11-12):694-702 [PubMed]
• Biewenga Petra, Buist Marrije R., Moerland Perry D., van Thernaat Emiel Ver Loren, van Kampen Antoine H. C., ten Kate Fiebo J. W., Baas Frank Gene expression in early stage cervical cancer Gynecologic oncology 2008;108 (3):520-526 [PubMed]
• Willemsen A. M., Jansen G. A., Komen J. C., van Hooff S., Waterham H. R., Brites P. M. T., Wanders R. J. A., van Kampen A. H. C. Organization and integration of biomedical knowledge with concept maps for key peroxisomal pathways Bioinformatics (Oxford, England) 2008;24 (16):i21-i27 [PubMed]
• Buimer M., Keijser R., Jebbink J. M., Wehkamp D., van Kampen A. H. C., Boer K., van der Post J. A. M., Ris-Stalpers C. Seven placental transcripts characterize HELLP-syndrome Placenta 2008;29 (5):444-453 [PubMed]
• Inda Marcia A., van Batenburg Marinus F., Roos Marco, Belloum Adam Sz, Vasunin Dmitry, Wibisono Adianto, van Kampen Antoine H. C., Breit Timo M. SigWin-detector: a Grid-enabled workflow for discovering enriched windows of genomic features related to DNA sequences BMC research notes 2008;1 (1):63 [PubMed]
• Schaaf Gerben J., van Ruissen Fred, van Kampen Antoine, Kool Marcel, Ruijter Jan M. Statistical comparison of two or more SAGE libraries: one tag at a time Methods in molecular biology (Clifton, N.J.) 2008;387:151-168 [PubMed]
• Sokolović Milka, Sokolović Aleksandar, Wehkamp Diederik, Ver Loren van Themaat Emiel, de Waart Dirk R., Gilhuijs-Pederson Lisa A., Nikolsky Yuri, van Kampen Antoine H. C., Hakvoort Theodorus B. M., Lamers Wouter H. The transcriptomic signature of fasting murine liver BMC genomics 2008;9 (1):528 [PubMed]

2007

• Sokolović Milka, Wehkamp Diederik, Sokolović Aleksandar, Vermeulen Jacqueline, Gilhuijs-Pederson Lisa A., van Haaften Rachel I. M., Nikolsky Yuri, Evelo Chris T. A., van Kampen Antoine H. C., Hakvoort Theodorus B. M., Lamers Wouter H. Fasting induces a biphasic adaptive metabolic response in murine small intestine BMC genomics 2007;8 (1):361 [PubMed]
• Nyangoma Stephen O., van Kampen Antoine A. H. C., Reijmers Theo H., Govorukhina Natalia I., van der Zee Ate G. J., Billingham Lucinda J., Bischoff Rainer, Jansen Ritsert C. Multiple testing issues in discriminating compound-related peaks and chromatograms from high frequency noise, spikes and solvent-based noise in LC-MS data sets Statistical applications in genetics and molecular biology 2007;6:23
• Schaaf Gerben J., van Ruissen Fred, van Kampen Antoine, Kool Marcel, Ruijter Jan M. Statistical Comparison of Two or More SAGE Libraries: One Tag at the Time Methods in molecular biology (Clifton, N.J.) 2007;397:151-168

2006

• Vos Joost B., Datson Nicole A., van Kampen Antoine H., Luyf Angela C., Verhoosel Renate M., Zeeuwen Patrick L., Olthuis Diana, Rabe Klaus F., Schalkwijk Joost, Hiemstra Pieter S. A molecular signature of epithelial host defense: comparative gene expression analysis of cultured bronchial epithelial cells and keratinocytes BMC genomics 2006;7:9 [PubMed]
• van Passel Mark W. J., Bart Aldert, Luyf Angela C. M., van Kampen Antoine H. C., van der Ende Arie Compositional discordance between prokaryotic plasmids and host chromosomes BMC genomics 2006;7:26 [PubMed]
• van Passel Mark W. J., Bart Aldert, Luyf Angela C. M., van Kampen Antoine H. C., van der Ende Arie Identification of acquired DNA in Neisseria lactamica FEMS microbiology letters 2006;262 (1):77-84 [PubMed]
• Zelinkova Zuzana, Derijks Luc J. J., Stokkers Pieter C. F., Vogels Esther W. M., van Kampen Antoine H. C., Curvers Wouter L., Cohn Danny, van Deventer Sander J. H., Hommes Daniël W. Inosine triphosphate pyrophosphatase and thiopurine s-methyltransferase genotypes relationship to azathioprine-induced myelosuppression Clinical gastroenterology and hepatology 2006;4 (1):44-49 [PubMed]

