D.J. Faber MEng PhD publications

foto

Publications MEng PhD D.J. Faber

Position
Assistant Professor
Main activities
Education, Research
Specialisation
Light-Tissue Interaction; Optical Coherence Tomography; Spectroscopy
Focus of research

When patients are suspected to have cancer or have follow-up examinations after treatment, their experiences will widely differ depending on the location of the suspected lesion. Some procedures will be minimally invase and highly targeted, for example at the skin where the lesion is in plain sight. Others can be much more invasive because the lesion is hidden inside otherwise normal organ tissue such as the prostate or esophagus.

Dispite these differences, the diagnosis of these lesions has one thing in common: patients have to undergo biopsy where tissue is been taken out to be evaluated under a microscope by a pathologist. Taking biopsies is evidently a burden to the patient, it is both difficult and expensive, and it gives the doctor an incomplete picture because there is no information on the tissue surrounding the biopsy. This motivates me to investigate the potential of optical techniques - such as Optical Coherence Tomography and Single Fiber Reflectance spectroscopy - for cancer detection and diagnostics. 

Functional Optical Biopsy combines optical techniques to get information on tissue anatomy, structure and physiological function at resolutions approaching the cellular level. At the heart of our methods is Optical Coherence Tomography (OCT), an imaging technique that provides micrometer scale 3D images of tissue volumes. Using OCT and Spectroscopic OCT, physiological endpoints as flow, perfusion, oxygenation and biochemical composition can be measured in and around the suspected lesion. Cancer progression leads to changing scattering properties of affected tissues. Single Fiber Reflectance (SFR) spectroscopy detects these changes at small spatial scales, making it a promising tool for early in situ detection especially at locations that cannot be reached with conventional radiological imaging techniques or with OCT. Combined with e.g. (darkfield) reflection spectroscopy and multi-photon fluorescence imaging, even better characterization of suspected lesions will be possible. The doctors can use this information improve the selection of biopsy sites from information from the lesion and improve treatment planning from the information from the lesions surroundings.

The scope my research interests can broadly be summarized in 3 topics:

  • Physical understanding of the optical signals. Absorption and fluorescence spectra reflect the biochemical composition of the tissue. Quantification of these spectra is challenging, especially when measured in patients. Next to these, the measured signals are determined by light scattering, which reflects the nano-scale organization of the tissue. The relation between morphological changes in or between cells and light scattering is not yet completely understood. We address this problem with out-of-the-box modelling of our signals, for example by connecting measured signal statistics (mean, variance, correlation scales) to a statistical descriptions of the sample organization.
  • Novel instrumentation. We aim to evaluate and validate our technology in the only setting that matters: in the clinic, with patients. Instrumentation that is compatible with existing procedures and protocols is thus paramount. In collaboration with our clinical collaborators and partners from industry, we have several exciting projects underway.
  • Clinical application is assured via a close collaboration with several departments within our hospital. OCT debuted in ophthalmology; today we collaborate with the urology department (applications in bladder, kidney, urether, prostate), the department of cardiology and the department of reconstructive surgery, as well as with the gyneacology department of the Dutch Cancer Institute.

[last edited 21/02/2020]

Amsterdam UMC Research Institutes
AMC departments
All publications

2021

  • Fiske Lionel D., Aalders Maurice C. G., Almasian Mitra, van Leeuwen Ton G., Katsaggelos Aggelos K., Cossairt Oliver, Faber Dirk J. Bayesian analysis of depth resolved OCT attenuation coefficients Scientific reports 2021;11 (1) [PubMed]
  • Post Anouk L., de Groof Albert J., Zhang Xu U., Swager Anne-Fré, Fockens Kiki N., Pouw Roos E., Weusten Bas L. A. M., Faber Dirk J., de Bruin Daniel M., Bergman Jacques J. G. H. M., van Leeuwen Ton G., Sterenborg Henricus J. C. M., Curvers Wouter L. Toward improved endoscopic surveillance with multidiameter single fiber reflectance spectroscopy in patients with Barrett's esophagus Journal of biophotonics 2021 [PubMed]

2020

  • Post Anouk L., Cernohorsky Paul, Pedrigi Ryan M., Streekstra Geert J., d'Hooghe Julia N. S., Annema Jouke T., Strackee Simon D., Krams Rob, van Leeuwen Ton G. J. M., de Bruin Daniel M., Faber Dirk J. 3D co-registration algorithm for catheter-based optical coherence tomography OSA Continuum 2020;3 (10):2707-2721
  • Faber Dirk J., Post Anouk L., Sterenborg Henricus J. C. M., van Leeuwen Ton G. Analytical model for diffuse reflectance in single fiber reflectance spectroscopy Optics letters 2020;45 (7):2078-2081 [PubMed]
  • Zhang Xu U., Faber Dirk J., van Leeuwen Ton G., Sterenborg Henricus J. C. M. Effect of probe pressure on skin tissue optical properties measurement using multi-diameter single fiber reflectance spectroscopy JPhys Photonics 2020;2 (3)
  • Swaan Abel, Muller Berrend G., Wilk Leah S., Almasian Mitra, Zwartkruis Evita C. H., Rozendaal L. Rence, de Bruin Daniel M., Faber Dirk J., van Leeuwen Ton G., van Herk Marcel B. En-face optical coherence tomography for the detection of cancer in prostatectomy specimens: Quantitative analysis in 20 patients Journal of biophotonics 2020;13 (6) [PubMed]
  • Uribe-Patarroyo Néstor, Post Anouk L., Ruiz-Lopera Sebastián, Faber Dirk J., Bouma Brett E. Noise and bias in optical coherence tomography intensity signal decorrelation OSA Continuum 2020;3 (4):709-741
  • Gong Peijun, Almasian Mitra, van Soest Gijs, de Bruin Daniel, van Leeuwen Ton, Sampson David, Faber Dirk Parametric imaging of attenuation by optical coherence tomography: review of models, methods, and clinical translation Journal of biomedical optics 2020;25 (4):1-34 [PubMed]
  • Zhang Xu Probe pressure effects on Multi-Diameter Single Fiber Reflectance spectroscopy measurements 2020. 144p. [UvA Dissertations Online] University of Amsterdam. (Supervisors: van Leeuwen A. G. J. M., Sterenborg Dick J. C. M.; Co-supervisor: Faber Dirk J.)
  • Post Anouk L. Quantifying tissue optical properties with Single Fiber Reflectance spectroscopy: Modeling the short journey of photons 2020. 141p. [UvA Dissertations Online] University of Amsterdam. (Supervisors: van Leeuwen A. G. J. M., Sterenborg Dick J. C. M.; Co-supervisor: Faber Dirk J.)
  • Post Anouk L., Faber Dirk J., Sterenborg Henricus J. C. M., van Leeuwen Ton G. Subdiffuse scattering and absorption model for single fiber reflectance spectroscopy Biomedical optics express 2020;11 (11):6620-6633 [PubMed]
  • Post Anouk L., Sterenborg Henricus J. C. M., Woltjer Fransien G., van Leeuwen Ton G., Faber Dirk J. Subdiffuse scattering model for single fiber reflectance spectroscopy Journal of biomedical optics 2020;25 (1):1-11 [PubMed]
  • Swaan Abel The analysis of prostate tissue by optical coherence tomography 2020. 185p. ISBN 9789464023114. [UvA Dissertations Online] University of Amsterdam. (Supervisors: van Leeuwen Ton G. J. M., van Herk Marcellinus B.; Co-supervisors: Faber Dirk J., de Bruin Daniel M.)