2005

• van Passel M. W. J., Bart A., Thygesen H. H., Luyf A. C. M., van Kampen A. H. C., van der Ende A. An acquisition account of genomic islands based on genome signature comparisons BMC genomics 2005;6:163 [PubMed]
• Braat Henri, Stokkers Pieter, Hommes Tijmen, Cohn Danny, Vogels Esther, Pronk Inge, Spek Arnold, van Kampen Antoine, van Deventer Sander, Peppelenbosch Maikel, Hommes Daan Consequence of functional Nod2 and Tlr4 mutations on gene transcription in Crohn's disease patients Journal of molecular medicine (Berlin, Germany) 2005;83 (8):601-609 [PubMed]
• van Passel M. W. J., Luyf A. C. M., van Kampen A. H. C., Bart A., van der Ende A. Deltarho-web, an online tool to assess composition similarity of individual nucleic acid sequences Bioinformatics (Oxford, England) 2005;21 (13):3053-3055 [PubMed]
• Schaaf Gerben J., Ruijter Jan M., van Ruissen Fred, Zwijnenburg Danny A., Waaijer Raymond, Valentijn Linda J., Benit-Deekman Jennifer, van Kampen Antoine H. C., Baas Frank, Kool Marcel Full transcriptome analysis of rhabdomyosarcoma, normal, and fetal skeletal muscle: statistical comparison of multiple SAGE libraries FASEB journal 2005;19 (3):404-406 [PubMed]
• van Kampen A. H. C., Horrevoets A. J. G. The role of bioinformatics in genomic medicinein: G. Pasterkamp, D. P. V. de Kleijn, editors. Cardiovascular research. New technologies, methods, and applications. Newe York: Springer Science+Business Media Inc; 2005. p. 103-121, ISBN 9789780387235

2004

• van Passel M. W. J., Bart A., Waaijer R. J. A., Luyf A. C. M., van Kampen A. H. C., van der Ende A. An in vitro strategy for the selective isolation of anomalous DNA from prokaryotic genomes Nucleic acids research 2004;32 (14):e114 [PubMed]

2003

• van Kampen A. H. C., Ruijter J. M., van Schaik B. D. C., Caron H. N., Versteeg R. Gene expression informatics and analysisin: M. R. Barnes, I. C. Gray, editors. Bioinformatics for geneticists. Chichester: John Wiley & Sons; 2003. p. 319-344, ISBN 9780470843932
• Versteeg Rogier, van Schaik Barbera D. C., van Batenburg Marinus F., Roos Marco, Monajemi Ramin, Caron Huib, Bussemaker Harmen J., van Kampen Antoine H. C. The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes Genome research 2003;13 (9):1998-2004 [PubMed]
• de Jonge Rosalein R., Vreijling Jeroen P., Meintjes Asker, Kwa Marcel S. G., van Kampen A. H. C., van Schaik Ivo N., Baas Frank Transcriptional profile of the human peripheral nervous system by serial analysis of gene expression Genomics 2003;82 (2):97-108 [PubMed]

2002

• Ruijter Jan M., van Kampen Antoine H. C., Baas Frank Statistical evaluation of SAGE libraries: consequences for experimental design Physiological genomics 2002;11 (2):37-44 [PubMed]
• Luyf A. C. M., de Gast J., van Kampen A. H. C. Visualizing metabolic activity on a genome-wide scale Bioinformatics (Oxford, England) 2002;18 (6):813-818 [PubMed]