2019

  • Ruis Roosje M., Leinse Arne, Dekker Ronald, Heideman Rene G., van Leeuwen Ton G., Faber Dirk J. Decreasing the Size of a Spectral Domain Optical Coherence Tomography System with Cascaded Arrayed Waveguide Gratings in a Photonic Integrated Circuit IEEE JOURNAL OF SELECTED TOPICS IN QUANTUM ELECTRONICS 2019;25 (1)
  • Post Anouk L., Jacques Steven L., Sterenborg Henricus J. C. M., Faber Dirk J., van Leeuwen Ton G. Erratum: Modeling subdiffusive light scattering by incorporating the tissue phase function and detector numerical aperture (Journal of Biomedical Optics (2017) 22:5 (050501) DOI: 10.1117/1.JBO.22.5.050501) Journal of biomedical optics 2019;24 (6):1-2 [PubMed]
  • Freund Jan Erik, Faber Dirk J., Bus Mieke T., van Leeuwen Ton G., de Bruin Daniel M. Grading upper tract urothelial carcinoma with the attenuation coefficient of in-vivo optical coherence tomography Lasers in surgery and medicine 2019;51 (5):399-406 [PubMed]
  • Zhang Xu U., van der Zee Piet, Atzeni Isabella, Faber Dirk J., van Leeuwen Ton G., Sterenborg Henricus J. C. M. Multidiameter single-fiber reflectance spectroscopy of heavily pigmented skin: modeling the inhomogeneous distribution of melanin Journal of biomedical optics 2019;24 (12):1-11 [PubMed]
  • Swaan Abel, Muller Berrend G, Wilk Leah S, Almasian Mitra, van Kollenburg Rob A A, Zwartkruis Evita, Rozendaal L Rence, de Bruin Daniel M, Faber Dirk J, van Leeuwen Ton G, van Herk Marcel B One-to-one registration of en-face optical coherence tomography attenuation coefficients with histology of a prostatectomy specimen Journal of biophotonics 2019;12 (4):e201800274 [PubMed]
  • Faber Dirk J., Post Anouk L., van Leeuwen Ton G. Pathlength distribution of (sub)diffusively reflected lightin: Hamid Dehghani, Heidrun Wabnitz, editors. Diffuse Optical Spectroscopy and Imaging VII. SPIE; 2019.
  • Muller Berrend G. Prerequisites for patient-tailored treatment in localized prostate cancer 2019. 269p. ISBN 9789463613545. [UvA Dissertations Online] University of Amsterdam. (Supervisors: van Leeuwen A. G. J. M. , de Reijke T. M.; Co-supervisors: de Bruin D. M. , Faber D. J.)
  • Zhang Xu U., Faber Dirk J., Post Anouk L., van Leeuwen Ton G., Sterenborg Henricus J. C. M. Refractive index measurement using single fiber reflectance spectroscopy Journal of biophotonics 2019:e201900019 [PubMed]
  • Attendu Xavier, Ruis Roosje M., Boudoux Caroline, van Leeuwen Ton G., Faber Dirk J. Simple and robust calibration procedure for k-linearization and dispersion compensation in optical coherence tomography Journal of biomedical optics 2019;24 (5):1-11 [PubMed]

2018

  • Bus Mieke T. J., Cernohorsky Paul, de Bruin Daniel M., Meijer Sybren L., Streekstra Geert J., Faber Dirk J., Kamphuis Guido M., Zondervan Patricia J., van Herk Marcel, Laguna Pes Maria P., Grundeken Maik J., Brandt Martin J., de Reijke Theo M., de La Rosette Jean J. M. C. H., van Leeuwen Ton G. Ex-vivo study in nephroureterectomy specimens defining the role of 3-D upper urinary tract visualization using optical coherence tomography and endoluminal ultrasound Journal of medical imaging (Bellingham, Wash.) 2018;5 (1):017001 [PubMed]
  • Almasian Mitra From sample structure to optical properties and back: A theoretical framework for quantitative OCT and its clinical application 2018. 189p. ISBN 9789463611930. [UvA Dissertations Online] University of Amsterdam. (Supervisors: van Leeuwen A. G. J. M., Aalders M. C. G., Faber D. J.)
  • Muller Berrend G., van Kollenburg Rob A. A., Swaan Abel, Zwartkruis Evita C. H., Brandt Martin J., Wilk Leah S., Almasian Mitra, Schreurs A. Wim, Faber Dirk J., Rozendaal L. Rence, Vis Andre N., Nieuwenhuijzen Jakko A., van Moorselaar Jeroen R. J. A., de la Rosette Jean J. M. C. H., de Bruin Daniel Martijn, van Leeuwen Ton G. Needle-based optical coherence tomography for the detection of prostate cancer: A visual and quantitative analysis in 20 patients Journal of biomedical optics 2018;23 (8) [PubMed]

2017

  • Guerci Philippe, Ince Yasin, Heeman Paul, Faber Dirk J., Ergin Bulent, Ince Can A LED-based phosphorimeter for measurement of microcirculatory oxygen pressure Journal of applied physiology (Bethesda, Md. 2017;122 (2):307-316 [PubMed]
  • Jansen Sanne M., de Bruin Daniel M., Faber Dirk J., Dobbe Iwan J. G. G., Heeg Erik, Milstein Dan M. J., Strackee Simon D., van Leeuwen Ton G. Applicability of quantitative optical imaging techniques for intraoperative perfusion diagnostics: a comparison of laser speckle contrast imaging, sidestream dark-field microscopy, and optical coherence tomography Journal of biomedical optics 2017;22 (8):086004-9 [PubMed]
  • Muller B. G., Swaan A., de Bruin D. M., van den Bos W., Schreurs A. W., Faber D. J., Zwartkruis E. C. H., Rozendaal L., Vis A. N., Nieuwenhuijzen J. A., van Moorselaar R. J. A., van Leeuwen T. G., de la Rosette J. J. M. C. H. Customized Tool for the Validation of Optical Coherence Tomography in Differentiation of Prostate Cancer Technology in cancer research & treatment 2017;16 (1):57-65 [PubMed]
  • Post Anouk L., Jacques Steven L., Sterenborg Henricus J. C. M., Faber Dirk J., van Leeuwen Ton G. Modeling subdiffusive light scattering by incorporating the tissue phase function and detector numerical aperture Journal of biomedical optics 2017;22 (5) [PubMed]
  • Schreurs Tom J. L., van Gorkum Robbert, Zhang Xu U., Faber Dirk J., van Leeuwen Ton G., Nicolay Klaas, Strijkers Gustav J. Noninvasive fluence rate mapping in living tissues using magnetic resonance thermometry Journal of biomedical optics 2017;22 (3) [PubMed]
  • Almasian Mitra, van Leeuwen Ton G., Faber Dirk J. OCT Amplitude and Speckle Statistics of Discrete Random Media Scientific reports 2017;7 (1) [PubMed]
  • Swager Anne-Fre, Faber Dirk J., de Bruin Daniel M., Weusten Bas L., Meijer Sybren L., Bergman Jacques J., Curvers Wouter L., van Leeuwen Ton G. Quantitative attenuation analysis for identification of early Barrett's neoplasia in volumetric laser endomicroscopy Journal of biomedical optics 2017;22 (8):086001 [PubMed]
  • Zhang Xu U., Post Anouk L., Faber Dirk J., van Leeuwen Ton G., Sterenborg Henricus J. C. M. Single fiber reflectance spectroscopy calibration Journal of biomedical optics 2017;22 (10):100502-4 [PubMed]
  • Jelvehgaran Pouya, Alderliesten Tanja, Weda Jelmer J. A., de Bruin Martijn, Faber Dirk J., Hulshof Maarten C. C. M., van Leeuwen Ton G., van Herk Marcel, de Boer Johannes F. Visibility of fiducial markers used for image-guided radiation therapy on optical coherence tomography for registration with CT: An esophageal phantom study Medical physics 2017;44 (12):6570-6582 [PubMed]

2016

  • de Bruin Daniel M., Broekgaarden Mans, van Gemert Martin J. C., Heger Michal, de la Rosette Jean J., van Leeuwen Ton G., Faber Dirk J. Assesment of apoptosis induced changes in scattering using optical coherence tomography Journal of biophotonics 2016;9 (9):913-923 [PubMed]
  • Swager Anne-Fré, Boerwinkel David F., de Bruin Daniel M., Faber Dirk J., van Leeuwen Ton G., Weusten Bas L., Meijer Sybren L., Bergman Jacques J., Curvers Wouter L. Detection of buried Barrett's glands after radiofrequency ablation with volumetric laser endomicroscopy Gastrointestinal endoscopy 2016;83 (1):80-88 [PubMed]
  • Verstraete Hans R.G.W., Almasian Mitra, Pozzi Paolo, Bilderbeek Rolf, Kalkman Jeroen, Faber Dirk J., Verhaegen Michel Feedforward operation of a lens setup for large defocus and astigmatism correctionin: Frederic Truchetet, Peter Schelkens, Touradj Ebrahimi, Gabriel Cristobal, Pasi Saarikko, editors. Optics, Photonics and Digital Technologies for Imaging Applications IV. SPIE; 2016.
  • Bus M. T. J., de Bruin D. M., Faber D. J., Kamphuis G. M., Zondervan P. J., Laguna-Pes M. P., van Leeuwen T. G., de Reijke Th M., de la Rosette J. J. M. C. H. Optical Coherence Tomography as a Tool for In Vivo Staging and Grading of Upper Urinary Tract Urothelial Carcinoma: A Study of Diagnostic Accuracy Journal of urology 2016;196 (6):1749-1755 [PubMed]
  • Wagstaff Peter G. K., Ingels Alexandre, de Bruin Daniel M., Buijs Mara, Zondervan Patricia J., Savci Heijink C. Dilara, van Delden Otto M., Faber Dirk J., van Leeuwen Ton G., van Moorselaar R. Jeroen A., de La Rosette Jean J. M. C. H., Laguna Pes M. Pilar Percutaneous Needle Based Optical Coherence Tomography for the Differentiation of Renal Masses: a Pilot Cohort Journal of urology 2016;195 (5):1578-1585 [PubMed]
  • Muller Berrend G., de Bruin Daniel M., Brandt Martin J., van den Bos Willemien, van Huystee Suzanne, Faber D. J., Savci Dilaria, Zondervan Patricia J., de Reijke Theo M., Laguna-Pes M. Pilar, van Leeuwen Ton G., de La Rosette Jean J. M. C. H. Prostate cancer diagnosis by optical coherence tomography: First results from a needle based optical platform for tissue sampling Journal of biophotonics 2016;9 (5):490-498 [PubMed]
  • Cernohorsky Paul, Jansen Sanne M., de Bruin Daniël M., van der Pol Edwin, Savci-Heijink Cemile D., Strackee Simon D., Faber Dirk J., van Leeuwen Ton G. Quantitative assessment of optical properties in healthy cartilage and repair tissue by optical coherence tomography and histology. IEEE JOURNAL OF SELECTED TOPICS IN QUANTUM ELECTRONICS 2016;22 (3):6801407
  • Nadort Annemarie, Kalkman Koen, van Leeuwen Ton G., Faber Dirk J. Quantitative blood flow velocity imaging using laser speckle flowmetry Scientific reports 2016;6:25258 [PubMed]
  • Swager A., Boerwinkel D. F., de Bruin D. M., Weusten B. L., Faber D. J., Meijer S. L., van Leeuwen T. G., Curvers W. L., Bergman J. J. Volumetric laser endomicroscopy in Barrett's esophagus: a feasibility study on histological correlation Diseases of the esophagus 2016;29 (6):505-512 [PubMed]