2001

• Moreno J. C., Pauws E., van Kampen A. H., Jedlicková M., de Vijlder J. J., Ris-Stalpers C. Cloning of tissue-specific genes using serial analysis of gene expression and a novel computational substraction approach Genomics 2001;75 (1-3):70-76 [PubMed]
• Pauws E., van Kampen A. H., van de Graaf S. A., de Vijlder J. J., Ris-Stalpers C. Heterogeneity in polyadenylation cleavage sites in mammalian mRNA sequences: implications for SAGE analysis Nucleic acids research 2001;29 (8):1690-1694 [PubMed]
• Caron H., van Schaik B., van der Mee M., Baas F., Riggins G., van Sluis P., Hermus M. C., van Asperen R., Boon K., Voûte P. A., Heisterkamp S., van Kampen Antoine, Versteeg R. The human transcriptome map: clustering of highly expressed genes in chromosomal domains Science 2001;291 (5507):1289-1292 [PubMed]
• Spieker N., van Sluis P., Beitsma M., Boon K., van Schaik B. D., van Kampen A. H., Caron H., Versteeg R. The MEIS1 oncogene is highly expressed in neuroblastoma and amplified in cell line IMR32 Genomics 2001;71 (2):214-221 [PubMed]

2000

• van Kampen A. H., van Schaik B. D., Pauws E., Michiels E. M., Ruijter J. M., Caron H. N., Versteeg R., Heisterkamp S. H., Leunissen J. A., Baas F., van der Mee M. USAGE: a web-based approach towards the analysis of SAGE data. Serial Analysis of Gene Expression Bioinformatics (Oxford, England) 2000;16 (10):899-905 [PubMed]

1997

• van Kampen A. H. C., Beckers M. L. M., Buydens L. M. C. A comparative study of the DG-OMEGA (DG Omega), DGII, and GAT method for the structure elucidation of a methylene-acetal linked thymine dinucleotide Computers & chemistry 1997;21 (5):281-297
• van Kampen A. H. C., Ramadan Z., Mulholland M., Hibbert D. B., Buydens L. M. C. Learning Classification Rules from an Ion Chromatography Database Using a Genetic Algorithm Based Classifier System Analytica chimica acta 1997;344:1-15
• van Kampen A. H., Buydens L. M. Reinvestigation of a genetic-based classifier system: the effectiveness of recombination Computers & chemistry 1997;21 (3):153-160 [PubMed]
• van Kampen A. H. C., Buydens L. M. C. The Ineffectiveness of Recombination in a Genetic Algorithm for the Structure Elucidation of a Heptapeptide in Torsion Angle Space. A Comparison to Simulated Annealing CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS 1997;36:141-152

1996

• van Kampen A. H. C., Strom C. S., Buydens L. M. C. Lethalization, Penalty and Repair Functions for Constraint Handling in the Genetic Algorithm Methodology CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS 1996;34 (1):55-68
• van Kampen A. H., Buydens L. M., Lucasius C. B., Blommers M. J. Optimisation of metric matrix embedding by genetic algorithms Journal of biomolecular NMR 1996;7 (3):214-224 [PubMed]
• van Kampen A. H. C., Buydens L. M. C. The Effectiveness of Recombination in the Genetic Algorithm Methodology. A Comparison to Simulated Annealingin: Jarmo T. Alander, editors. Proceedings of the Second Nordic Workshop on Genetic Algorithms and Their Applications (2NWGA). Finland: University of Vaasa; 1996. p. 115-130

1994

• van Kampen A. H. C. Genetic Algorithms and Structure Analysis of Biomolecules by Nmr in Chemometricsin: L. M. C. Buydens, W. J. M. Melssen, editors. Exploring and Exploiting Chemical Information : Libris Amicorum on the occasion of the retirement of Gerrit Kateman as professor of analytical chemistry at the Catholic University of Nijmegen. Nijmegen: Katholieke Universiteit Nijmegen; 1994. p. 145-157, ISBN 9789037302288