2015

  • Wessels Ronni Clinical experiences with optical coherence tomography in epithelial (pre)malignanciesEnschede: Ipskamp Drukkers, Enschede; 2015. 141p. ISBN 9789462596818. [UvA Dissertations Online] Universiteit Twente: TNW. (Supervisors: Ruers T. J. M., van Leeuwen A. G. J. M.; Co-supervisors: Faber D. J., van Beurden M.)
  • Cernohorsky Paul, Kok Aimee C., Bruin Daniel Martijn de, Brandt Martin J., Faber Dirk J., Tuijthof Gabrielle J., Kerkhoffs Gino M., Strackee Simon D., van Leeuwen Ton G., de Bruin Daniël M. Comparison of optical coherence tomography and histopathology in quantitative assessment of goat talus articular cartilage Acta orthopaedica 2015;86 (2):257-263 [PubMed]
  • Wessels R., de Bruin D. M., Relyveld G. N., Faber D. J., Vincent A. D., Sanders J., van Leeuwen T. G., Ruers T. J. M. Functional optical coherence tomography of pigmented lesions Journal of the European Academy of Dermatology and Venereology 2015;29 (4):738-744 [PubMed]
  • Nadort Annemarie Glow with the flow: Quantifying blood flow and photoluminescence signal in biological tissue 2015. 209p. ISBN 9789461825469. [UvA Dissertations Online] University of Amsterdam. (Supervisors: van Leeuwen A. G. J. M., Aalders M. C. G.; Co-supervisor: Faber D. J.)
  • Wagstaff Peter G., Swaan Abel, Ingels Alexandre, Zondervan Patricia J., van Delden Otto M., Faber Dirk J., van Leeuwen Ton G., de la Rosette Jean J., de Bruin Daniel M., Laguna Pes M. Pilar In vivo, percutaneous, needle based, optical coherence tomography of renal masses Journal of visualized experiments 2015;2015 (97):e52574 [PubMed]
  • Wessels Ronni, de Bruin Daniel M., Faber Dirk J., Sanders Joyce, Vincent Andrew D., van Beurden Marc, van Leeuwen Ton G., Ruers Theo J. M. Learning curve and interobserver variance in quantification of the optical coherence tomography attenuation coefficient Journal of biomedical optics 2015;20 (12):121313 [PubMed]
  • Wessels Ronni, de Bruin Daniel M., Faber Dirk J., Horenblas Simon, van Rhijn Bas W. G., Vincent Andrew D., van Beurden Marc, van Leeuwen Ton G., Ruers Theo J. M. Optical coherence tomography accurately identifies patients with penile (pre) malignant lesions: A single center prospective study Urology annals 2015;7 (4):459-465 [PubMed]
  • Darma Stanley, Kok Pauline H. B., van den Berg Thomas J. T. P., Abràmoff Michael D., Faber Dirk J., Hulsman Caroline A., Zantvoord Frank, Mourits Maarten P., Schlingemann Reinier O., Verbraak Frank D. Optical density filters modeling media opacities cause decreased SD-OCT retinal layer thickness measurements with inter- and intra-individual variation Acta ophthalmologica 2015;93 (4):355-361 [PubMed]
  • Bus Mieke T. J., de Bruin D. Martijn, Faber Dirk J., Kamphuis Guido M., Zondervan Patricia J., Laguna Pes M. Pilar, de Reijke Theo M., Traxer Olivier, van Leeuwen Ton G., de La Rosette Jean J. M. C. H. Optical diagnostics for upper urinary tract urothelial cancer: technology, thresholds, and clinical applications Journal of endourology / Endourological Society 2015;29 (2):113-123 [PubMed]
  • Muller Berrend G., de Bruin Daniel M., van den Bos Willemien, Brandt Martin J., Velu Juliette F., Bus Mieke T. J., Faber Dirk J., Savci Dilara, Zondervan Patricia J., de Reijke Theo M., Pes Pilar Laguna, de la Rosette Jean, van Leeuwen Ton G. Prostate cancer diagnosis: the feasibility of needle-based optical coherence tomography Journal of medical imaging (Bellingham, Wash.) 2015;2 (3):037501 [PubMed]
  • Bosschaart Nienke, van Leeuwen T. G., Aalders Maurice C., Hermann B., Drexler W., Faber Dirk J. Spectroscopic low coherence interferometryin: W. Drexler, J. G. Fujimoto, editors. Optical Coherence tomography : Technology and Applications, 2nd. edition. Cham: Springer; 2015. p. 1163-1187, ISBN 9783319064208; 9783319064192; 9783319064185
  • Wessels Ronni, van Beurden Marc, de Bruin Daniel M., Faber Dirk J., Vincent Andrew D., Sanders Joyce, van Leeuwen Ton G., Ruers Theo J. M. The value of optical coherence tomography in determining surgical margins in squamous cell carcinoma of the vulva: a single-center prospective study International journal of gynecological cancer 2015;25 (1):112-118 [PubMed]
  • Almasian Mitra, Bosschaart Nienke, van Leeuwen Ton G., Faber Dirk J. Validation of quantitative attenuation and backscattering coefficient measurements by optical coherence tomography in the concentration-dependent and multiple scattering regime Journal of biomedical optics 2015;20 (12):121314 [PubMed]

2014

  • Bosschaart Nienke, Edelman Gerda J., Aalders Maurice C. G., van Leeuwen Ton G., Faber Dirk J. A literature review and novel theoretical approach on the optical properties of whole blood Lasers in medical science 2014;29 (2):453-479 [PubMed]
  • de Bruin Daniel Martijn Clinical applications of functional optical coherence tomography 2014. 201p. ISBN 9789462035485. [UvA Dissertations Online] University of Amsterdam. (Supervisors: van Leeuwen A. G. J. M., Mourits M. P.; Co-supervisors: Faber D. J., Verbraak F. D.)
  • Wessels R., de Bruin D. M., Faber D. J., van Leeuwen T. G., van Beurden M., Ruers T. J. M. Optical biopsy of epithelial cancers by optical coherence tomography (OCT) Lasers in medical science 2014;29 (3):1297-1305 [PubMed]
  • Bosschaart Nienke, van Leeuwen Ton G., Aalders Maurice C. G., Faber Dirk J. Quantitative comparison of analysis methods for spectroscopic optical coherence tomography: reply to comment Biomedical optics express 2014;5 (9):3034-3035 [PubMed]

2013

  • de Kinkelder Roy, de Bruin Daniel M., Verbraak Frank D., van Leeuwen Ton G., Faber Dirk J. Comparison of retinal nerve fiber layer thickness measurements by spectral-domain optical coherence tomography systems using a phantom eye model Journal of biophotonics 2013;6 (4):314-320 [PubMed]
  • Nguyen V. Duc, Faber D. J., van der Pol E., van Leeuwen T. G., Kalkman J. Dependent and multiple scattering in transmission and backscattering optical coherence tomography Optics express 2013;21 (24):29145-29156 [PubMed]
  • Bremmer Rolf H., van Gemert Martin J. C., Faber Dirk J., van Leeuwen Ton G., Aalders Maurice C. G. Diffuse reflectance relations based on diffusion dipole theory for large absorption and reduced scattering Journal of biomedical optics 2013;18 (8) [PubMed]
  • Nguyen V. Duc, Faber D. J., van der Poll E., van Leeuwen T. G., Kalkman J. Modeling light propagation in transmission and backscattering optical coherence tomographyin: Computational Optical Sensing and Imaging, COSI 2013. Optical Society of America (OSA); 2013., ISBN 9781557529756
  • Nguyen V. Duc, Faber D. J., Poll E. van der, Leeuwen T. G.van, Kalkman J. Modeling light propagation in transmission and backscattering optical coherence tomographyin: Imaging Systems and Applications, ISA 2013. Optical Society of America (OSA); 2013., ISBN 9781557529756
  • Bosschaart Nienke, van Leeuwen Ton G., Aalders Maurice C. G., Faber Dirk J. Quantitative comparison of analysis methods for spectroscopic optical coherence tomography Biomedical optics express 2013;4 (11):2570-2584 [PubMed]
  • Nadort Annemarie, Woolthuis Rutger G., van Leeuwen Ton G., Faber Dirk J. Quantitative laser speckle flowmetry of the in vivo microcirculation using sidestream dark field microscopy Biomedical optics express 2013;4 (11):2347-2361 [PubMed]
  • Bus Mieke T. J., Muller Berrend G., de Bruin Daniel M., Faber Dirk J., Kamphuis Guido M., van Leeuwen Ton G., de Reijke Theo M., de La Rosette Jean J. M. C. H. Volumetric in vivo visualization of upper urinary tract tumors using optical coherence tomography: a pilot study Journal of urology 2013;190 (6):2236-2242 [PubMed]

2012

  • Kodach Vitali M. Development of functional near-infrared optical coherence tomography 2012. 114p. ISBN 9789461820815. [UvA Dissertations Online] University of Amsterdam. (Supervisor: van Leeuwen A. G. J. M.; Co-supervisors: Kalkman J., Faber D. J.)
  • Barwari Kurdo, de Bruin Daniel M., Faber Dirk J., van Leeuwen Ton G., de la Rosette Jean J., Laguna M. Pilar Differentiation between normal renal tissue and renal tumours using functional optical coherence tomography: a phase I in vivo human study BJU international 2012;110 (8B):E415-E420 [PubMed]
  • Faber Dirk J., De Bruin D. Martijn, Wessels Ronni, Van Leeuwen Ton G. Functional Optical Biopsy of epithelial tumorsin: 2012 IEEE Photonics Conference, IPC 2012. 2012. p. 74-75, ISBN 9781457707315
  • Cernohorsky Paul, de Bruin Daniel M., van Herk Marcel, Bras Johannes, Faber Dirk J., Strackee Simon D., van Leeuwen Ton G. In-situ imaging of articular cartilage of the first carpometacarpal joint using co-registered optical coherence tomography and computed tomography Journal of biomedical optics 2012;17 (6):060501 [PubMed]
  • Wessels Ronni, de Bruin Daniel M., Faber Dirk J., van Boven Hester H., Vincent Andrew D., van Leeuwen Ton G., van Beurden Marc, Ruers Theo J. M. Optical coherence tomography in vulvar intraepithelial neoplasia Journal of biomedical optics 2012;17 (11):116022 [PubMed]
  • de Kinkelder Roy Optical diagnostic techniques in ophthalmology 2012. 127p. ISBN 9789462031692. [UvA Dissertations Online] University of Amsterdam. (Supervisor: van Leeuwen A. G. J. M.; Co-supervisors: Verbraak F. D., Faber D. J.)
  • Bosschaart Nienke, Aalders Maurice C. G., van Leeuwen Ton G., Faber Dirk J. Spectral domain detection in low-coherence spectroscopy Biomedical optics express 2012;3 (9):2263-2272 [PubMed]

2011

  • Barwari Kurdo, de Bruin Daniel M., Cauberg Evelyne C. C., Faber Dirk J., van Leeuwen Ton G., Wijkstra Hessel, de la Rosette Jean, Laguna M. Pilar Advanced diagnostics in renal mass using optical coherence tomography: a preliminary report Journal of endourology / Endourological Society 2011;25 (2):311-315 [PubMed]
  • Kodach V. M., Faber D. J., van Marle J., van Leeuwen T. G., Kalkman J. Determination of the scattering anisotropy with optical coherence tomography Optics express 2011;19 (7):6131-6140 [PubMed]
  • de Kinkelder Roy, Kalkman Jeroen, Faber Dirk J., Schraa Olaf, Kok Pauline H. B., Verbraak Frank D., van Leeuwen Ton G. Heartbeat-Induced Axial Motion Artifacts in Optical Coherence Tomography Measurements of the Retina Investigative ophthalmology & visual science 2011;52 (6):3908-3913 [PubMed]
  • Patil Chetan A., Kalkman Jeroen, Faber Dirk J., Nyman Jeffry S., van Leeuwen Ton G., Mahadevan-Jansen Anita Integrated system for combined Raman spectroscopy-spectral domain optical coherence tomography Journal of biomedical optics 2011;16 (1):011007 [PubMed]
  • Bosschaart Nienke, Faber Dirk J., van Leeuwen Ton G., Aalders Maurice C. G. In vivo low-coherence spectroscopic measurements of local hemoglobin absorption spectra in human skin Journal of biomedical optics 2011;16 (10):100504 [PubMed]
  • de Kinkelder R., van der Veen R. L. P., Verbaak F. D., Faber D. J., van Leeuwen T. G., Berendschot T. T. J. M. Macular pigment optical density measurements: evaluation of a device using heterochromatic flicker photometry Eye (London, England) 2011;25 (1):105-112 [PubMed]
  • Bosschaart Nienke, Faber Dirk J., Leeuwen Ton G. van, Aalders Maurice C. G. Measurements of wavelength dependent scattering and backscattering coefficients by low-coherence spectroscopy Journal of biomedical optics 2011;16 (3):030503 [PubMed]
  • Barwari K., de Bruin D. M., Faber D. J., van Leeuwen T. G., de la Rosette J. J., Laguna M. P. New optical diagnostic tools in renal cell cancer Minerva urologica e nefrologica = The Italian journal of urology and nephrology 2011;63 (3):213-225 [PubMed]
  • Faber Dirk J., van Leeuwen Ton G. Optical Coherence Tomographyin: Ashley J. Welch, Martin J. C. van Gemert, editors. Optical-Thermal Response of Laser-Irradiated Tissue. London New York: Springer; 2011. p. 713-741, ISBN 9789048188314; 9789048188307

2010

  • van der Meer Freek J., Faber Dirk J., Aalders Maurice C. G., Poot Andre A., Vermes Istvan, van Leeuwen Ton G. Apoptosis- and necrosis-induced changes in light attenuation measured by optical coherence tomography Lasers in medical science 2010;25 (2):259-267 [PubMed]
  • Kodach V., Bosschaart N., Kalkman J., van Leeuwen T., Faber D. Concentration Dependent Scattering Coefficients of Intralipid Measured with OCT Biomedical optics 2010;2010:BSuD11
  • Bezemer Rick, Faber Dirk J., Almac Emre, Kalkman Jeroen, Legrand Matthieu, Heger Michal, Ince Can Evaluation of multi-exponential curve fitting analysis of oxygen-quenched phosphorescence decay traces for recovering microvascular oxygen tension histograms Medical & biological engineering & computing 2010;48 (12):1233-1242 [PubMed]
  • Bosschaart N., Aalders M., Faber D., van Leeuwen T. Measurements of Wavelength Dependent Scattering Coefficients by Low Coherence Spectroscopy Biomedical optics 2010;2010:BTuD30
  • Kalkman J., Bykov A. V., Faber D. J., van Leeuwen T. G. Multiple and dependent scattering effects in Doppler optical coherence tomography Optics express 2010;18 (4):3883-3892 [PubMed]
  • Kalkman J., Bykov A. V., Faber D., van Leeuwen T. Multiple Scattering Effects in Intralipid and Whole Blood Measured with Doppler Optical Coherence Tomography Biomedical optics 2010;2010:BTuD17
  • de Bruin Daniel M., Bremmer Rolf H., Kodach Vitali M., de Kinkelder Roy, van Marle Jan, van Leeuwen Ton G., Faber Dirk J. Optical phantoms of varying geometry based on thin building blocks with controlled optical properties Journal of biomedical optics 2010;15 (2):025001 [PubMed]
  • Kodach V. M., Kalkman J., Faber D. J., van Leeuwen T. G. Quantitative comparison of the OCT imaging depth at 1300 nm and 1600 nm Biomedical optics express 2010;1 (1):176-185 [PubMed]
  • Cauberg Evelyne C. C., de Bruin Daniël M., Faber Dirk J., de Reijke Theo M., Visser Mike, de La Rosette Jean J. M. C. H., van Leeuwen Ton G. Quantitative measurement of attenuation coefficients of bladder biopsies using optical coherence tomography for grading urothelial carcinoma of the bladder Journal of biomedical optics 2010;15 (6):066013-066013-6 [PubMed]
  • Patil Chetan A., Kalkman Jeroen, Faber Dirk, Penn John S., van Leeuwen Ton G., Mahadevan-Jansen Anita Structural and biochemical characterization of the rat retina with combined Raman spectroscopy-spectral domain optical coherence tomography (RS-SDOCT)in: Fabrice Manns, Per G. Söderberg, Arthur Ho, editors. Ophthalmic technologies XX. S.l.: s.n.; 2010. p. 778965, ISBN 9780819479464

2009

  • Cauberg Evelyne C. C., de Bruin Daniël M., Faber Dirk J., van Leeuwen Ton G., de La Rosette Jean J. M. C. H., de Reijke Theo M. A new generation of optical diagnostics for bladder cancer: technology, diagnostic accuracy, and future applications European urology 2009;56 (2):287-296 [PubMed]
  • Faber Dirk J., van Leeuwen Ton G. Are quantitative attenuation measurements of blood by optical coherence tomography feasible? Optics letters 2009;34 (9):1435-1437 [PubMed]
  • Faber Dirk J., van Leeuwen Ton G. Doppler calibration method for Spectral Domain OCT spectrometers Journal of biophotonics 2009;2 (6-7):407-415 [PubMed]
  • Bosschaart Nienke, Aalders Maurice C., Faber Dirk J., Weda Jelmer J., van Gemert Martin J., van Leeuwen Ton G. Quantitative measurements of absorption spectra in scattering media by low-coherence spectroscopy Optics letters 2009;34 (23):3746-3748 [PubMed]

2008

  • Braaf Boy, Nadort Annemarie, Faber Dirk J., ter Wee Rene, van Leeuwen Ton G., Aalders Maurice C. G. Blood oxygen saturation of frozen tissue determined by hyper spectral imagingin: Daniel L. Farkas, Dan V. Nicolau, Robert C. Leif, editors. Imaging Manupulation & Analysis of Biomolecules, cells and tissue VI. S.l.: s.n.; 2008. p. 1-2, ISBN 9780819470348
  • Faber D. J., Aalders M. C. G., Drexler W., van Leeuwen T. G. Using Low Coherent Light for Spectroscopic Information from Tissuein: W. Drexler, J. G. Fujimoto, editors. Optical Coherence Tomography : Technology and Applications. Heidelberg: Springer; 2008., ISBN 9783540775492; 9783540775508
  • Kodach Vitali M., Faber Dirk J., van Leeuwen Ton G. Wavelength swept Ti : sapphire laser OPTICS COMMUNICATIONS 2008;281 (19):4975-4978

2007

  • Beek Johan F., Faber Dirk J. An introduction to tissue optics for OCTin: Evelyn Regar, Ton G. van Leeuwen, Patrick W. Serruys, editors. Optical Coherence Tomography in Cardiovascular Research. London: Informa Healthcare; 2007. p. 3-17, ISBN 9781841846118
  • Van Den Wijngaard Jeroen P.H.M., Westerhof Berend E., Faber Dirk J., Ramsay Margaret M., Westerhof Nico, Van Gemert Martin J.C. Erratum: Abnormal arterial flows by a distributed model of the fetal circulation (American Journal of Physiology-Regulatory Integrative and Comparative Physiology (2006) 291, (R1222-R1233) DOI: 10.1152/ajpregu.00212. 2006) American journal of physiology. Regulatory, integrative and comparative physiology 2007;292 (1):R663
  • Faber Dirk J., de Bruin Martijn, Aalders Maurice C. G., Verbraak Frank D., van Leeuwen Ton G. NAOMI: nanoparticle-assisted optical molecular imagingin: Alexander N. Cartwright, Dan V. Nicolau, editors. Nanoscale Imaging, Spectroscopy, Sensing, and Actuation for Biomedical Applications IV. S.l.: SPIE Conference Proceedings 6647; 2007. p. 1-10
  • van Velthoven Mirjam E. J., Faber Dirk J., Verbraak Frank D., van Leeuwen Ton G., de Smet Marc D. Recent developments in optical coherence tomography for imaging the retina Progress in retinal and eye research 2007;26 (1):57-77 [PubMed]
  • Faber Dirk J., van der Meer Freek J., van Leeuwen Ton G. Spectroscopic analysis of arterial wall components using OCTin: Evelyn Regar, Ton G. van Leeuwen, Patrick W. Serruys, editors. Optical Coherence Tomography in Cardiovascular Research. London: Informa Healthcare; 2007. p. 231-240, ISBN 9781841846118

2006

  • van den Wijngaard Jeroen P. H. M., Westerhof Berend E., Faber Dirk J., Ramsay Margaret M., Westerhof Nico, van Gemert Martin J. C. Abnormal arterial flows by a distributed model of the fetal circulation American journal of physiology. Regulatory, integrative and comparative physiology 2006;291 (5):R1222-R1233 [PubMed]
  • de Vries H. R., Aalders M. C. G., Faber D. J., van den Wijngaard J. P. H. M., Nikkels P. G. J., van Gemert M. J. C. Colour oscillations in arterioarterial anastomoses reflect natural differences in donor and recipient oxygenation and hematocrit Placenta 2006;27 (11-12):1055-1059 [PubMed]
  • Aalders Maurice C. G., Triesscheijn Martijn, Ruevekamp Marjan, de Bruin Martijn, Baas Paul, Faber Dirk J., Stewart Fiona A. Doppler optical coherence tomography to monitor the effect of photodynamic therapy on tissue morphology and perfusion Journal of biomedical optics 2006;11 (4):044011 [PubMed]
  • van Velthoven Mirjam E. J., van der Linden Martijn H., de Smet Marc D., Faber Dirk J., Verbraak Frank D. Influence of cataract on optical coherence tomography image quality and retinal thickness British journal of ophthalmology 2006;90 (10):1259-1262 [PubMed]
  • Faber D. J., van Velthoven M. E. J., de Bruin M., Aalders M. C. G., Verbraak F. D., Graf C., van Leeuwen T. G. NAOMI: nanoparticle assisted optical molecular imagingin: J. A. Izatt, J. G. Fujimoto, V. V. Tuchin, editors. Coherence domain optical coherence tomography in biomedicine X. Proc. SPIE 6079 607905-1. S.l.: s.n.; 2006.
  • van Leeuwen T. G., van der Meer F. J., Faber D. J., Cilesiz I. Temperature dependent optical properties of individual vascular wall components measured by OCTin: N. Kollias, H. Zeng, B. Choi, R. S. Malek, B. J. F. Wong, J. F. R. Ilgner, E. A. Trowers, W. T. W. de Riese, H. Hirschberg, S. J. Madsen, M. D. Lucroy, L. P. Tate, K. W. Gregory, G. J. Tearney, editors. Photonic therapeutics and diagnostics II. Proc. SPIE Vol. 6078 60782A-1. S.l.: s.n.; 2006.
  • van der Meer Freek J., Faber Dirk J., Cilesiz Inci, van Gemert Martin J. C., van Leeuwen Ton G. Temperature-dependent optical properties of individual vascular wall components measured by optical coherence tomography Journal of biomedical optics 2006;11 (4):041120 [PubMed]

2005

  • van der Meer Freek J., Faber Dirk J., Aalders Maurice C., Perrée Jop, van Leeuwen Ton G. Apoptosis induces temporal increase in attenuation as measured by optical coherence tomographyin: European Conference on Biomedical Optics, ECBO 2005. Optical Society of America (OSA); 2005., ISBN 0819458635
  • Heger Michal, Beek Johan, Stenback Karin, Faber Dirk, van Gemert Martin, Ince Can Darkfield orthogonal polarized spectral imaging for studying endovascular laser-tissue interactions in vivo - a preliminary study Optics express 2005;13 (3):702-715 [PubMed]
  • Faber D. J. Functional optical coherence tomography. Spatially resolved measurements of optical properties 2005. 102p. [UvA Dissertations Online] University of Amsterdam. (Supervisors: van Leeuwen A. G. J. M., van Gemert M. J. C.)
  • Faber Dirk J., van der Meer Freek J., Aalders Maurice C. G., de Bruin D. Martijn, van Leeuwen Ton G. Hematocrit-dependence of the scattering coefficient of blood determined by optical coherence tomographyin: European Conference on Biomedical Optics, ECBO 2005. Optical Society of America (OSA); 2005., ISBN 0819458635
  • van der Meer Freek J., Faber Dirk J., Baraznji Sassoon David M., Aalders Maurice C., Pasterkamp Gerard, van Leeuwen Ton G. Localized measurement of optical attenuation coefficients of atherosclerotic plaque constituents by quantitative optical coherence tomography IEEE transactions on medical imaging 2005;24 (10):1369-1376 [PubMed]
  • de Bruin D. M., Verbraak F. D., Sulak M., de Jong L. A. M. S., Aalders M. C. G., Faber D. J., van Leeuwen T. G. Optical coherence tomography of the Ex-press™ miniature glaucoma implantin: European Conference on Biomedical Optics, ECBO 2005. Optical Society of America (OSA); 2005., ISBN 0819458635
  • Verbraak F. D., de Bruin D. M., Sulak M., de Jong L. A. M. S., Aalders M., Faber D. J., van Leeuwen T. G. Optical coherence tomography of the Ex-PRESS miniature glaucoma implant Lasers in medical science 2005;20 (1):41-44 [PubMed]
  • van der Meer F. J., Faber D. J., Perrée J., Pasterkamp G., Baraznji Sassoon D., van Leeuwen T. G. Quantitative optical coherence tomography of arterial wall components Lasers in medical science 2005;20 (1):45-51 [PubMed]
  • Faber Dirk J., Mik Egbert G., Aalders Maurice C. G., van Leeuwen Ton G. Toward assessment of blood oxygen saturation by spectroscopic optical coherence tomography Optics letters 2005;30 (9):1015-1017 [PubMed]

2004

  • Faber Dirk J., van Leeuwen Ton G. J. M. Enhanced spatial discimination of plaque components by quantitative optical coherence tomography Circulation 2004
  • Faber Dirk J., Aalders Maurice C. G., Mik Egbert G., Hooper Brett A., van Gemert Martin J. C., van Leeuwen Ton G. Oxygen saturation-dependent absorption and scattering of blood Physical review letters 2004;93 (2):028102 [PubMed]
  • Faber Dirk, van der Meer Freek, Aalders Maurice, van Leeuwen Ton Quantitative measurement of attenuation coefficients of weakly scattering media using optical coherence tomography Optics express 2004;12 (19):4353-4365 [PubMed]

2003

  • Faber Dirk J., Mik Egbert G., Aalders Maurice C. G., van Leeuwen Ton G. Light absorption of (oxy-)hemoglobin assessed by spectroscopic optical coherence tomography Optics letters 2003;28 (16):1436-1438 [PubMed]
  • van Leeuwen T. G., Faber D. J., Aalders M. C. Measurement of the axial point spread function in scattering media using single-mode fiber-based optical coherence tomography IEEE JOURNAL OF SELECTED TOPICS IN QUANTUM ELECTRONICS 2003;9 (2):227-233
  • Faber Dirk J., Mik Egbert G., Aalders Maurice C.G., Van Leeuwen Ton G. Oxygen saturation dependent index of refraction of hemoglobin solutions assessed by OCTin: x. 2003. p. 271-281

2002

  • Çilesiz Inci, Fockens Paul, Kerindongo Raphaela, Faber Dirk, Tytgat Guido, Ten Kate Febo, Van Leeuwen Ton Comparative OCT imaging of human esophagus: How well can we localize the muscularis mucosae? Proceedings of SPIE 2002;4619:187-193
  • Cilesiz Inci, Fockens Paul, Kerindongo Raphaela, Faber Dirk, Tytgat Guido, ten Kate Fiebo, van Leeuwen Ton Comparative optical coherence tomography imaging of human esophagus: How accurate is localization of the muscularis mucosae? Gastrointestinal endoscopy 2002;56 (6):852-857 [PubMed]

2000

  • Steenbergen Wiendelt, Kolkman Roy, Faber Dirk, de Mul Frits Scattering properties of human whole blood under simple shear Proceedings of SPIE 2000;3923:99-108
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